Wall clock time and date at job start Tue Mar 31 2020 06:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35982 * 117.00229 * 2 1 4 4 C 1.38701 * 119.99934 * 180.02562 * 3 2 1 5 5 C 1.38127 * 119.99789 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.99853 * 180.02562 * 5 4 3 7 7 C 1.38705 * 120.00073 * 0.02562 * 5 4 3 8 8 O 1.35986 * 119.99695 * 179.72441 * 7 5 4 9 9 C 1.42897 * 117.00208 * 89.99982 * 8 7 5 10 10 C 1.52998 * 109.46897 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47265 * 304.99182 * 10 9 8 12 12 C 1.47199 * 109.47578 * 64.99809 * 10 9 8 13 13 N 8.67057 * 131.89148 * 0.83711 * 2 1 3 14 14 C 1.53004 * 109.47087 * 184.99822 * 10 9 8 15 15 C 1.50701 * 109.47244 * 174.99878 * 14 10 9 16 16 H 1.07995 * 120.00186 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99653 * 180.02562 * 15 14 10 18 18 N 1.31514 * 120.00335 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99607 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47224 * 59.99659 * 19 17 15 21 21 H 1.48499 * 109.46942 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47119 * 299.99885 * 19 17 15 23 23 C 1.38695 * 119.99786 * 359.97438 * 7 5 4 24 24 C 1.50706 * 119.99524 * 179.97438 * 23 7 5 25 25 C 1.38126 * 120.00140 * 359.97438 * 23 7 5 26 26 H 1.08997 * 109.47493 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47009 * 300.00340 * 1 2 3 28 28 H 1.08995 * 109.46845 * 59.99816 * 1 2 3 29 29 H 1.08001 * 119.99832 * 0.02562 * 4 3 2 30 30 H 1.09002 * 109.46961 * 269.97732 * 6 5 4 31 31 H 1.08993 * 109.47341 * 29.98261 * 6 5 4 32 32 H 1.09001 * 109.46864 * 149.98345 * 6 5 4 33 33 H 1.08997 * 109.47008 * 299.99274 * 9 8 7 34 34 H 1.08999 * 109.47509 * 59.99615 * 9 8 7 35 35 H 1.08999 * 109.47494 * 294.99981 * 14 10 9 36 36 H 1.09001 * 109.47117 * 54.99863 * 14 10 9 37 37 H 0.97000 * 119.99449 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.46563 * 90.00459 * 24 23 7 39 39 H 1.08998 * 109.46941 * 210.00411 * 24 23 7 40 40 H 1.08998 * 109.47482 * 330.00560 * 24 23 7 41 41 H 1.08005 * 119.99853 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2841 -0.0005 5 6 4.0586 2.5148 -0.0011 6 6 5.5636 2.5936 -0.0022 7 6 3.3032 3.6781 -0.0005 8 8 3.9207 4.8897 0.0046 9 6 4.2194 5.4710 -1.2661 10 6 4.9069 6.8222 -1.0598 11 1 4.2829 7.4547 -0.4285 12 6 6.2113 6.6150 -0.4100 13 7 7.2186 6.4538 0.0943 14 6 5.1144 7.5010 -2.4152 15 6 5.6786 8.8824 -2.2041 16 1 5.8697 9.2405 -1.2033 17 6 5.9499 9.6894 -3.2886 18 7 5.7159 9.2539 -4.5073 19 14 6.6486 11.4019 -3.0268 20 1 7.9502 11.3027 -2.3189 21 1 6.8501 12.0607 -4.3424 22 1 5.7014 12.2036 -2.2111 23 6 1.9182 3.6055 0.0000 24 6 1.0975 4.8695 0.0012 25 6 1.2911 2.3748 -0.0005 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 4.0197 0.3783 -0.0014 30 1 5.9272 2.6131 1.0252 31 1 5.9726 1.7238 -0.5160 32 1 5.8794 3.5012 -0.5166 33 1 4.8813 4.8075 -1.8226 34 1 3.2954 5.6156 -1.8259 35 1 5.8095 6.9123 -3.0139 36 1 4.1591 7.5743 -2.9350 37 1 5.9072 9.8216 -5.2702 38 1 0.8992 5.1748 -1.0262 39 1 0.1534 4.6892 0.5153 40 1 1.6462 5.6586 0.5152 41 1 0.2125 2.3183 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424137064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:13 Heat of formation + Delta-G solvation = -61.550851 kcal Electronic energy + Delta-G solvation = -22362.449740 eV Core-core repulsion = 19013.936212 eV Total energy + Delta-G solvation = -3348.513527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52690 -40.00350 -38.32797 -37.10358 -35.58001 -34.60202 -33.73499 -31.40170 -29.20370 -28.72509 -27.65609 -27.04516 -25.15615 -23.62249 -22.52576 -21.90085 -18.89443 -18.66324 -18.39740 -18.28518 -17.74108 -16.70228 -16.54601 -16.28301 -15.62641 -15.12392 -14.95328 -14.67594 -14.48110 -14.27806 -14.12071 -14.05161 -14.02894 -13.77700 -13.72344 -13.22504 -13.02640 -12.89345 -12.87542 -12.85323 -12.58367 -12.48167 -12.38544 -12.02635 -11.90158 -11.58028 -11.41223 -11.25319 -10.75647 -10.55206 -9.66066 -8.96403 -8.20109 -6.28517 0.23117 0.27522 1.42250 1.43936 1.50903 1.90892 1.99065 2.31963 2.38488 2.44984 2.93711 3.13807 3.19983 3.75758 3.77482 4.07419 4.14689 4.22126 4.26920 4.36549 4.43882 4.44198 4.53434 4.58227 4.63257 4.67321 4.75603 4.80115 4.81401 4.86164 4.89287 4.96675 5.25496 5.32529 5.39562 5.43394 5.56051 5.59123 5.61655 5.76997 6.15848 6.36563 6.64245 6.75127 6.85869 7.40057 8.90654 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027148 B = 0.003306 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.143716 B = 8467.810107 C = 8965.191956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.123 3.877 4 C -0.158 4.158 5 C -0.068 4.068 6 C -0.110 4.110 7 C 0.035 3.965 8 O -0.337 6.337 9 C 0.082 3.918 10 C 0.022 3.978 11 H 0.128 0.872 12 C 0.254 3.746 13 N -0.501 5.501 14 C 0.042 3.958 15 C -0.541 4.541 16 H 0.056 0.944 17 C 0.014 3.986 18 N -0.922 5.922 19 Si 0.949 3.051 20 H -0.282 1.282 21 H -0.282 1.282 22 H -0.262 1.262 23 C -0.060 4.060 24 C -0.116 4.116 25 C -0.202 4.202 26 H 0.119 0.881 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.142 0.858 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.005 0.995 36 H 0.042 0.958 37 H 0.265 0.735 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.779 -16.771 7.448 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.078 3.922 4 C -0.177 4.177 5 C -0.069 4.069 6 C -0.166 4.166 7 C -0.009 4.009 8 O -0.255 6.255 9 C 0.007 3.993 10 C 0.001 3.999 11 H 0.146 0.854 12 C -0.062 4.062 13 N -0.179 5.179 14 C 0.003 3.997 15 C -0.579 4.579 16 H 0.074 0.926 17 C -0.185 4.185 18 N -0.561 5.561 19 Si 0.774 3.226 20 H -0.208 1.208 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.061 4.061 24 C -0.172 4.172 25 C -0.220 4.220 26 H 0.137 0.863 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.160 0.840 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.023 0.977 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.125 -17.045 8.181 23.016 hybrid contribution 0.186 1.096 -0.503 1.220 sum -12.940 -15.949 7.677 21.926 Atomic orbital electron populations 1.23368 0.76342 1.05642 1.02386 1.86067 1.23560 1.26381 1.88594 1.19072 0.92216 0.84828 0.96086 1.20265 0.91961 0.97609 1.07866 1.20106 0.96824 0.92040 0.97893 1.20702 0.90320 1.02818 1.02788 1.18472 0.90546 0.84620 1.07240 1.86058 1.78286 1.31781 1.29372 1.22735 1.00075 0.91882 0.84645 1.19185 0.85153 0.96848 0.98716 0.85429 1.29474 0.94700 0.90696 0.91311 1.81073 1.13040 1.11391 1.12373 1.18955 0.97930 0.93717 0.89053 1.21460 1.43025 1.00486 0.92883 0.92624 1.25685 0.95850 1.01984 0.95018 1.70017 1.49118 1.38458 0.98546 0.85745 0.78933 0.80422 0.77468 1.20750 1.20687 1.18684 1.20245 0.92632 0.96651 0.96576 1.20816 0.99348 0.93563 1.03509 1.21220 1.01195 0.90432 1.09152 0.86251 0.91602 0.91640 0.83992 0.90805 0.89676 0.92964 0.92839 0.89154 0.97682 0.93991 0.92608 0.89956 0.89438 0.91198 0.82531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.39 10.50 -93.35 -0.98 -7.37 16 3 C 0.12 2.70 6.69 22.49 0.15 2.85 16 4 C -0.16 -3.75 9.64 22.35 0.22 -3.53 16 5 C -0.07 -1.80 5.89 -19.78 -0.12 -1.92 16 6 C -0.11 -2.85 9.79 71.24 0.70 -2.15 16 7 C 0.03 0.96 5.67 22.49 0.13 1.09 16 8 O -0.34 -10.32 8.05 -93.39 -0.75 -11.07 16 9 C 0.08 2.51 5.04 71.98 0.36 2.87 16 10 C 0.02 0.82 2.45 -12.60 -0.03 0.79 16 11 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 12 C 0.25 10.66 13.72 89.42 1.23 11.88 16 13 N -0.50 -22.71 18.55 20.03 0.37 -22.34 16 14 C 0.04 1.90 4.42 29.85 0.13 2.03 16 15 C -0.54 -28.30 8.60 25.60 0.22 -28.08 16 16 H 0.06 2.88 7.59 -2.91 -0.02 2.86 16 17 C 0.01 0.75 5.46 84.66 0.46 1.22 16 18 N -0.92 -52.20 13.29 21.45 0.28 -51.92 16 19 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 23 C -0.06 -1.40 5.89 -19.78 -0.12 -1.51 16 24 C -0.12 -2.19 9.79 71.24 0.70 -1.49 16 25 C -0.20 -4.00 8.69 22.35 0.19 -3.80 16 26 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 28 H 0.06 0.56 7.66 -2.39 -0.02 0.55 16 29 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 32 H 0.05 1.57 6.30 -2.39 -0.02 1.55 16 33 H 0.05 1.67 7.23 -2.39 -0.02 1.66 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 40 H 0.07 1.49 7.52 -2.39 -0.02 1.47 16 41 H 0.16 2.14 6.29 -2.91 -0.02 2.12 16 Total: -1.00 -65.10 352.56 7.31 -57.79 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.02 Total: 8.36 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 5.33 Total: -18.46 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: 0.66 Total: -74.25 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -1.73 Total: -18.45 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -65.10 7.31 -57.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424137064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.758 kcal (2) G-P(sol) polarization free energy of solvation -65.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds