Wall clock time and date at job start Tue Mar 31 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99751 * 2 1 4 4 C 1.53783 * 113.61762 * 60.00262 * 3 2 1 5 5 C 1.53785 * 87.07804 * 219.93175 * 4 3 2 6 6 C 1.53006 * 113.61096 * 139.97884 * 5 4 3 7 7 C 1.53002 * 113.61471 * 270.79457 * 5 4 3 8 8 C 1.53781 * 87.17620 * 25.38900 * 5 4 3 9 9 S 1.65603 * 119.99879 * 179.97438 * 2 1 3 10 10 O 1.42098 * 104.27400 * 26.07393 * 9 2 1 11 11 O 1.42092 * 104.27298 * 153.92863 * 9 2 1 12 12 C 1.81397 * 104.45047 * 270.00229 * 9 2 1 13 13 C 1.52997 * 109.46909 * 179.97438 * 12 9 2 14 14 C 1.52999 * 109.47322 * 179.97438 * 13 12 9 15 15 C 1.50698 * 109.47422 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00101 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99732 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00179 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47499 * 89.99432 * 19 17 15 21 21 H 1.48504 * 109.47013 * 210.00058 * 19 17 15 22 22 H 1.48506 * 109.46772 * 329.99440 * 19 17 15 23 23 H 1.09001 * 109.47048 * 89.99948 * 1 2 3 24 24 H 1.08999 * 109.47222 * 209.99953 * 1 2 3 25 25 H 1.08998 * 109.47088 * 330.00042 * 1 2 3 26 26 H 1.09004 * 112.84918 * 191.19713 * 3 2 1 27 27 H 1.08997 * 113.61737 * 105.38241 * 4 3 2 28 28 H 1.09000 * 113.61138 * 334.47382 * 4 3 2 29 29 H 1.09001 * 109.47002 * 181.52532 * 6 5 4 30 30 H 1.08993 * 109.46955 * 301.52970 * 6 5 4 31 31 H 1.09000 * 109.47050 * 61.52798 * 6 5 4 32 32 H 1.08999 * 109.47105 * 298.47603 * 7 5 4 33 33 H 1.09000 * 109.46611 * 58.47476 * 7 5 4 34 34 H 1.08998 * 109.47047 * 178.47668 * 7 5 4 35 35 H 1.08998 * 113.61545 * 89.15547 * 8 5 4 36 36 H 1.08993 * 113.61303 * 220.06004 * 8 5 4 37 37 H 1.09000 * 109.47052 * 299.99939 * 12 9 2 38 38 H 1.08998 * 109.47285 * 60.00322 * 12 9 2 39 39 H 1.09002 * 109.47815 * 300.00116 * 13 12 9 40 40 H 1.09004 * 109.47157 * 60.00104 * 13 12 9 41 41 H 1.09000 * 109.47669 * 300.01104 * 14 13 12 42 42 H 1.09004 * 109.46524 * 60.00201 * 14 13 12 43 43 H 0.97008 * 119.99714 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 1.8954 2.1545 1.2203 5 6 1.9151 3.3528 0.2566 6 6 0.8286 4.3903 0.5464 7 6 3.3013 3.9768 0.0829 8 6 1.5405 2.3638 -0.8599 9 16 2.2930 -1.4342 0.0006 10 8 1.3969 -2.3563 -0.6042 11 8 3.5394 -1.1194 -0.6047 12 6 2.5193 -1.8255 1.7574 13 6 3.2807 -3.1456 1.8918 14 6 3.4722 -3.4754 3.3735 15 6 4.2227 -4.7755 3.5060 16 1 4.5326 -5.3125 2.6218 17 6 4.5138 -5.2792 4.7560 18 7 4.1369 -4.6249 5.8327 19 14 5.4448 -6.8903 4.9202 20 1 6.9037 -6.6168 4.9636 21 1 5.0320 -7.5752 6.1715 22 1 5.1386 -7.7598 3.7559 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 3.2624 1.1426 -0.1951 27 1 2.6991 2.1727 1.9563 28 1 0.9176 1.9674 1.6642 29 1 0.8868 5.1925 -0.1892 30 1 -0.1511 3.9158 0.4899 31 1 0.9761 4.8016 1.5450 32 1 3.6529 4.3539 1.0432 33 1 3.9955 3.2224 -0.2874 34 1 3.2429 4.7985 -0.6308 35 1 0.4656 2.2340 -0.9856 36 1 2.0581 2.5508 -1.8006 37 1 3.0866 -1.0279 2.2371 38 1 1.5451 -1.9179 2.2375 39 1 2.7131 -3.9431 1.4122 40 1 4.2550 -3.0537 1.4116 41 1 4.0399 -2.6780 3.8529 42 1 2.4981 -3.5673 3.8540 43 1 4.3420 -4.9791 6.7122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416556447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:45 Heat of formation + Delta-G solvation = -95.704419 kcal Electronic energy + Delta-G solvation = -21738.996850 eV Core-core repulsion = 18524.446264 eV Total energy + Delta-G solvation = -3214.550586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89308 -38.25925 -37.09134 -36.49375 -35.92432 -34.18036 -30.73400 -29.67569 -28.26688 -27.41678 -26.60531 -25.61593 -22.88375 -22.15122 -19.87865 -19.17254 -18.72846 -18.53992 -17.46922 -17.24629 -16.50995 -16.34692 -15.86478 -15.60783 -15.37661 -14.52029 -14.42244 -14.24900 -14.07169 -13.78383 -13.69488 -13.62492 -13.54004 -13.22200 -13.10895 -13.00383 -12.77880 -12.75580 -12.64174 -12.52529 -12.37949 -12.25296 -12.15135 -11.78028 -11.61406 -11.40621 -11.19630 -11.00663 -10.90482 -10.58987 -9.85261 -8.24034 -6.35320 -0.78485 1.39371 1.40247 1.51697 1.66169 2.38873 2.77667 3.09323 3.12209 3.49740 3.57364 3.71316 3.85323 3.87810 3.89701 4.00726 4.36087 4.38466 4.53666 4.59909 4.67004 4.70731 4.80959 4.85932 4.90108 4.93433 4.95553 5.00585 5.02423 5.05630 5.10252 5.22312 5.29244 5.31816 5.43071 5.50280 5.60147 5.65516 5.71151 5.77446 6.17940 6.79979 7.34068 8.87485 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.003500 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.119163 B = 7997.424422 C = 8496.954956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.987 5.987 3 C 0.105 3.895 4 C -0.147 4.147 5 C -0.082 4.082 6 C -0.130 4.130 7 C -0.135 4.135 8 C -0.130 4.130 9 S 2.619 3.381 10 O -0.987 6.987 11 O -0.989 6.989 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.032 3.968 15 C -0.554 4.554 16 H 0.060 0.940 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.964 3.036 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.265 1.265 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.504 19.378 -11.062 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.824 5.824 3 C -0.001 4.001 4 C -0.186 4.186 5 C -0.083 4.083 6 C -0.187 4.187 7 C -0.192 4.192 8 C -0.170 4.170 9 S 2.716 3.284 10 O -0.978 6.978 11 O -0.979 6.979 12 C -0.738 4.738 13 C -0.145 4.145 14 C -0.006 4.006 15 C -0.592 4.592 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.189 1.189 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.262 18.883 -11.687 23.694 hybrid contribution 0.509 -0.845 1.106 1.482 sum -7.753 18.037 -10.581 22.303 Atomic orbital electron populations 1.21690 0.77045 1.04380 1.03055 1.57255 1.15770 1.20088 1.89299 1.22764 0.96823 0.81305 0.99159 1.23659 1.03461 0.94937 0.96549 1.21627 0.96808 0.93895 0.95973 1.21677 0.97205 0.98053 1.01790 1.21676 0.94420 1.00745 1.02378 1.23540 1.02083 0.93714 0.97644 1.04592 0.73011 0.73156 0.77658 1.93520 1.65237 1.64030 1.74970 1.93501 1.45840 1.83519 1.75062 1.30540 1.11013 1.07208 1.25060 1.21314 0.99084 0.93388 1.00739 1.18950 0.95727 0.95369 0.90558 1.21735 1.36759 1.07908 0.92783 0.92219 1.25941 0.96761 1.01308 0.95520 1.70072 1.47729 1.40817 0.98301 0.85467 0.78830 0.79028 0.77883 1.19664 1.20439 1.18911 0.91926 0.90769 0.88233 0.87114 0.90967 0.88202 0.92047 0.91941 0.92283 0.91824 0.92981 0.91389 0.88108 0.91028 0.84039 0.83816 0.91652 0.91717 0.97924 0.97860 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 8.81 127.77 1.13 2.50 16 2 N -0.99 -21.68 3.33 -513.45 -1.71 -23.39 16 3 C 0.11 2.06 3.90 45.58 0.18 2.24 16 4 C -0.15 -2.29 6.77 31.12 0.21 -2.08 16 5 C -0.08 -1.09 1.39 -51.65 -0.07 -1.16 16 6 C -0.13 -1.35 9.18 71.98 0.66 -0.69 16 7 C -0.14 -1.80 9.07 71.98 0.65 -1.14 16 8 C -0.13 -1.96 6.65 31.18 0.21 -1.76 16 9 S 2.62 79.15 5.38 -56.49 -0.30 78.84 16 10 O -0.99 -35.13 17.09 -127.65 -2.18 -37.31 16 11 O -0.99 -35.38 16.62 -127.65 -2.12 -37.50 16 12 C -0.61 -19.00 6.18 71.98 0.44 -18.56 16 13 C -0.11 -4.43 5.16 30.59 0.16 -4.27 16 14 C 0.03 1.69 4.97 29.85 0.15 1.83 16 15 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 0.17 5.46 84.66 0.46 0.64 16 18 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 19 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 1.23 7.79 -2.39 -0.02 1.22 16 25 H 0.10 1.08 6.35 -2.39 -0.02 1.07 16 26 H 0.11 2.49 6.51 -2.39 -0.02 2.47 16 27 H 0.07 1.17 8.10 -2.39 -0.02 1.16 16 28 H 0.10 1.34 6.88 -2.39 -0.02 1.32 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.58 7.98 -2.39 -0.02 0.56 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.78 7.34 -2.39 -0.02 0.77 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 1.27 6.59 -2.39 -0.02 1.26 16 36 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 37 H 0.14 3.97 8.14 -2.39 -0.02 3.96 16 38 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 39 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 41 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 43 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -72.82 354.43 1.36 -71.45 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.96 Total: 11.25 kcal Atomic # 6 Polarization: -58.52 SS G_CDS: 4.41 Total: -54.11 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -1.42 Total: -79.09 kcal Atomic # 8 Polarization: -70.51 SS G_CDS: -4.30 Total: -74.81 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 79.15 SS G_CDS: -0.30 Total: 78.84 kcal Total: -72.82 1.36 -71.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416556447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.252 kcal (2) G-P(sol) polarization free energy of solvation -72.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds