Wall clock time and date at job start Tue Mar 31 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38167 * 120.02434 * 2 1 4 4 C 1.38244 * 120.05544 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10878 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.97091 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46534 * 90.00565 * 6 5 4 8 8 O 1.21273 * 120.00243 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99615 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99770 * 180.27729 * 9 7 6 11 11 C 1.52999 * 109.47238 * 178.20095 * 10 9 7 12 12 C 1.50706 * 115.55242 * 65.12157 * 11 10 9 13 13 H 1.08004 * 119.99710 * 265.41242 * 12 11 10 14 14 C 1.37870 * 119.99833 * 85.41175 * 12 11 10 15 15 N 1.31511 * 120.00288 * 353.55860 * 14 12 11 16 16 Si 1.86798 * 120.00127 * 173.55930 * 14 12 11 17 17 H 1.48502 * 109.46883 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47175 * 119.99719 * 16 14 12 19 19 H 1.48501 * 109.47364 * 240.00200 * 16 14 12 20 20 C 1.53005 * 117.49736 * 279.45750 * 11 10 9 21 21 C 1.53001 * 117.50051 * 210.79740 * 11 10 9 22 22 C 1.38124 * 120.05801 * 0.23776 * 5 4 3 23 23 C 1.38703 * 120.02896 * 180.02562 * 2 1 3 24 24 O 1.35899 * 120.05767 * 0.02562 * 23 2 1 25 25 H 1.09007 * 109.47058 * 90.00026 * 1 2 3 26 26 H 1.08998 * 109.47276 * 210.00071 * 1 2 3 27 27 H 1.08998 * 109.47383 * 330.00083 * 1 2 3 28 28 H 1.07997 * 119.97529 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.94669 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47277 * 330.00832 * 6 5 4 31 31 H 1.08993 * 109.47093 * 210.00169 * 6 5 4 32 32 H 0.96997 * 120.00077 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46765 * 298.19560 * 10 9 7 34 34 H 1.09000 * 109.47508 * 58.19946 * 10 9 7 35 35 H 0.97003 * 120.00760 * 185.05299 * 15 14 12 36 36 H 1.08996 * 117.49566 * 359.97438 * 20 11 10 37 37 H 1.08996 * 117.50086 * 145.02353 * 20 11 10 38 38 H 1.09001 * 117.49885 * 214.98054 * 21 11 10 39 39 H 1.08999 * 117.49630 * 359.96996 * 21 11 10 40 40 H 1.07998 * 120.02847 * 179.71762 * 22 5 4 41 41 H 0.96705 * 113.99684 * 90.00218 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1970 -0.0005 5 6 4.2752 0.0011 -0.0005 6 6 5.7822 0.0055 -0.0017 7 6 6.2855 0.0075 1.4188 8 8 5.4981 0.0050 2.3412 9 7 7.6108 0.0120 1.6641 10 6 8.1001 0.0078 3.0450 11 6 9.6296 -0.0310 3.0440 12 6 10.3102 1.1822 2.4642 13 1 10.6102 1.1889 1.4267 14 6 10.5499 2.2835 3.2583 15 7 10.0739 2.3269 4.4835 16 14 11.5508 3.7140 2.5941 17 1 11.9675 3.4210 1.1992 18 1 10.7247 4.9478 2.6144 19 1 12.7552 3.9106 3.4401 20 6 10.3017 -1.3885 2.8284 21 6 10.3192 -0.7366 4.2134 22 6 3.5887 -1.1975 -0.0050 23 6 2.2011 -1.2009 -0.0005 24 8 1.5234 -2.3788 -0.0016 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6583 2.1315 0.0004 29 1 4.1194 2.1331 -0.0010 30 1 6.1425 0.8964 -0.5161 31 1 6.1477 -0.8836 -0.5154 32 1 8.2405 0.0136 0.9264 33 1 7.7599 0.9098 3.5537 34 1 7.7147 -0.8696 3.5644 35 1 10.1792 3.1304 5.0167 36 1 9.6542 -2.2539 2.6878 37 1 11.2363 -1.4041 2.2678 38 1 11.2653 -0.3235 4.5632 39 1 9.6832 -1.1728 4.9837 40 1 4.1314 -2.1312 -0.0096 41 1 1.3276 -2.7191 -0.8854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435958590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:24 Heat of formation + Delta-G solvation = -45.308803 kcal Electronic energy + Delta-G solvation = -22181.814740 eV Core-core repulsion = 18834.005520 eV Total energy + Delta-G solvation = -3347.809219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11810 -38.91243 -36.94994 -36.49330 -33.53701 -33.25318 -31.99323 -29.94499 -29.79499 -26.59700 -25.51409 -24.46471 -22.72770 -21.30564 -21.07985 -19.75006 -19.30385 -17.94330 -16.73374 -16.19452 -16.03723 -15.81666 -15.23078 -14.81471 -14.70043 -14.51265 -13.95353 -13.77878 -13.40191 -13.15095 -12.82058 -12.65928 -12.57035 -12.34568 -11.88043 -11.68567 -11.60468 -11.44642 -11.25491 -11.04291 -10.92697 -10.54430 -10.49084 -10.28738 -9.67296 -9.34164 -8.98059 -8.75334 -8.52629 -8.43038 -8.26202 -8.07564 -6.09936 -4.18948 1.23537 1.33916 3.22325 3.23106 3.32220 3.33927 3.51612 3.98220 4.19109 4.33462 4.69074 4.79321 4.93225 5.12522 5.17904 5.25119 5.33381 5.41543 5.48548 5.51728 5.57077 5.63271 5.73891 5.95454 6.01956 6.09283 6.32040 6.33266 6.45859 6.47654 6.56043 6.59790 6.67642 6.81366 6.89012 7.08097 7.28750 7.42175 7.47274 7.58908 7.79219 8.30350 8.32043 8.81905 8.90588 9.48103 10.97886 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.003341 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.229947 B = 8378.189138 C = 9015.611345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.118 4.118 3 C -0.105 4.105 4 C -0.108 4.108 5 C -0.045 4.045 6 C -0.106 4.106 7 C 0.504 3.496 8 O -0.548 6.548 9 N -0.704 5.704 10 C 0.164 3.836 11 C 0.028 3.972 12 C -0.501 4.501 13 H 0.061 0.939 14 C 0.074 3.926 15 N -0.874 5.874 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.211 4.211 21 C -0.149 4.149 22 C -0.127 4.127 23 C 0.100 3.900 24 O -0.496 6.496 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.361 -4.920 -12.610 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.118 4.118 3 C -0.124 4.124 4 C -0.126 4.126 5 C -0.045 4.045 6 C -0.146 4.146 7 C 0.289 3.711 8 O -0.427 6.427 9 N -0.353 5.353 10 C 0.041 3.959 11 C 0.027 3.973 12 C -0.538 4.538 13 H 0.079 0.921 14 C -0.131 4.131 15 N -0.510 5.510 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.248 4.248 21 C -0.187 4.187 22 C -0.145 4.145 23 C 0.056 3.944 24 O -0.305 6.305 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -13.826 -4.767 -11.108 18.365 hybrid contribution 0.949 0.802 -0.954 1.566 sum -12.877 -3.965 -12.063 18.085 Atomic orbital electron populations 1.20658 0.90965 1.03102 1.01898 1.20156 0.96505 0.92670 1.02489 1.20870 0.94001 0.97075 1.00406 1.21037 0.94113 0.97742 0.99756 1.19189 0.94126 0.92858 0.98342 1.20721 0.92466 1.05154 0.96239 1.20324 0.82923 0.77394 0.90491 1.90694 1.55510 1.50322 1.46129 1.45974 1.05803 1.72962 1.10565 1.20980 0.94516 1.00085 0.80353 1.19042 0.89062 0.90274 0.98914 1.20380 1.38806 0.98319 0.96343 0.92117 1.24993 0.95199 0.98304 0.94576 1.69985 1.44404 1.27808 1.08761 0.86578 0.80230 0.82334 0.79095 1.19698 1.21034 1.20944 1.23024 1.02563 0.97398 1.01815 1.22494 1.02466 1.03652 0.90055 1.21212 0.93334 0.98268 1.01725 1.18183 0.89594 0.84693 1.01928 1.84833 1.76491 1.36177 1.33024 0.91624 0.91046 0.91597 0.85756 0.85758 0.87907 0.88261 0.76630 0.91014 0.94583 0.92870 0.91669 0.90346 0.89821 0.91686 0.85642 0.76099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.79 36.01 0.35 -0.65 16 2 C -0.12 -1.42 5.89 -104.48 -0.62 -2.03 16 3 C -0.11 -1.27 9.70 -39.61 -0.38 -1.66 16 4 C -0.11 -1.44 9.70 -39.56 -0.38 -1.82 16 5 C -0.04 -0.62 4.37 -104.64 -0.46 -1.08 16 6 C -0.11 -1.39 5.83 -29.03 -0.17 -1.56 16 7 C 0.50 9.26 7.82 -10.98 -0.09 9.17 16 8 O -0.55 -12.44 16.03 5.56 0.09 -12.35 16 9 N -0.70 -13.39 5.47 -60.29 -0.33 -13.72 16 10 C 0.16 3.72 5.50 -4.04 -0.02 3.70 16 11 C 0.03 0.65 1.38 -155.65 -0.21 0.43 16 12 C -0.50 -12.73 8.63 -34.44 -0.30 -13.02 16 13 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 14 C 0.07 1.93 5.39 -17.82 -0.10 1.84 16 15 N -0.87 -24.19 12.91 55.43 0.72 -23.47 16 16 Si 0.89 20.34 29.55 -169.99 -5.02 15.32 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.21 -4.34 9.96 -26.69 -0.27 -4.60 16 21 C -0.15 -3.39 9.42 -26.69 -0.25 -3.64 16 22 C -0.13 -1.72 9.64 -39.43 -0.38 -2.10 16 23 C 0.10 1.29 6.68 -39.22 -0.26 1.02 16 24 O -0.50 -5.47 12.55 -19.42 -0.24 -5.72 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.68 7.53 -51.93 -0.39 0.29 16 27 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.40 6.78 8.37 -40.82 -0.34 6.44 16 33 H 0.07 1.89 8.14 -51.93 -0.42 1.46 16 34 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 38 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.38 2.22 9.06 45.56 0.41 2.63 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -32.16 354.01 -8.34 -40.50 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.35 Total: 10.11 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -3.53 Total: -16.01 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.39 Total: -37.19 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.15 Total: -18.07 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.16 -8.34 -40.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.810 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds