Wall clock time and date at job start Tue Mar 31 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35979 * 116.99888 * 2 1 4 4 C 1.38702 * 119.99656 * 179.97438 * 3 2 1 5 5 C 1.38135 * 119.99558 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.99848 * 180.02562 * 5 4 3 7 7 C 1.38689 * 120.00444 * 359.97438 * 5 4 3 8 8 O 1.35979 * 120.00404 * 180.02562 * 7 5 4 9 9 C 1.42905 * 117.00260 * 89.99903 * 8 7 5 10 10 C 1.52997 * 109.47264 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47192 * 54.99822 * 10 9 8 12 12 C 1.47209 * 109.46866 * 294.99890 * 10 9 8 13 13 N 8.67068 * 102.10662 * 0.43345 * 2 1 3 14 14 C 1.53001 * 109.47242 * 175.00315 * 10 9 8 15 15 C 1.50699 * 109.47005 * 184.99914 * 14 10 9 16 16 H 1.07991 * 120.00133 * 0.02562 * 15 14 10 17 17 C 1.37880 * 119.99671 * 179.97438 * 15 14 10 18 18 N 1.31521 * 120.00123 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99878 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47492 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47155 * 120.00717 * 19 17 15 22 22 H 1.48499 * 109.47223 * 240.00207 * 19 17 15 23 23 C 1.38701 * 119.99880 * 0.27709 * 7 5 4 24 24 C 1.50704 * 120.00089 * 179.72571 * 23 7 5 25 25 C 1.38133 * 120.00143 * 359.50947 * 23 7 5 26 26 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46733 * 299.99827 * 1 2 3 28 28 H 1.08999 * 109.47277 * 59.99898 * 1 2 3 29 29 H 1.08000 * 120.00381 * 359.97438 * 4 3 2 30 30 H 1.09000 * 109.47077 * 269.98018 * 6 5 4 31 31 H 1.09004 * 109.46910 * 29.97226 * 6 5 4 32 32 H 1.08994 * 109.47418 * 149.97676 * 6 5 4 33 33 H 1.09001 * 109.47103 * 300.00642 * 9 8 7 34 34 H 1.09004 * 109.47054 * 60.00146 * 9 8 7 35 35 H 1.09005 * 109.46584 * 305.00085 * 14 10 9 36 36 H 1.09000 * 109.47396 * 64.99207 * 14 10 9 37 37 H 0.96996 * 119.99988 * 180.02562 * 18 17 15 38 38 H 1.09005 * 109.46606 * 90.00064 * 24 23 7 39 39 H 1.08997 * 109.47108 * 209.99365 * 24 23 7 40 40 H 1.08997 * 109.47144 * 330.00319 * 24 23 7 41 41 H 1.07993 * 120.00520 * 180.27557 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0585 2.5149 0.0000 6 6 5.5635 2.5938 0.0000 7 6 3.3032 3.6781 -0.0016 8 8 3.9205 4.8897 -0.0027 9 6 4.2157 5.4664 -1.2764 10 6 4.9047 6.8178 -1.0771 11 1 5.7830 6.6881 -0.4448 12 6 3.9700 7.7548 -0.4325 13 7 3.2475 8.4776 0.0641 14 6 5.3323 7.3776 -2.4353 15 6 6.1181 8.6470 -2.2306 16 1 6.2953 9.0173 -1.2318 17 6 6.6119 9.3352 -3.3186 18 7 6.3966 8.8839 -4.5351 19 14 7.5854 10.9091 -3.0650 20 1 7.6863 11.2001 -1.6123 21 1 8.9479 10.7452 -3.6324 22 1 6.8964 12.0329 -3.7487 23 6 1.9181 3.6056 0.0031 24 6 1.0973 4.8695 0.0076 25 6 1.2909 2.3748 -0.0008 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.0197 0.3784 0.0014 30 1 5.9263 2.6137 1.0277 31 1 5.9729 1.7236 -0.5130 32 1 5.8798 3.5011 -0.5145 33 1 4.8759 4.8008 -1.8325 34 1 3.2899 5.6089 -1.8340 35 1 5.9532 6.6449 -2.9510 36 1 4.4476 7.5906 -3.0354 37 1 6.7442 9.3678 -5.3005 38 1 0.8959 5.1755 -1.0190 39 1 0.1548 4.6888 0.5244 40 1 1.6477 5.6582 0.5205 41 1 0.2125 2.3183 -0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424137067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:23 Heat of formation + Delta-G solvation = -45.430866 kcal Electronic energy + Delta-G solvation = -22366.353512 eV Core-core repulsion = 19018.539000 eV Total energy + Delta-G solvation = -3347.814512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59907 -39.03130 -37.02855 -35.78705 -33.78162 -33.66738 -31.94644 -30.47612 -28.04978 -27.68863 -26.50315 -26.14344 -23.60589 -21.90112 -21.55152 -20.99121 -17.66616 -17.55873 -17.28597 -16.76362 -16.39610 -15.95619 -15.14157 -14.63086 -14.51573 -14.16619 -13.69952 -13.47500 -13.35594 -13.16030 -13.13285 -12.93365 -12.58581 -12.33873 -12.23486 -12.15935 -12.00379 -11.89857 -11.75110 -11.25923 -11.16603 -11.04194 -10.80418 -10.60312 -10.57673 -10.31059 -9.70946 -9.64188 -9.30203 -8.74833 -8.50209 -8.02255 -6.14214 -4.17692 1.17741 1.21101 3.06585 3.26518 3.33500 3.35295 3.40439 3.59824 3.69272 4.02080 4.38798 4.59628 4.66364 4.74626 4.85450 4.89134 4.97447 5.15106 5.21833 5.24173 5.33809 5.45897 5.51034 5.56613 5.58370 5.66138 5.67433 5.69990 5.84954 5.87191 6.12689 6.21896 6.25752 6.32098 6.39840 6.54486 6.54869 7.17009 7.34050 7.43463 7.70914 7.81435 8.16528 8.43897 8.86848 9.48193 10.96717 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027778 B = 0.003285 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.747618 B = 8521.260553 C = 8916.915489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.148 4.148 5 C -0.058 4.058 6 C -0.114 4.114 7 C 0.065 3.935 8 O -0.330 6.330 9 C 0.072 3.928 10 C 0.011 3.989 11 H 0.112 0.888 12 C 0.247 3.753 13 N -0.472 5.472 14 C 0.034 3.966 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.893 3.107 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.283 1.283 23 C -0.057 4.057 24 C -0.116 4.116 25 C -0.204 4.204 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.132 0.868 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 -18.454 7.041 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.078 3.922 4 C -0.167 4.167 5 C -0.058 4.058 6 C -0.170 4.170 7 C 0.021 3.979 8 O -0.247 6.247 9 C -0.003 4.003 10 C -0.010 4.010 11 H 0.129 0.871 12 C -0.070 4.070 13 N -0.148 5.148 14 C -0.005 4.005 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.058 4.058 24 C -0.172 4.172 25 C -0.223 4.223 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.304 -17.397 7.758 21.199 hybrid contribution 0.422 0.652 -0.391 0.870 sum -8.882 -16.745 7.367 20.336 Atomic orbital electron populations 1.23038 0.78540 1.03760 1.01419 1.86069 1.21267 1.26945 1.88940 1.18935 0.92227 0.83968 0.97029 1.20123 0.91139 0.97716 1.07719 1.20014 0.96896 0.91429 0.97485 1.20764 0.89870 1.03376 1.02993 1.18218 0.89550 0.85184 1.04979 1.86089 1.77810 1.30992 1.29819 1.22951 0.99781 0.93588 0.83976 1.19293 0.93552 0.87115 1.01070 0.87070 1.28942 0.93057 0.93084 0.91873 1.81010 1.11594 1.10842 1.11400 1.19170 0.97443 0.96692 0.87152 1.21129 1.34211 1.07945 0.93142 0.92262 1.24952 0.96116 0.97772 0.95110 1.69947 1.45529 1.39552 0.97892 0.86507 0.79726 0.83215 0.78481 1.19620 1.20792 1.20950 1.20019 0.93338 0.95217 0.97217 1.20752 0.98908 0.94851 1.02739 1.20948 0.99832 0.91283 1.10211 0.88357 0.92703 0.92627 0.84968 0.90590 0.91399 0.90335 0.90942 0.92503 0.94060 0.95392 0.92766 0.90920 0.91635 0.90335 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.43 10.50 -19.67 -0.21 -3.63 16 3 C 0.12 1.47 6.69 -39.24 -0.26 1.20 16 4 C -0.15 -1.76 9.64 -39.45 -0.38 -2.14 16 5 C -0.06 -0.73 5.89 -104.49 -0.62 -1.34 16 6 C -0.11 -1.22 9.79 36.01 0.35 -0.87 16 7 C 0.06 0.92 5.67 -39.24 -0.22 0.70 16 8 O -0.33 -5.10 8.05 -19.67 -0.16 -5.26 16 9 C 0.07 1.12 5.04 37.16 0.19 1.31 16 10 C 0.01 0.21 2.45 -93.40 -0.23 -0.02 16 11 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 12 C 0.25 5.14 13.71 -20.75 -0.28 4.85 16 13 N -0.47 -10.52 18.54 42.16 0.78 -9.74 16 14 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 15 C -0.53 -13.78 8.60 -34.44 -0.30 -14.07 16 16 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.06 -0.76 5.89 -104.49 -0.62 -1.38 16 24 C -0.12 -1.47 9.79 36.01 0.35 -1.11 16 25 C -0.20 -2.37 8.69 -39.45 -0.34 -2.72 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.08 0.90 6.31 -51.93 -0.33 0.57 16 33 H 0.07 1.01 7.25 -51.93 -0.38 0.63 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 40 H 0.08 1.16 7.53 -51.93 -0.39 0.76 16 41 H 0.13 1.20 6.29 -52.49 -0.33 0.87 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -30.59 352.58 -6.12 -36.70 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.98 Total: -2.91 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.59 Total: -12.16 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 1.52 Total: -34.10 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.36 Total: -8.90 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.59 -6.12 -36.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424137067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.729 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds