Wall clock time and date at job start Tue Mar 31 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99751 * 2 1 4 4 C 1.53783 * 113.61762 * 60.00262 * 3 2 1 5 5 C 1.53785 * 87.07804 * 219.93175 * 4 3 2 6 6 C 1.53006 * 113.61096 * 139.97884 * 5 4 3 7 7 C 1.53002 * 113.61471 * 270.79457 * 5 4 3 8 8 C 1.53781 * 87.17620 * 25.38900 * 5 4 3 9 9 S 1.65603 * 119.99879 * 179.97438 * 2 1 3 10 10 O 1.42098 * 104.27400 * 26.07393 * 9 2 1 11 11 O 1.42092 * 104.27298 * 153.92863 * 9 2 1 12 12 C 1.81397 * 104.45047 * 270.00229 * 9 2 1 13 13 C 1.52997 * 109.46909 * 179.97438 * 12 9 2 14 14 C 1.52999 * 109.47322 * 179.97438 * 13 12 9 15 15 C 1.50698 * 109.47422 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00101 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99732 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00179 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47499 * 89.99432 * 19 17 15 21 21 H 1.48504 * 109.47013 * 210.00058 * 19 17 15 22 22 H 1.48506 * 109.46772 * 329.99440 * 19 17 15 23 23 H 1.09001 * 109.47048 * 89.99948 * 1 2 3 24 24 H 1.08999 * 109.47222 * 209.99953 * 1 2 3 25 25 H 1.08998 * 109.47088 * 330.00042 * 1 2 3 26 26 H 1.09004 * 112.84918 * 191.19713 * 3 2 1 27 27 H 1.08997 * 113.61737 * 105.38241 * 4 3 2 28 28 H 1.09000 * 113.61138 * 334.47382 * 4 3 2 29 29 H 1.09001 * 109.47002 * 181.52532 * 6 5 4 30 30 H 1.08993 * 109.46955 * 301.52970 * 6 5 4 31 31 H 1.09000 * 109.47050 * 61.52798 * 6 5 4 32 32 H 1.08999 * 109.47105 * 298.47603 * 7 5 4 33 33 H 1.09000 * 109.46611 * 58.47476 * 7 5 4 34 34 H 1.08998 * 109.47047 * 178.47668 * 7 5 4 35 35 H 1.08998 * 113.61545 * 89.15547 * 8 5 4 36 36 H 1.08993 * 113.61303 * 220.06004 * 8 5 4 37 37 H 1.09000 * 109.47052 * 299.99939 * 12 9 2 38 38 H 1.08998 * 109.47285 * 60.00322 * 12 9 2 39 39 H 1.09002 * 109.47815 * 300.00116 * 13 12 9 40 40 H 1.09004 * 109.47157 * 60.00104 * 13 12 9 41 41 H 1.09000 * 109.47669 * 300.01104 * 14 13 12 42 42 H 1.09004 * 109.46524 * 60.00201 * 14 13 12 43 43 H 0.97008 * 119.99714 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 1.8954 2.1545 1.2203 5 6 1.9151 3.3528 0.2566 6 6 0.8286 4.3903 0.5464 7 6 3.3013 3.9768 0.0829 8 6 1.5405 2.3638 -0.8599 9 16 2.2930 -1.4342 0.0006 10 8 1.3969 -2.3563 -0.6042 11 8 3.5394 -1.1194 -0.6047 12 6 2.5193 -1.8255 1.7574 13 6 3.2807 -3.1456 1.8918 14 6 3.4722 -3.4754 3.3735 15 6 4.2227 -4.7755 3.5060 16 1 4.5326 -5.3125 2.6218 17 6 4.5138 -5.2792 4.7560 18 7 4.1369 -4.6249 5.8327 19 14 5.4448 -6.8903 4.9202 20 1 6.9037 -6.6168 4.9636 21 1 5.0320 -7.5752 6.1715 22 1 5.1386 -7.7598 3.7559 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 3.2624 1.1426 -0.1951 27 1 2.6991 2.1727 1.9563 28 1 0.9176 1.9674 1.6642 29 1 0.8868 5.1925 -0.1892 30 1 -0.1511 3.9158 0.4899 31 1 0.9761 4.8016 1.5450 32 1 3.6529 4.3539 1.0432 33 1 3.9955 3.2224 -0.2874 34 1 3.2429 4.7985 -0.6308 35 1 0.4656 2.2340 -0.9856 36 1 2.0581 2.5508 -1.8006 37 1 3.0866 -1.0279 2.2371 38 1 1.5451 -1.9179 2.2375 39 1 2.7131 -3.9431 1.4122 40 1 4.2550 -3.0537 1.4116 41 1 4.0399 -2.6780 3.8529 42 1 2.4981 -3.5673 3.8540 43 1 4.3420 -4.9791 6.7122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416556447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:46 Heat of formation + Delta-G solvation = -73.713385 kcal Electronic energy + Delta-G solvation = -21738.043247 eV Core-core repulsion = 18524.446264 eV Total energy + Delta-G solvation = -3213.596983 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18705 -36.92385 -35.75927 -35.08502 -34.64981 -32.17889 -30.07562 -27.81231 -27.70432 -26.62070 -25.92243 -23.70973 -21.89534 -20.49956 -18.76041 -18.45279 -17.61893 -16.64334 -16.37083 -15.77160 -15.22119 -15.11535 -14.67069 -14.47096 -14.18183 -13.69384 -13.54112 -13.10371 -13.05558 -12.68384 -12.57426 -12.27899 -12.19769 -11.94359 -11.88513 -11.81595 -11.75880 -11.57063 -11.53617 -11.22886 -10.96876 -10.92025 -10.84210 -10.47017 -10.36599 -10.26690 -9.94644 -9.46919 -9.20791 -8.86293 -8.40680 -6.05628 -4.08643 0.45884 2.75096 3.30565 3.36582 3.40819 4.01596 4.20006 4.25040 4.32290 4.42676 4.52379 4.60107 4.73577 4.98275 5.16003 5.19278 5.21785 5.30701 5.35466 5.37175 5.38840 5.49234 5.55396 5.59572 5.62725 5.67433 5.72637 5.77290 5.89796 5.91004 5.97362 6.09232 6.26782 6.34047 6.46033 6.54449 6.87803 7.57196 7.67176 7.92474 8.33091 8.97602 9.56036 11.05595 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.003500 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.119163 B = 7997.424422 C = 8496.954956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.122 3.878 4 C -0.149 4.149 5 C -0.088 4.088 6 C -0.132 4.132 7 C -0.132 4.132 8 C -0.135 4.135 9 S 2.596 3.404 10 O -0.960 6.960 11 O -0.961 6.961 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.125 0.875 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 18.489 -10.685 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.831 5.831 3 C 0.015 3.985 4 C -0.188 4.188 5 C -0.089 4.089 6 C -0.190 4.190 7 C -0.190 4.190 8 C -0.175 4.175 9 S 2.694 3.306 10 O -0.951 6.951 11 O -0.952 6.952 12 C -0.740 4.740 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.143 0.857 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.556 18.000 -11.307 22.560 hybrid contribution 0.319 -0.651 0.996 1.232 sum -7.237 17.349 -10.312 21.440 Atomic orbital electron populations 1.21394 0.78798 1.02829 1.02082 1.57543 1.14805 1.21121 1.89614 1.22519 0.97282 0.81620 0.97037 1.23624 1.03022 0.95085 0.97071 1.21653 0.96283 0.93970 0.97003 1.21690 0.97507 0.98289 1.01477 1.21645 0.94658 1.00689 1.01958 1.23507 1.01556 0.94702 0.97689 1.05511 0.73751 0.72814 0.78570 1.93561 1.64684 1.62291 1.74541 1.93542 1.44118 1.82906 1.74615 1.30582 1.10537 1.09384 1.23463 1.21501 0.98158 0.90649 1.04221 1.19058 0.97383 0.96762 0.87529 1.21259 1.36201 1.06605 0.92383 0.92373 1.25021 0.95913 0.97560 0.95892 1.69961 1.46699 1.39041 0.97744 0.86552 0.80093 0.83558 0.77593 1.20558 1.21172 1.19731 0.92529 0.90911 0.91116 0.85719 0.90646 0.89282 0.92663 0.92615 0.92488 0.92120 0.92025 0.92334 0.89341 0.90932 0.85484 0.85559 0.91644 0.91635 0.96138 0.96145 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 8.81 59.85 0.53 1.42 16 2 N -1.00 -11.66 3.33 -113.64 -0.38 -12.04 16 3 C 0.12 1.27 3.90 -67.03 -0.26 1.01 16 4 C -0.15 -1.30 6.77 -25.92 -0.18 -1.48 16 5 C -0.09 -0.68 1.39 -153.69 -0.21 -0.90 16 6 C -0.13 -0.87 9.18 37.16 0.34 -0.53 16 7 C -0.13 -0.97 9.07 37.16 0.34 -0.64 16 8 C -0.14 -1.16 6.65 -25.83 -0.17 -1.33 16 9 S 2.60 39.83 5.38 -107.50 -0.58 39.25 16 10 O -0.96 -17.30 17.09 -57.54 -0.98 -18.29 16 11 O -0.96 -17.16 16.62 -57.54 -0.96 -18.12 16 12 C -0.61 -9.62 6.18 37.16 0.23 -9.39 16 13 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16 14 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 15 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.68 7.79 -51.93 -0.40 0.27 16 25 H 0.07 0.50 6.35 -51.93 -0.33 0.17 16 26 H 0.13 1.41 6.51 -51.93 -0.34 1.08 16 27 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.09 0.73 6.88 -51.93 -0.36 0.37 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.35 7.98 -51.93 -0.41 -0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.48 7.34 -51.93 -0.38 0.10 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.69 6.59 -51.93 -0.34 0.35 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.13 1.82 8.14 -51.92 -0.42 1.39 16 38 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -34.00 354.43 -9.51 -43.51 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -7.60 Total: -3.17 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -0.07 Total: -27.20 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.36 Total: -37.98 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.94 Total: -36.41 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 39.83 SS G_CDS: -0.58 Total: 39.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.00 -9.51 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416556447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.200 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds