Wall clock time and date at job start Tue Mar 31 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35911 * 116.99916 * 2 1 4 4 C 1.38506 * 119.98623 * 0.27622 * 3 2 1 5 5 C 1.39484 * 119.79455 * 180.27616 * 4 3 2 6 6 C 1.47854 * 120.11917 * 179.72146 * 5 4 3 7 7 O 1.21553 * 119.99868 * 4.88004 * 6 5 4 8 8 N 1.34772 * 119.99859 * 184.88074 * 6 5 4 9 9 C 1.46504 * 119.99846 * 185.07867 * 8 6 5 10 10 C 1.53002 * 109.47297 * 184.99506 * 9 8 6 11 11 C 1.50697 * 115.54799 * 54.23287 * 10 9 8 12 12 H 1.07995 * 120.00091 * 215.59128 * 11 10 9 13 13 C 1.37879 * 120.00031 * 35.32346 * 11 10 9 14 14 N 1.31513 * 119.99921 * 355.77854 * 13 11 10 15 15 Si 1.86800 * 120.00037 * 175.77738 * 13 11 10 16 16 H 1.48502 * 109.47036 * 60.00180 * 15 13 11 17 17 H 1.48495 * 109.47255 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47174 * 300.00295 * 15 13 11 19 19 C 1.52995 * 117.49914 * 199.90964 * 10 9 8 20 20 C 1.52996 * 117.49596 * 268.56790 * 10 9 8 21 21 C 1.39602 * 119.76042 * 359.45387 * 5 4 3 22 22 C 1.37963 * 119.97159 * 0.27057 * 21 5 4 23 23 C 1.38297 * 120.20398 * 0.02562 * 22 21 5 24 24 C 1.50700 * 119.88092 * 180.02562 * 23 22 21 25 25 H 1.08999 * 109.47259 * 59.99749 * 1 2 3 26 26 H 1.08996 * 109.46825 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46771 * 300.00167 * 1 2 3 28 28 H 1.08004 * 120.10138 * 359.97438 * 4 3 2 29 29 H 0.96998 * 120.00182 * 5.07179 * 8 6 5 30 30 H 1.09002 * 109.47153 * 64.99420 * 9 8 6 31 31 H 1.09003 * 109.47096 * 304.99280 * 9 8 6 32 32 H 0.97001 * 119.99910 * 184.99431 * 14 13 11 33 33 H 1.09004 * 117.49588 * 215.00012 * 19 10 9 34 34 H 1.09003 * 117.49856 * 0.02562 * 19 10 9 35 35 H 1.08997 * 117.50376 * 359.97438 * 20 10 9 36 36 H 1.09009 * 117.49851 * 144.97083 * 20 10 9 37 37 H 1.08001 * 120.01799 * 180.29881 * 21 5 4 38 38 H 1.07993 * 119.90236 * 180.02562 * 22 21 5 39 39 H 1.09008 * 109.46576 * 90.00739 * 24 23 22 40 40 H 1.08995 * 109.47498 * 210.00314 * 24 23 22 41 41 H 1.08998 * 109.47290 * 330.01244 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3724 0.0058 5 6 1.9288 3.6131 -0.0001 6 6 1.1302 4.8574 -0.0002 7 8 -0.0804 4.8026 0.0944 8 7 1.7446 6.0524 -0.1051 9 6 0.9662 7.2885 0.0064 10 6 1.8731 8.4891 -0.2712 11 6 2.6236 8.4484 -1.5774 12 1 3.6244 8.8497 -1.6378 13 6 2.0347 7.8938 -2.6939 14 7 0.8521 7.3261 -2.6001 15 14 2.9165 7.9488 -4.3397 16 1 4.2158 7.2382 -4.2292 17 1 2.0778 7.2898 -5.3729 18 1 3.1567 9.3625 -4.7256 19 6 1.4096 9.8565 0.2350 20 6 2.5718 9.1381 0.9251 21 6 3.3234 3.6757 -0.0002 22 6 4.0655 2.5127 -0.0001 23 6 3.4322 1.2833 -0.0005 24 6 4.2500 0.0175 0.0001 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2128 2.3175 0.0099 29 1 2.7021 6.0940 -0.2544 30 1 0.5545 7.3691 1.0125 31 1 0.1526 7.2723 -0.7189 32 1 0.4696 6.8725 -3.3675 33 1 1.6476 10.7267 -0.3768 34 1 0.4588 9.9007 0.7662 35 1 2.3852 8.7101 1.9100 36 1 3.5746 9.5354 0.7676 37 1 3.8212 4.6342 0.0002 38 1 5.1443 2.5625 0.0002 39 1 4.4463 -0.2877 1.0280 40 1 3.7001 -0.7707 -0.5141 41 1 5.1952 0.1953 -0.5129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404161699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:16 Heat of formation + Delta-G solvation = -43.610697 kcal Electronic energy + Delta-G solvation = -22938.404976 eV Core-core repulsion = 19590.669392 eV Total energy + Delta-G solvation = -3347.735584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.49092 -40.27643 -38.56636 -38.05415 -34.89128 -34.15866 -33.74361 -31.18426 -28.91387 -28.47124 -27.62584 -26.60067 -23.45453 -23.09829 -22.91970 -21.23472 -21.12551 -19.45718 -18.22965 -17.41968 -17.16903 -16.80536 -16.73024 -16.50132 -16.14371 -15.88423 -15.46126 -14.86569 -14.81901 -14.55224 -14.36710 -14.18076 -13.63891 -13.40648 -13.13042 -13.00509 -12.91804 -12.86969 -12.60668 -12.32599 -12.31004 -12.12284 -12.05891 -12.01572 -11.55175 -10.97484 -10.80334 -10.64798 -10.16104 -9.92554 -9.64812 -9.17041 -7.93898 -6.20485 -0.15830 0.37386 1.42376 1.45468 1.51565 1.96524 2.28170 2.40435 2.48014 2.87493 3.07268 3.62432 3.73881 3.82087 4.03474 4.14026 4.20048 4.27679 4.32186 4.39709 4.53533 4.56154 4.69637 4.73585 4.75880 4.77415 4.81741 4.90120 4.96636 5.10557 5.20923 5.27951 5.32405 5.37140 5.44868 5.53047 5.60039 5.71758 5.86520 5.98177 6.31204 6.36461 6.76887 6.94019 7.44941 7.47638 8.91288 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.004610 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.181636 B = 6072.069727 C = 6455.897454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.318 6.318 3 C 0.107 3.893 4 C -0.165 4.165 5 C -0.113 4.113 6 C 0.540 3.460 7 O -0.601 6.601 8 N -0.667 5.667 9 C 0.173 3.827 10 C 0.006 3.994 11 C -0.503 4.503 12 H 0.062 0.938 13 C 0.034 3.966 14 N -0.891 5.891 15 Si 0.947 3.053 16 H -0.265 1.265 17 H -0.296 1.296 18 H -0.274 1.274 19 C -0.200 4.200 20 C -0.184 4.184 21 C -0.120 4.120 22 C -0.084 4.084 23 C -0.099 4.099 24 C -0.102 4.102 25 H 0.050 0.950 26 H 0.131 0.869 27 H 0.055 0.945 28 H 0.127 0.873 29 H 0.404 0.596 30 H 0.018 0.982 31 H 0.081 0.919 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.172 0.828 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 -13.735 5.438 16.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.232 6.232 3 C 0.062 3.938 4 C -0.184 4.184 5 C -0.117 4.117 6 C 0.328 3.672 7 O -0.485 6.485 8 N -0.313 5.313 9 C 0.049 3.951 10 C 0.005 3.995 11 C -0.540 4.540 12 H 0.080 0.920 13 C -0.168 4.168 14 N -0.528 5.528 15 Si 0.773 3.227 16 H -0.189 1.189 17 H -0.222 1.222 18 H -0.199 1.199 19 C -0.238 4.238 20 C -0.221 4.221 21 C -0.139 4.139 22 C -0.101 4.101 23 C -0.100 4.100 24 C -0.158 4.158 25 H 0.069 0.931 26 H 0.149 0.851 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.240 0.760 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.157 0.843 38 H 0.189 0.811 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.123 -13.954 5.384 16.162 hybrid contribution -0.225 0.735 -1.080 1.326 sum 5.898 -13.219 4.303 15.102 Atomic orbital electron populations 1.23298 0.77049 1.05657 1.01522 1.86018 1.22679 1.25650 1.88811 1.18835 0.92484 0.83878 0.98587 1.21289 1.00602 0.91390 1.05156 1.19807 0.94693 0.92352 1.04804 1.18663 0.87117 0.84573 0.76837 1.90635 1.15833 1.88039 1.53985 1.45446 1.12040 1.04801 1.69039 1.20800 0.95376 0.82248 0.96630 1.19268 0.97506 0.89722 0.93007 1.20671 1.00533 1.40224 0.92593 0.92027 1.25614 0.95076 0.94578 1.01494 1.70055 1.17006 1.35060 1.30670 0.85778 0.78720 0.78256 0.79904 1.18935 1.22226 1.19934 1.22963 0.97538 0.98322 1.05026 1.22956 0.96399 1.06050 0.96658 1.21478 0.91678 1.00542 1.00197 1.21203 1.01583 0.89539 0.97821 1.19873 0.90194 0.97885 1.02061 1.20703 0.99093 0.92609 1.03424 0.93133 0.85059 0.92681 0.85505 0.75989 0.96391 0.90167 0.93570 0.90371 0.90679 0.89680 0.89467 0.84295 0.81107 0.89903 0.91377 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.50 16 2 O -0.32 -7.95 9.52 -92.54 -0.88 -8.84 16 3 C 0.11 3.06 6.65 22.47 0.15 3.21 16 4 C -0.16 -5.63 8.58 22.63 0.19 -5.44 16 5 C -0.11 -4.20 5.87 -20.10 -0.12 -4.32 16 6 C 0.54 24.57 7.76 86.79 0.67 25.24 16 7 O -0.60 -31.65 16.34 -3.88 -0.06 -31.71 16 8 N -0.67 -29.80 4.96 -465.95 -2.31 -32.11 16 9 C 0.17 8.46 4.62 86.38 0.40 8.86 16 10 C 0.01 0.26 2.04 -52.93 -0.11 0.15 16 11 C -0.50 -25.15 8.43 25.60 0.22 -24.93 16 12 H 0.06 3.01 7.82 -2.91 -0.02 2.99 16 13 C 0.03 1.75 5.31 84.66 0.45 2.20 16 14 N -0.89 -49.34 10.11 21.45 0.22 -49.13 16 15 Si 0.95 41.50 29.54 68.60 2.03 43.53 16 16 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 C -0.20 -8.50 9.96 30.62 0.30 -8.19 16 20 C -0.18 -7.17 9.92 30.62 0.30 -6.86 16 21 C -0.12 -3.56 9.51 22.53 0.21 -3.35 16 22 C -0.08 -1.94 9.68 22.22 0.21 -1.73 16 23 C -0.10 -2.37 5.90 -19.71 -0.12 -2.49 16 24 C -0.10 -1.69 9.78 71.24 0.70 -1.00 16 25 H 0.05 1.08 7.67 -2.39 -0.02 1.06 16 26 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.12 7.65 -2.38 -0.02 1.10 16 28 H 0.13 4.52 5.89 -2.91 -0.02 4.50 16 29 H 0.40 16.62 6.21 -92.71 -0.58 16.04 16 30 H 0.02 0.86 8.09 -2.39 -0.02 0.84 16 31 H 0.08 4.59 5.89 -2.39 -0.01 4.58 16 32 H 0.25 14.09 8.32 -92.71 -0.77 13.32 16 33 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 34 H 0.07 3.03 8.14 -2.39 -0.02 3.02 16 35 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 37 H 0.14 3.82 6.47 -2.91 -0.02 3.80 16 38 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.07 1.19 7.52 -2.39 -0.02 1.17 16 41 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 Total: -1.00 -65.04 342.14 4.04 -61.00 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.47 Total: 34.40 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 4.59 Total: -17.14 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.10 Total: -81.24 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.94 Total: -40.55 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -65.04 4.04 -61.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404161699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.394 kcal (2) G-P(sol) polarization free energy of solvation -65.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds