Wall clock time and date at job start Tue Mar 31 2020 06:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35982 * 117.00229 * 2 1 4 4 C 1.38701 * 119.99934 * 180.02562 * 3 2 1 5 5 C 1.38127 * 119.99789 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.99853 * 180.02562 * 5 4 3 7 7 C 1.38705 * 120.00073 * 0.02562 * 5 4 3 8 8 O 1.35986 * 119.99695 * 179.72441 * 7 5 4 9 9 C 1.42897 * 117.00208 * 89.99982 * 8 7 5 10 10 C 1.52998 * 109.46897 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47265 * 304.99182 * 10 9 8 12 12 C 1.47199 * 109.47578 * 64.99809 * 10 9 8 13 13 N 8.67057 * 131.89148 * 0.83711 * 2 1 3 14 14 C 1.53004 * 109.47087 * 184.99822 * 10 9 8 15 15 C 1.50701 * 109.47244 * 174.99878 * 14 10 9 16 16 H 1.07995 * 120.00186 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99653 * 180.02562 * 15 14 10 18 18 N 1.31514 * 120.00335 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99607 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47224 * 59.99659 * 19 17 15 21 21 H 1.48499 * 109.46942 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47119 * 299.99885 * 19 17 15 23 23 C 1.38695 * 119.99786 * 359.97438 * 7 5 4 24 24 C 1.50706 * 119.99524 * 179.97438 * 23 7 5 25 25 C 1.38126 * 120.00140 * 359.97438 * 23 7 5 26 26 H 1.08997 * 109.47493 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47009 * 300.00340 * 1 2 3 28 28 H 1.08995 * 109.46845 * 59.99816 * 1 2 3 29 29 H 1.08001 * 119.99832 * 0.02562 * 4 3 2 30 30 H 1.09002 * 109.46961 * 269.97732 * 6 5 4 31 31 H 1.08993 * 109.47341 * 29.98261 * 6 5 4 32 32 H 1.09001 * 109.46864 * 149.98345 * 6 5 4 33 33 H 1.08997 * 109.47008 * 299.99274 * 9 8 7 34 34 H 1.08999 * 109.47509 * 59.99615 * 9 8 7 35 35 H 1.08999 * 109.47494 * 294.99981 * 14 10 9 36 36 H 1.09001 * 109.47117 * 54.99863 * 14 10 9 37 37 H 0.97000 * 119.99449 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.46563 * 90.00459 * 24 23 7 39 39 H 1.08998 * 109.46941 * 210.00411 * 24 23 7 40 40 H 1.08998 * 109.47482 * 330.00560 * 24 23 7 41 41 H 1.08005 * 119.99853 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2841 -0.0005 5 6 4.0586 2.5148 -0.0011 6 6 5.5636 2.5936 -0.0022 7 6 3.3032 3.6781 -0.0005 8 8 3.9207 4.8897 0.0046 9 6 4.2194 5.4710 -1.2661 10 6 4.9069 6.8222 -1.0598 11 1 4.2829 7.4547 -0.4285 12 6 6.2113 6.6150 -0.4100 13 7 7.2186 6.4538 0.0943 14 6 5.1144 7.5010 -2.4152 15 6 5.6786 8.8824 -2.2041 16 1 5.8697 9.2405 -1.2033 17 6 5.9499 9.6894 -3.2886 18 7 5.7159 9.2539 -4.5073 19 14 6.6486 11.4019 -3.0268 20 1 7.9502 11.3027 -2.3189 21 1 6.8501 12.0607 -4.3424 22 1 5.7014 12.2036 -2.2111 23 6 1.9182 3.6055 0.0000 24 6 1.0975 4.8695 0.0012 25 6 1.2911 2.3748 -0.0005 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 4.0197 0.3783 -0.0014 30 1 5.9272 2.6131 1.0252 31 1 5.9726 1.7238 -0.5160 32 1 5.8794 3.5012 -0.5166 33 1 4.8813 4.8075 -1.8226 34 1 3.2954 5.6156 -1.8259 35 1 5.8095 6.9123 -3.0139 36 1 4.1591 7.5743 -2.9350 37 1 5.9072 9.8216 -5.2702 38 1 0.8992 5.1748 -1.0262 39 1 0.1534 4.6892 0.5153 40 1 1.6462 5.6586 0.5152 41 1 0.2125 2.3183 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424137064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:16 Heat of formation + Delta-G solvation = -45.473161 kcal Electronic energy + Delta-G solvation = -22361.752559 eV Core-core repulsion = 19013.936212 eV Total energy + Delta-G solvation = -3347.816346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59950 -39.03178 -37.02019 -35.76879 -33.74647 -33.68779 -31.94402 -30.47395 -28.05393 -27.69152 -26.48936 -26.15119 -23.60408 -21.89363 -21.56041 -20.98656 -17.66943 -17.55179 -17.31592 -16.77673 -16.35687 -15.95451 -15.04040 -14.67518 -14.61567 -14.12937 -13.76804 -13.43049 -13.27894 -13.16677 -13.12866 -12.93261 -12.61286 -12.34405 -12.24753 -12.15725 -11.96682 -11.93234 -11.68206 -11.31224 -11.15088 -11.02270 -10.78729 -10.62396 -10.58239 -10.30386 -9.69931 -9.64264 -9.32919 -8.74805 -8.49288 -8.02346 -6.13794 -4.17481 1.17835 1.21135 3.06488 3.29407 3.33681 3.33799 3.38710 3.59527 3.69114 4.01719 4.38869 4.59485 4.66225 4.74522 4.85057 4.88911 4.97327 5.15360 5.21792 5.24431 5.34050 5.45788 5.48932 5.56220 5.60356 5.64885 5.67195 5.71674 5.85314 5.88100 6.11483 6.21003 6.26284 6.32463 6.39698 6.54089 6.55324 7.17214 7.33985 7.43718 7.70925 7.81338 8.16756 8.44466 8.86507 9.48266 10.97053 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027148 B = 0.003306 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.143716 B = 8467.810107 C = 8965.191956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.148 4.148 5 C -0.057 4.057 6 C -0.113 4.113 7 C 0.065 3.935 8 O -0.330 6.330 9 C 0.072 3.928 10 C 0.012 3.988 11 H 0.111 0.889 12 C 0.246 3.754 13 N -0.471 5.471 14 C 0.034 3.966 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.057 4.057 24 C -0.117 4.117 25 C -0.204 4.204 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.132 0.868 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.028 0.972 36 H 0.041 0.959 37 H 0.264 0.736 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.848 -16.208 6.918 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.167 4.167 5 C -0.058 4.058 6 C -0.169 4.169 7 C 0.021 3.979 8 O -0.247 6.247 9 C -0.003 4.003 10 C -0.010 4.010 11 H 0.129 0.871 12 C -0.071 4.071 13 N -0.147 5.147 14 C -0.004 4.004 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.058 4.058 24 C -0.173 4.173 25 C -0.223 4.223 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.178 -16.474 7.637 21.323 hybrid contribution -0.336 1.046 -0.363 1.157 sum -11.514 -15.428 7.275 20.579 Atomic orbital electron populations 1.23037 0.78530 1.03762 1.01416 1.86073 1.21276 1.26962 1.88938 1.18927 0.92171 0.84022 0.97024 1.20115 0.91199 0.97674 1.07701 1.20022 0.96759 0.91608 0.97403 1.20739 0.90058 1.03144 1.02964 1.18224 0.89579 0.85155 1.04979 1.86094 1.77824 1.30895 1.29884 1.22950 0.99687 0.93596 0.84072 1.19285 0.85747 0.94948 1.00997 0.87101 1.29009 0.94516 0.91659 0.91897 1.81084 1.12154 1.10178 1.11329 1.19158 0.98861 0.95155 0.87203 1.21055 1.43500 0.98969 0.93072 0.92372 1.24944 0.95290 0.98553 0.95091 1.69926 1.47871 1.37214 0.97927 0.86623 0.79801 0.84099 0.77391 1.20191 1.21157 1.19979 1.20009 0.93173 0.95342 0.97287 1.20772 0.98826 0.94799 1.02905 1.20949 0.99819 0.91285 1.10242 0.88382 0.92689 0.92605 0.85039 0.90649 0.91409 0.90800 0.92418 0.91027 0.95377 0.94097 0.92650 0.90673 0.91672 0.90060 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.43 10.50 -19.68 -0.21 -3.64 16 3 C 0.12 1.47 6.69 -39.24 -0.26 1.21 16 4 C -0.15 -1.83 9.64 -39.45 -0.38 -2.21 16 5 C -0.06 -0.77 5.89 -104.49 -0.62 -1.39 16 6 C -0.11 -1.45 9.79 36.01 0.35 -1.09 16 7 C 0.06 0.92 5.67 -39.24 -0.22 0.69 16 8 O -0.33 -5.11 8.05 -19.70 -0.16 -5.27 16 9 C 0.07 1.12 5.04 37.16 0.19 1.31 16 10 C 0.01 0.22 2.45 -93.41 -0.23 -0.01 16 11 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 12 C 0.25 5.12 13.72 -20.70 -0.28 4.84 16 13 N -0.47 -10.54 18.55 42.23 0.78 -9.76 16 14 C 0.03 0.78 4.42 -27.88 -0.12 0.66 16 15 C -0.53 -13.83 8.60 -34.44 -0.30 -14.13 16 16 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.06 -0.72 5.89 -104.49 -0.62 -1.33 16 24 C -0.12 -1.23 9.79 36.01 0.35 -0.88 16 25 C -0.20 -2.28 8.69 -39.45 -0.34 -2.62 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.07 1.08 6.30 -51.93 -0.33 0.75 16 33 H 0.06 0.89 7.23 -51.93 -0.38 0.52 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.08 0.93 7.52 -51.93 -0.39 0.54 16 41 H 0.13 1.12 6.29 -52.48 -0.33 0.79 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -30.60 352.56 -6.11 -36.72 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.97 Total: -2.89 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.58 Total: -12.14 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 1.52 Total: -34.14 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.37 Total: -8.90 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.60 -6.11 -36.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424137064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.757 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds