Wall clock time and date at job start Tue Mar 31 2020 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 110.06370 * 2 1 4 4 O 1.20821 * 119.99912 * 23.78916 * 3 2 1 5 5 O 1.34228 * 119.99765 * 203.79381 * 3 2 1 6 6 C 1.53998 * 109.91721 * 121.20182 * 2 1 3 7 7 C 1.54594 * 105.14176 * 118.13095 * 6 2 1 8 8 C 1.54938 * 102.91961 * 338.04236 * 7 6 2 9 9 N 1.47900 * 109.91972 * 238.78991 * 2 1 3 10 10 C 1.46900 * 111.00035 * 26.49281 * 9 2 1 11 11 C 1.50700 * 109.47413 * 176.79258 * 10 9 2 12 12 C 1.38634 * 119.74958 * 95.43729 * 11 10 9 13 13 C 1.37610 * 120.24727 * 179.97438 * 12 11 10 14 14 C 1.40713 * 119.74653 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.24405 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00190 * 334.01335 * 15 14 13 17 17 C 1.39942 * 120.00075 * 154.01537 * 15 14 13 18 18 N 1.30824 * 120.00096 * 346.72399 * 17 15 14 19 19 Si 1.86810 * 120.00206 * 166.72211 * 17 15 14 20 20 H 1.48491 * 109.46944 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47006 * 300.00176 * 19 17 15 22 22 H 1.48496 * 109.46812 * 59.99998 * 19 17 15 23 23 C 1.40712 * 119.51238 * 0.28052 * 14 13 12 24 24 C 1.37621 * 119.74046 * 359.39775 * 23 14 13 25 25 H 1.09004 * 109.46594 * 174.83331 * 1 2 3 26 26 H 1.08997 * 109.47574 * 294.83009 * 1 2 3 27 27 H 1.09000 * 109.47482 * 54.83741 * 1 2 3 28 28 H 0.96701 * 117.00267 * 179.97438 * 5 3 2 29 29 H 1.08997 * 110.30631 * 359.21244 * 6 2 1 30 30 H 1.09008 * 110.30698 * 237.04666 * 6 2 1 31 31 H 1.08996 * 110.72689 * 219.68541 * 7 6 2 32 32 H 1.08996 * 110.72377 * 96.39513 * 7 6 2 33 33 H 1.09004 * 110.66892 * 278.97877 * 8 7 6 34 34 H 1.09000 * 110.81268 * 155.91577 * 8 7 6 35 35 H 1.09010 * 109.47060 * 56.78926 * 10 9 2 36 36 H 1.08999 * 109.47115 * 296.79541 * 10 9 2 37 37 H 1.08000 * 119.87439 * 359.97438 * 12 11 10 38 38 H 1.08011 * 120.12613 * 180.02562 * 13 12 11 39 39 H 0.96996 * 120.00160 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.13105 * 179.72525 * 23 14 13 41 41 H 1.08003 * 119.87588 * 180.31673 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4156 0.0000 4 8 1.3549 2.3115 0.4221 5 8 3.2763 1.6810 -0.4690 6 6 2.0546 -0.7501 1.2384 7 6 2.8537 -1.9482 0.6764 8 6 2.2661 -2.1193 -0.7470 9 7 2.0339 -0.7205 -1.1893 10 6 1.0593 -0.6705 -2.2873 11 6 1.6383 -1.3451 -3.5041 12 6 1.3466 -2.6766 -3.7566 13 6 1.8694 -3.3026 -4.8650 14 6 2.7031 -2.5860 -5.7433 15 6 3.2455 -3.2187 -6.8856 16 1 3.3917 -4.2888 -6.8921 17 6 3.5930 -2.4583 -8.0079 18 7 3.1854 -1.2194 -8.1103 19 14 4.6389 -3.2123 -9.3597 20 1 4.8643 -2.2076 -10.4296 21 1 5.9453 -3.6374 -8.7959 22 1 3.9379 -4.3914 -9.9283 23 6 2.9976 -1.2368 -5.4735 24 6 2.4583 -0.6293 -4.3626 25 1 -0.3633 -1.0236 -0.0926 26 1 -0.3634 0.4315 0.9326 27 1 -0.3634 0.5918 -0.8401 28 1 3.5641 2.6040 -0.4490 29 1 1.2225 -1.1027 1.8477 30 1 2.7063 -0.1024 1.8250 31 1 2.6805 -2.8423 1.2752 32 1 3.9172 -1.7144 0.6291 33 1 1.3276 -2.6725 -0.7119 34 1 2.9801 -2.6168 -1.4035 35 1 0.8300 0.3690 -2.5225 36 1 0.1465 -1.1847 -1.9865 37 1 0.7068 -3.2247 -3.0809 38 1 1.6405 -4.3400 -5.0601 39 1 3.4259 -0.6925 -8.8884 40 1 3.6399 -0.6786 -6.1385 41 1 2.6787 0.4077 -4.1562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399126667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:36 Heat of formation + Delta-G solvation = -86.511348 kcal Electronic energy + Delta-G solvation = -23206.916257 eV Core-core repulsion = 19857.320362 eV Total energy + Delta-G solvation = -3349.595896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87952 -40.05186 -38.99737 -37.09207 -35.76127 -33.73608 -32.43545 -31.31743 -30.91109 -28.00609 -27.26562 -25.47463 -24.18066 -22.88379 -22.34482 -21.34165 -20.42505 -19.18686 -18.96949 -17.94702 -17.20039 -16.91469 -16.27102 -16.03598 -15.75006 -15.66687 -15.29927 -14.84305 -14.42455 -14.19676 -13.95342 -13.75084 -13.64940 -13.55448 -13.25868 -12.97243 -12.79901 -12.65718 -12.51834 -12.49698 -12.32152 -12.09565 -11.99812 -11.96636 -11.66380 -11.41835 -11.34447 -11.18380 -11.01178 -9.42021 -9.30371 -9.10398 -8.57435 -6.31847 0.96487 1.15677 1.19892 1.38529 1.49873 1.53594 2.17163 2.22250 2.69427 3.04677 3.50441 3.69171 3.81288 3.83935 4.21928 4.26882 4.29958 4.40555 4.44865 4.54207 4.57511 4.62149 4.68237 4.77659 4.86052 4.91423 5.07217 5.08437 5.11272 5.16871 5.18819 5.29017 5.42628 5.49997 5.57014 5.74750 5.86551 6.01133 6.07176 6.14979 6.32820 6.42839 6.75429 6.98178 7.06299 7.08177 8.38094 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.003810 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.982784 B = 7347.588299 C = 7710.118279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 C 0.501 3.499 4 O -0.552 6.552 5 O -0.498 6.498 6 C -0.108 4.108 7 C -0.113 4.113 8 C 0.041 3.959 9 N -0.505 5.505 10 C 0.116 3.884 11 C -0.191 4.191 12 C -0.079 4.079 13 C -0.239 4.239 14 C 0.079 3.921 15 C -0.502 4.502 16 H 0.074 0.926 17 C 0.033 3.967 18 N -0.833 5.833 19 Si 0.982 3.018 20 H -0.269 1.269 21 H -0.261 1.261 22 H -0.259 1.259 23 C -0.188 4.188 24 C -0.086 4.086 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.418 0.582 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.285 0.715 40 H 0.098 0.902 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 0.650 15.734 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.000 4.000 3 C 0.345 3.655 4 O -0.442 6.442 5 O -0.309 6.309 6 C -0.146 4.146 7 C -0.151 4.151 8 C -0.086 4.086 9 N -0.230 5.230 10 C -0.011 4.011 11 C -0.192 4.192 12 C -0.097 4.097 13 C -0.258 4.258 14 C 0.077 3.923 15 C -0.532 4.532 16 H 0.092 0.908 17 C -0.181 4.181 18 N -0.460 5.460 19 Si 0.803 3.197 20 H -0.194 1.194 21 H -0.185 1.185 22 H -0.184 1.184 23 C -0.208 4.208 24 C -0.105 4.105 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.278 0.722 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.503 0.944 15.476 15.578 hybrid contribution -0.041 0.429 -0.942 1.035 sum -1.544 1.373 14.535 14.681 Atomic orbital electron populations 1.22276 0.91774 1.03608 1.03733 1.21761 0.95293 0.88326 0.94630 1.23599 0.78799 0.91673 0.71460 1.90673 1.58889 1.48531 1.46156 1.84677 1.32946 1.37273 1.75960 1.22488 1.01254 0.96779 0.94079 1.22494 0.99941 0.98291 0.94396 1.23196 1.00368 0.88623 0.96421 1.64804 1.41848 1.12468 1.03867 1.20876 0.92612 0.98840 0.88730 1.19190 1.06740 0.94623 0.98665 1.20636 0.98894 0.93908 0.96308 1.21169 1.04893 0.99749 1.00010 1.17957 0.89573 0.92582 0.92224 1.19829 1.39009 0.95482 0.98889 0.90754 1.26742 0.94916 0.94885 1.01565 1.69871 1.36539 1.10059 1.29491 0.85254 0.78935 0.78886 0.76627 1.19364 1.18520 1.18352 1.21303 1.04498 0.96749 0.98233 1.20663 0.97390 0.97945 0.94499 0.89387 0.90088 0.92704 0.72230 0.87629 0.90518 0.87970 0.91089 0.92415 0.91412 0.92515 0.92545 0.86422 0.88493 0.90408 0.88442 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 6.43 71.98 0.46 -2.87 16 2 C 0.09 2.19 0.84 2.93 0.00 2.20 16 3 C 0.50 13.67 6.98 71.24 0.50 14.17 16 4 O -0.55 -17.10 16.99 21.98 0.37 -16.73 16 5 O -0.50 -12.56 13.15 -51.40 -0.68 -13.24 16 6 C -0.11 -1.94 6.20 31.47 0.20 -1.74 16 7 C -0.11 -2.11 7.06 31.80 0.22 -1.88 16 8 C 0.04 1.04 5.49 86.65 0.48 1.51 16 9 N -0.50 -14.64 4.68 -842.78 -3.94 -18.58 16 10 C 0.12 3.77 3.78 85.56 0.32 4.10 16 11 C -0.19 -7.86 4.90 -19.68 -0.10 -7.95 16 12 C -0.08 -3.27 9.00 22.22 0.20 -3.07 16 13 C -0.24 -11.55 9.80 22.73 0.22 -11.32 16 14 C 0.08 4.31 5.57 -21.29 -0.12 4.20 16 15 C -0.50 -27.56 9.07 23.46 0.21 -27.35 16 16 H 0.07 3.91 7.88 -2.91 -0.02 3.89 16 17 C 0.03 1.68 5.22 85.26 0.45 2.12 16 18 N -0.83 -44.83 10.81 21.83 0.24 -44.59 16 19 Si 0.98 39.02 29.58 68.60 2.03 41.05 16 20 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 C -0.19 -10.18 8.68 22.73 0.20 -9.98 16 24 C -0.09 -4.09 9.69 22.22 0.22 -3.87 16 25 H 0.09 1.60 7.38 -2.38 -0.02 1.58 16 26 H 0.08 1.56 8.07 -2.39 -0.02 1.55 16 27 H 0.05 1.33 6.89 -2.39 -0.02 1.31 16 28 H 0.42 6.72 9.10 -74.06 -0.67 6.05 16 29 H 0.11 1.40 7.68 -2.39 -0.02 1.38 16 30 H 0.08 1.34 7.68 -2.38 -0.02 1.32 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.31 7.92 -2.38 -0.02 1.29 16 34 H 0.07 2.08 7.97 -2.39 -0.02 2.06 16 35 H 0.06 1.92 7.59 -2.38 -0.02 1.90 16 36 H 0.06 1.60 6.24 -2.39 -0.01 1.59 16 37 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 40 H 0.10 5.60 6.12 -2.91 -0.02 5.58 16 41 H 0.09 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -65.74 334.51 1.85 -63.89 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.37 Total: 29.96 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 3.46 Total: -41.75 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -3.70 Total: -63.17 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.30 Total: -29.96 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -65.74 1.85 -63.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399126667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.623 kcal (2) G-P(sol) polarization free energy of solvation -65.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds