Wall clock time and date at job start Tue Mar 31 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35979 * 116.99888 * 2 1 4 4 C 1.38702 * 119.99656 * 179.97438 * 3 2 1 5 5 C 1.38135 * 119.99558 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.99848 * 180.02562 * 5 4 3 7 7 C 1.38689 * 120.00444 * 359.97438 * 5 4 3 8 8 O 1.35979 * 120.00404 * 180.02562 * 7 5 4 9 9 C 1.42905 * 117.00260 * 89.99903 * 8 7 5 10 10 C 1.52997 * 109.47264 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47192 * 54.99822 * 10 9 8 12 12 C 1.47209 * 109.46866 * 294.99890 * 10 9 8 13 13 N 8.67068 * 102.10662 * 0.43345 * 2 1 3 14 14 C 1.53001 * 109.47242 * 175.00315 * 10 9 8 15 15 C 1.50699 * 109.47005 * 184.99914 * 14 10 9 16 16 H 1.07991 * 120.00133 * 0.02562 * 15 14 10 17 17 C 1.37880 * 119.99671 * 179.97438 * 15 14 10 18 18 N 1.31521 * 120.00123 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99878 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47492 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47155 * 120.00717 * 19 17 15 22 22 H 1.48499 * 109.47223 * 240.00207 * 19 17 15 23 23 C 1.38701 * 119.99880 * 0.27709 * 7 5 4 24 24 C 1.50704 * 120.00089 * 179.72571 * 23 7 5 25 25 C 1.38133 * 120.00143 * 359.50947 * 23 7 5 26 26 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46733 * 299.99827 * 1 2 3 28 28 H 1.08999 * 109.47277 * 59.99898 * 1 2 3 29 29 H 1.08000 * 120.00381 * 359.97438 * 4 3 2 30 30 H 1.09000 * 109.47077 * 269.98018 * 6 5 4 31 31 H 1.09004 * 109.46910 * 29.97226 * 6 5 4 32 32 H 1.08994 * 109.47418 * 149.97676 * 6 5 4 33 33 H 1.09001 * 109.47103 * 300.00642 * 9 8 7 34 34 H 1.09004 * 109.47054 * 60.00146 * 9 8 7 35 35 H 1.09005 * 109.46584 * 305.00085 * 14 10 9 36 36 H 1.09000 * 109.47396 * 64.99207 * 14 10 9 37 37 H 0.96996 * 119.99988 * 180.02562 * 18 17 15 38 38 H 1.09005 * 109.46606 * 90.00064 * 24 23 7 39 39 H 1.08997 * 109.47108 * 209.99365 * 24 23 7 40 40 H 1.08997 * 109.47144 * 330.00319 * 24 23 7 41 41 H 1.07993 * 120.00520 * 180.27557 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0585 2.5149 0.0000 6 6 5.5635 2.5938 0.0000 7 6 3.3032 3.6781 -0.0016 8 8 3.9205 4.8897 -0.0027 9 6 4.2157 5.4664 -1.2764 10 6 4.9047 6.8178 -1.0771 11 1 5.7830 6.6881 -0.4448 12 6 3.9700 7.7548 -0.4325 13 7 3.2475 8.4776 0.0641 14 6 5.3323 7.3776 -2.4353 15 6 6.1181 8.6470 -2.2306 16 1 6.2953 9.0173 -1.2318 17 6 6.6119 9.3352 -3.3186 18 7 6.3966 8.8839 -4.5351 19 14 7.5854 10.9091 -3.0650 20 1 7.6863 11.2001 -1.6123 21 1 8.9479 10.7452 -3.6324 22 1 6.8964 12.0329 -3.7487 23 6 1.9181 3.6056 0.0031 24 6 1.0973 4.8695 0.0076 25 6 1.2909 2.3748 -0.0008 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.0197 0.3784 0.0014 30 1 5.9263 2.6137 1.0277 31 1 5.9729 1.7236 -0.5130 32 1 5.8798 3.5011 -0.5145 33 1 4.8759 4.8008 -1.8325 34 1 3.2899 5.6089 -1.8340 35 1 5.9532 6.6449 -2.9510 36 1 4.4476 7.5906 -3.0354 37 1 6.7442 9.3678 -5.3005 38 1 0.8959 5.1755 -1.0190 39 1 0.1548 4.6888 0.5244 40 1 1.6477 5.6582 0.5205 41 1 0.2125 2.3183 -0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424137067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:19 Heat of formation + Delta-G solvation = -61.439190 kcal Electronic energy + Delta-G solvation = -22367.047685 eV Core-core repulsion = 19018.539000 eV Total energy + Delta-G solvation = -3348.508685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.52888 -40.00607 -38.34185 -37.11371 -35.59184 -34.60765 -33.73679 -31.39205 -29.19919 -28.78362 -27.61442 -27.06034 -25.16021 -23.62451 -22.53929 -21.89158 -18.89374 -18.63381 -18.43717 -18.25858 -17.76299 -16.72659 -16.55600 -16.32441 -15.51422 -15.15011 -14.97808 -14.66846 -14.56182 -14.24431 -14.16737 -14.05590 -13.98031 -13.77259 -13.74829 -13.22851 -13.03714 -12.99016 -12.86029 -12.77148 -12.60283 -12.50822 -12.30926 -12.08240 -11.89825 -11.59340 -11.42215 -11.22675 -10.75893 -10.56083 -9.65633 -8.96776 -8.20525 -6.28695 0.23583 0.26711 1.39937 1.43262 1.53559 1.91745 1.99708 2.31698 2.38232 2.44705 2.94063 3.13722 3.20004 3.71189 3.79039 4.07154 4.14247 4.22142 4.30574 4.35994 4.41135 4.42317 4.51725 4.58275 4.64264 4.66365 4.73761 4.78821 4.80742 4.81058 4.89741 5.06560 5.19069 5.35266 5.38307 5.43608 5.55747 5.60607 5.61713 5.77134 6.15740 6.35360 6.63967 6.75091 6.86039 7.39996 8.90639 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027778 B = 0.003285 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.747618 B = 8521.260553 C = 8916.915489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.123 3.877 4 C -0.155 4.155 5 C -0.060 4.060 6 C -0.114 4.114 7 C 0.035 3.965 8 O -0.338 6.338 9 C 0.082 3.918 10 C 0.022 3.978 11 H 0.128 0.872 12 C 0.255 3.745 13 N -0.501 5.501 14 C 0.041 3.959 15 C -0.538 4.538 16 H 0.055 0.945 17 C 0.013 3.987 18 N -0.922 5.922 19 Si 0.949 3.051 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.285 1.285 23 C -0.069 4.069 24 C -0.112 4.112 25 C -0.204 4.204 26 H 0.121 0.879 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.149 0.851 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.005 0.995 37 H 0.265 0.735 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.521 -19.939 7.552 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.077 3.923 4 C -0.173 4.173 5 C -0.061 4.061 6 C -0.170 4.170 7 C -0.008 4.008 8 O -0.255 6.255 9 C 0.007 3.993 10 C 0.000 4.000 11 H 0.145 0.855 12 C -0.061 4.061 13 N -0.179 5.179 14 C 0.003 3.997 15 C -0.576 4.576 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.775 3.225 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.211 1.211 23 C -0.070 4.070 24 C -0.168 4.168 25 C -0.223 4.223 26 H 0.139 0.861 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.167 0.833 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.448 -18.893 8.281 22.689 hybrid contribution 0.378 1.000 -0.524 1.190 sum -9.070 -17.893 7.757 21.508 Atomic orbital electron populations 1.23351 0.76533 1.05644 1.02178 1.86066 1.23373 1.26303 1.88602 1.19102 0.92512 0.84518 0.96131 1.20365 0.91588 0.98021 1.07373 1.20198 0.97771 0.91184 0.96906 1.20813 0.88822 1.03836 1.03546 1.18468 0.90195 0.84982 1.07203 1.86055 1.78174 1.31980 1.29305 1.22737 0.99739 0.92308 0.84550 1.19186 0.94034 0.87963 0.98782 0.85476 1.29390 0.92703 0.92698 0.91305 1.80998 1.12686 1.11779 1.12390 1.18965 0.96019 0.95723 0.89014 1.21508 1.34089 1.09135 0.92877 0.92653 1.25689 0.97254 1.00618 0.95041 1.70031 1.46725 1.40874 0.98527 0.85628 0.78804 0.79731 0.78318 1.19422 1.19747 1.21128 1.20159 0.93240 0.95943 0.97629 1.20703 0.99467 0.94030 1.02627 1.21140 1.01015 0.90555 1.09553 0.86070 0.91849 0.91898 0.83332 0.89966 0.89500 0.91184 0.89147 0.92833 0.94004 0.97626 0.92627 0.90977 0.89563 0.92873 0.83150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.34 10.50 -93.31 -0.98 -7.31 16 3 C 0.12 2.69 6.69 22.49 0.15 2.84 16 4 C -0.15 -3.39 9.64 22.36 0.22 -3.18 16 5 C -0.06 -1.44 5.89 -19.78 -0.12 -1.55 16 6 C -0.11 -2.26 9.79 71.24 0.70 -1.57 16 7 C 0.03 0.97 5.67 22.49 0.13 1.10 16 8 O -0.34 -10.33 8.05 -93.31 -0.75 -11.08 16 9 C 0.08 2.51 5.04 71.98 0.36 2.87 16 10 C 0.02 0.80 2.45 -12.60 -0.03 0.77 16 11 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 12 C 0.26 10.65 13.71 89.44 1.23 11.88 16 13 N -0.50 -22.55 18.54 20.01 0.37 -22.17 16 14 C 0.04 1.87 4.42 29.85 0.13 2.00 16 15 C -0.54 -28.17 8.60 25.60 0.22 -27.95 16 16 H 0.06 2.88 7.59 -2.92 -0.02 2.86 16 17 C 0.01 0.71 5.46 84.65 0.46 1.17 16 18 N -0.92 -52.16 13.29 21.45 0.28 -51.87 16 19 Si 0.95 43.06 29.54 68.60 2.03 45.08 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 23 C -0.07 -1.77 5.89 -19.78 -0.12 -1.89 16 24 C -0.11 -2.78 9.79 71.24 0.70 -2.08 16 25 C -0.20 -4.39 8.69 22.36 0.19 -4.20 16 26 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 28 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 29 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.36 8.09 -2.39 -0.02 1.34 16 32 H 0.07 1.51 6.31 -2.39 -0.02 1.49 16 33 H 0.09 2.44 7.25 -2.39 -0.02 2.42 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 38 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 40 H 0.05 1.58 7.53 -2.39 -0.02 1.57 16 41 H 0.15 2.43 6.29 -2.91 -0.02 2.42 16 Total: -1.00 -64.78 352.58 7.31 -57.47 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.02 Total: 8.37 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 5.33 Total: -18.49 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: 0.66 Total: -74.05 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -1.73 Total: -18.39 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -64.78 7.31 -57.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424137067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.973 kcal (2) G-P(sol) polarization free energy of solvation -64.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds