Wall clock time and date at job start Tue Mar 31 2020 06:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 110.06370 * 2 1 4 4 O 1.20821 * 119.99912 * 23.78916 * 3 2 1 5 5 O 1.34228 * 119.99765 * 203.79381 * 3 2 1 6 6 C 1.53998 * 109.91721 * 121.20182 * 2 1 3 7 7 C 1.54594 * 105.14176 * 118.13095 * 6 2 1 8 8 C 1.54938 * 102.91961 * 338.04236 * 7 6 2 9 9 N 1.47900 * 109.91972 * 238.78991 * 2 1 3 10 10 C 1.46900 * 111.00035 * 26.49281 * 9 2 1 11 11 C 1.50700 * 109.47413 * 176.79258 * 10 9 2 12 12 C 1.38634 * 119.74958 * 95.43729 * 11 10 9 13 13 C 1.37610 * 120.24727 * 179.97438 * 12 11 10 14 14 C 1.40713 * 119.74653 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.24405 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00190 * 334.01335 * 15 14 13 17 17 C 1.39942 * 120.00075 * 154.01537 * 15 14 13 18 18 N 1.30824 * 120.00096 * 346.72399 * 17 15 14 19 19 Si 1.86810 * 120.00206 * 166.72211 * 17 15 14 20 20 H 1.48491 * 109.46944 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47006 * 300.00176 * 19 17 15 22 22 H 1.48496 * 109.46812 * 59.99998 * 19 17 15 23 23 C 1.40712 * 119.51238 * 0.28052 * 14 13 12 24 24 C 1.37621 * 119.74046 * 359.39775 * 23 14 13 25 25 H 1.09004 * 109.46594 * 174.83331 * 1 2 3 26 26 H 1.08997 * 109.47574 * 294.83009 * 1 2 3 27 27 H 1.09000 * 109.47482 * 54.83741 * 1 2 3 28 28 H 0.96701 * 117.00267 * 179.97438 * 5 3 2 29 29 H 1.08997 * 110.30631 * 359.21244 * 6 2 1 30 30 H 1.09008 * 110.30698 * 237.04666 * 6 2 1 31 31 H 1.08996 * 110.72689 * 219.68541 * 7 6 2 32 32 H 1.08996 * 110.72377 * 96.39513 * 7 6 2 33 33 H 1.09004 * 110.66892 * 278.97877 * 8 7 6 34 34 H 1.09000 * 110.81268 * 155.91577 * 8 7 6 35 35 H 1.09010 * 109.47060 * 56.78926 * 10 9 2 36 36 H 1.08999 * 109.47115 * 296.79541 * 10 9 2 37 37 H 1.08000 * 119.87439 * 359.97438 * 12 11 10 38 38 H 1.08011 * 120.12613 * 180.02562 * 13 12 11 39 39 H 0.96996 * 120.00160 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.13105 * 179.72525 * 23 14 13 41 41 H 1.08003 * 119.87588 * 180.31673 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4156 0.0000 4 8 1.3549 2.3115 0.4221 5 8 3.2763 1.6810 -0.4690 6 6 2.0546 -0.7501 1.2384 7 6 2.8537 -1.9482 0.6764 8 6 2.2661 -2.1193 -0.7470 9 7 2.0339 -0.7205 -1.1893 10 6 1.0593 -0.6705 -2.2873 11 6 1.6383 -1.3451 -3.5041 12 6 1.3466 -2.6766 -3.7566 13 6 1.8694 -3.3026 -4.8650 14 6 2.7031 -2.5860 -5.7433 15 6 3.2455 -3.2187 -6.8856 16 1 3.3917 -4.2888 -6.8921 17 6 3.5930 -2.4583 -8.0079 18 7 3.1854 -1.2194 -8.1103 19 14 4.6389 -3.2123 -9.3597 20 1 4.8643 -2.2076 -10.4296 21 1 5.9453 -3.6374 -8.7959 22 1 3.9379 -4.3914 -9.9283 23 6 2.9976 -1.2368 -5.4735 24 6 2.4583 -0.6293 -4.3626 25 1 -0.3633 -1.0236 -0.0926 26 1 -0.3634 0.4315 0.9326 27 1 -0.3634 0.5918 -0.8401 28 1 3.5641 2.6040 -0.4490 29 1 1.2225 -1.1027 1.8477 30 1 2.7063 -0.1024 1.8250 31 1 2.6805 -2.8423 1.2752 32 1 3.9172 -1.7144 0.6291 33 1 1.3276 -2.6725 -0.7119 34 1 2.9801 -2.6168 -1.4035 35 1 0.8300 0.3690 -2.5225 36 1 0.1465 -1.1847 -1.9865 37 1 0.7068 -3.2247 -3.0809 38 1 1.6405 -4.3400 -5.0601 39 1 3.4259 -0.6925 -8.8884 40 1 3.6399 -0.6786 -6.1385 41 1 2.6787 0.4077 -4.1562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399126667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:37 Heat of formation + Delta-G solvation = -68.660944 kcal Electronic energy + Delta-G solvation = -23206.142206 eV Core-core repulsion = 19857.320362 eV Total energy + Delta-G solvation = -3348.821844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78421 -38.78965 -37.33100 -35.98978 -33.99846 -32.34560 -31.38203 -29.60357 -29.15352 -26.43058 -26.23847 -24.02804 -22.95125 -21.30537 -20.83629 -19.88057 -19.24718 -17.85948 -17.27473 -16.85539 -15.87565 -15.33118 -15.13273 -14.68179 -14.43988 -14.01494 -13.96365 -13.42198 -13.06432 -12.88095 -12.70185 -12.42700 -12.35951 -11.96292 -11.88991 -11.50687 -11.45787 -11.33289 -11.19749 -11.09838 -11.01244 -10.92295 -10.71084 -10.49157 -10.31876 -10.28913 -9.59083 -9.33476 -9.16032 -8.21229 -7.42173 -7.26505 -6.70926 -4.35122 2.24405 2.75626 3.07041 3.09452 3.09930 3.13917 3.18519 3.94254 4.08741 4.45276 4.63618 4.70968 4.79966 5.12916 5.32033 5.33763 5.46262 5.58557 5.65095 5.66822 5.69756 5.81314 5.84992 5.92612 6.02010 6.15886 6.22723 6.28222 6.35073 6.46403 6.57836 6.96478 7.02063 7.10228 7.21958 7.32019 7.41527 7.63835 7.87340 8.06110 8.07709 8.16262 8.32282 8.67166 8.91660 8.99547 10.22437 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.003810 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.982784 B = 7347.588299 C = 7710.118279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.094 3.906 3 C 0.503 3.497 4 O -0.529 6.529 5 O -0.490 6.490 6 C -0.113 4.113 7 C -0.123 4.123 8 C 0.045 3.955 9 N -0.487 5.487 10 C 0.108 3.892 11 C -0.207 4.207 12 C -0.084 4.084 13 C -0.226 4.226 14 C 0.112 3.888 15 C -0.463 4.463 16 H 0.075 0.925 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.264 1.264 22 H -0.266 1.266 23 C -0.164 4.164 24 C -0.077 4.077 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.400 0.600 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.280 0.720 40 H 0.120 0.880 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 1.437 13.821 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.003 3.997 3 C 0.346 3.654 4 O -0.418 6.418 5 O -0.298 6.298 6 C -0.151 4.151 7 C -0.161 4.161 8 C -0.082 4.082 9 N -0.212 5.212 10 C -0.018 4.018 11 C -0.209 4.209 12 C -0.103 4.103 13 C -0.246 4.246 14 C 0.110 3.890 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.424 5.424 19 Si 0.734 3.266 20 H -0.204 1.204 21 H -0.189 1.189 22 H -0.191 1.191 23 C -0.183 4.183 24 C -0.096 4.096 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.257 0.743 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.907 1.724 13.547 13.687 hybrid contribution -0.190 0.104 -0.500 0.545 sum -1.097 1.828 13.048 13.221 Atomic orbital electron populations 1.22276 0.92787 1.02837 1.03716 1.21600 0.94473 0.89061 0.94614 1.23296 0.78834 0.91284 0.72030 1.90683 1.58336 1.47800 1.45022 1.84711 1.33289 1.35451 1.76354 1.22437 1.00351 0.97268 0.95076 1.22528 1.00558 0.96971 0.96021 1.23169 1.00197 0.89702 0.95155 1.65006 1.42049 1.11060 1.03105 1.21013 0.91746 0.99499 0.89568 1.18782 1.09112 0.94759 0.98203 1.20325 0.99411 0.93728 0.96870 1.20940 1.04950 0.99270 0.99394 1.17627 0.88269 0.91985 0.91140 1.19569 1.36771 0.95213 0.97726 0.90647 1.25894 0.94278 0.94574 0.99492 1.69795 1.35404 1.08725 1.28459 0.86354 0.80942 0.79592 0.79723 1.20366 1.18872 1.19092 1.21379 1.03306 0.96444 0.97207 1.20490 0.96983 0.97428 0.94687 0.90927 0.91178 0.91254 0.74287 0.90177 0.90987 0.90779 0.90329 0.93754 0.88781 0.91885 0.94660 0.89975 0.89196 0.90910 0.86259 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 6.43 37.16 0.24 -1.70 16 2 C 0.09 1.26 0.84 -131.68 -0.11 1.15 16 3 C 0.50 7.29 6.98 36.01 0.25 7.54 16 4 O -0.53 -8.59 16.99 -18.75 -0.32 -8.91 16 5 O -0.49 -6.48 13.15 -39.25 -0.52 -7.00 16 6 C -0.11 -1.22 6.20 -25.37 -0.16 -1.38 16 7 C -0.12 -1.35 7.06 -24.87 -0.18 -1.52 16 8 C 0.05 0.63 5.49 -1.90 -0.01 0.62 16 9 N -0.49 -7.59 4.68 -217.73 -1.02 -8.60 16 10 C 0.11 1.86 3.78 -4.98 -0.02 1.85 16 11 C -0.21 -4.36 4.90 -104.33 -0.51 -4.87 16 12 C -0.08 -1.81 9.00 -39.66 -0.36 -2.17 16 13 C -0.23 -5.43 9.80 -38.88 -0.38 -5.81 16 14 C 0.11 2.97 5.57 -106.83 -0.60 2.37 16 15 C -0.46 -12.24 9.07 -37.74 -0.34 -12.58 16 16 H 0.08 1.91 7.88 -52.48 -0.41 1.50 16 17 C 0.07 1.87 5.22 -17.34 -0.09 1.78 16 18 N -0.80 -20.68 10.81 55.55 0.60 -20.08 16 19 Si 0.91 18.69 29.58 -169.99 -5.03 13.66 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.16 -4.25 8.68 -38.87 -0.34 -4.59 16 24 C -0.08 -1.79 9.69 -39.66 -0.38 -2.18 16 25 H 0.07 0.81 7.38 -51.93 -0.38 0.43 16 26 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.07 0.92 6.89 -51.93 -0.36 0.56 16 28 H 0.40 3.43 9.10 45.56 0.41 3.84 16 29 H 0.08 0.73 7.68 -51.93 -0.40 0.33 16 30 H 0.07 0.75 7.68 -51.92 -0.40 0.35 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.59 7.92 -51.93 -0.41 0.18 16 34 H 0.09 1.51 7.97 -51.93 -0.41 1.09 16 35 H 0.06 1.11 7.59 -51.92 -0.39 0.72 16 36 H 0.04 0.56 6.24 -51.93 -0.32 0.24 16 37 H 0.08 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.09 2.05 8.06 -52.48 -0.42 1.62 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.12 3.23 6.12 -52.49 -0.32 2.90 16 41 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -29.50 334.51 -9.29 -38.78 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.07 Total: 8.59 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -2.98 Total: -21.48 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: -0.42 Total: -28.68 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.83 Total: -15.90 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.50 -9.29 -38.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399126667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.876 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds