Wall clock time and date at job start Tue Mar 31 2020 06:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38167 * 120.02434 * 2 1 4 4 C 1.38244 * 120.05544 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10878 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.97091 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46534 * 90.00565 * 6 5 4 8 8 O 1.21273 * 120.00243 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99615 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99770 * 180.27729 * 9 7 6 11 11 C 1.52999 * 109.47238 * 178.20095 * 10 9 7 12 12 C 1.50706 * 115.55242 * 65.12157 * 11 10 9 13 13 H 1.08004 * 119.99710 * 265.41242 * 12 11 10 14 14 C 1.37870 * 119.99833 * 85.41175 * 12 11 10 15 15 N 1.31511 * 120.00288 * 353.55860 * 14 12 11 16 16 Si 1.86798 * 120.00127 * 173.55930 * 14 12 11 17 17 H 1.48502 * 109.46883 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47175 * 119.99719 * 16 14 12 19 19 H 1.48501 * 109.47364 * 240.00200 * 16 14 12 20 20 C 1.53005 * 117.49736 * 279.45750 * 11 10 9 21 21 C 1.53001 * 117.50051 * 210.79740 * 11 10 9 22 22 C 1.38124 * 120.05801 * 0.23776 * 5 4 3 23 23 C 1.38703 * 120.02896 * 180.02562 * 2 1 3 24 24 O 1.35899 * 120.05767 * 0.02562 * 23 2 1 25 25 H 1.09007 * 109.47058 * 90.00026 * 1 2 3 26 26 H 1.08998 * 109.47276 * 210.00071 * 1 2 3 27 27 H 1.08998 * 109.47383 * 330.00083 * 1 2 3 28 28 H 1.07997 * 119.97529 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.94669 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47277 * 330.00832 * 6 5 4 31 31 H 1.08993 * 109.47093 * 210.00169 * 6 5 4 32 32 H 0.96997 * 120.00077 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46765 * 298.19560 * 10 9 7 34 34 H 1.09000 * 109.47508 * 58.19946 * 10 9 7 35 35 H 0.97003 * 120.00760 * 185.05299 * 15 14 12 36 36 H 1.08996 * 117.49566 * 359.97438 * 20 11 10 37 37 H 1.08996 * 117.50086 * 145.02353 * 20 11 10 38 38 H 1.09001 * 117.49885 * 214.98054 * 21 11 10 39 39 H 1.08999 * 117.49630 * 359.96996 * 21 11 10 40 40 H 1.07998 * 120.02847 * 179.71762 * 22 5 4 41 41 H 0.96705 * 113.99684 * 90.00218 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1970 -0.0005 5 6 4.2752 0.0011 -0.0005 6 6 5.7822 0.0055 -0.0017 7 6 6.2855 0.0075 1.4188 8 8 5.4981 0.0050 2.3412 9 7 7.6108 0.0120 1.6641 10 6 8.1001 0.0078 3.0450 11 6 9.6296 -0.0310 3.0440 12 6 10.3102 1.1822 2.4642 13 1 10.6102 1.1889 1.4267 14 6 10.5499 2.2835 3.2583 15 7 10.0739 2.3269 4.4835 16 14 11.5508 3.7140 2.5941 17 1 11.9675 3.4210 1.1992 18 1 10.7247 4.9478 2.6144 19 1 12.7552 3.9106 3.4401 20 6 10.3017 -1.3885 2.8284 21 6 10.3192 -0.7366 4.2134 22 6 3.5887 -1.1975 -0.0050 23 6 2.2011 -1.2009 -0.0005 24 8 1.5234 -2.3788 -0.0016 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6583 2.1315 0.0004 29 1 4.1194 2.1331 -0.0010 30 1 6.1425 0.8964 -0.5161 31 1 6.1477 -0.8836 -0.5154 32 1 8.2405 0.0136 0.9264 33 1 7.7599 0.9098 3.5537 34 1 7.7147 -0.8696 3.5644 35 1 10.1792 3.1304 5.0167 36 1 9.6542 -2.2539 2.6878 37 1 11.2363 -1.4041 2.2678 38 1 11.2653 -0.3235 4.5632 39 1 9.6832 -1.1728 4.9837 40 1 4.1314 -2.1312 -0.0096 41 1 1.3276 -2.7191 -0.8854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435958590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:23 Heat of formation + Delta-G solvation = -66.399171 kcal Electronic energy + Delta-G solvation = -22182.729287 eV Core-core repulsion = 18834.005520 eV Total energy + Delta-G solvation = -3348.723766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17469 -40.28301 -38.51471 -37.61357 -34.90776 -34.49320 -33.96391 -30.86912 -30.84009 -28.16667 -27.25776 -25.72597 -23.65803 -22.98925 -22.16811 -21.34948 -20.96107 -18.90833 -18.32534 -17.69600 -17.16256 -16.94197 -16.63481 -16.34974 -16.06731 -15.96186 -15.43885 -14.93127 -14.71610 -14.30358 -14.13151 -13.87553 -13.80316 -13.48460 -13.29485 -13.10161 -12.92902 -12.83967 -12.63421 -12.50651 -12.31399 -12.19449 -12.04992 -11.48995 -11.36797 -10.92718 -10.84674 -10.46733 -10.06097 -9.81356 -9.69710 -9.34055 -8.09539 -6.23097 0.28847 0.39092 1.41863 1.45715 1.55027 1.77989 2.35203 2.43575 2.80206 3.18962 3.29600 3.50883 3.71481 3.90479 4.05318 4.14418 4.25643 4.28003 4.41864 4.54666 4.57216 4.64546 4.66116 4.73226 4.78749 4.81099 4.90523 4.99126 5.05041 5.08894 5.26386 5.28479 5.39068 5.57249 5.58351 5.60672 5.62810 5.69825 5.78800 5.95925 6.36812 6.80494 6.86289 6.88961 7.44116 7.47129 8.98230 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.003341 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.229947 B = 8378.189138 C = 9015.611345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.126 4.126 5 C -0.063 4.063 6 C -0.093 4.093 7 C 0.502 3.498 8 O -0.596 6.596 9 N -0.699 5.699 10 C 0.180 3.820 11 C 0.007 3.993 12 C -0.503 4.503 13 H 0.067 0.933 14 C 0.023 3.977 15 N -0.910 5.910 16 Si 0.951 3.049 17 H -0.259 1.259 18 H -0.288 1.288 19 H -0.287 1.287 20 C -0.175 4.175 21 C -0.163 4.163 22 C -0.144 4.144 23 C 0.092 3.908 24 O -0.505 6.505 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.412 0.588 33 H 0.026 0.974 34 H 0.030 0.970 35 H 0.258 0.742 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.130 0.870 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 -5.321 -15.000 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.126 4.126 3 C -0.129 4.129 4 C -0.144 4.144 5 C -0.064 4.064 6 C -0.132 4.132 7 C 0.290 3.710 8 O -0.477 6.477 9 N -0.349 5.349 10 C 0.055 3.945 11 C 0.006 3.994 12 C -0.541 4.541 13 H 0.085 0.915 14 C -0.178 4.178 15 N -0.547 5.547 16 Si 0.777 3.223 17 H -0.182 1.182 18 H -0.214 1.214 19 H -0.213 1.213 20 C -0.212 4.212 21 C -0.201 4.201 22 C -0.162 4.162 23 C 0.048 3.952 24 O -0.318 6.318 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.164 0.836 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.248 0.752 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.148 0.852 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -14.179 -5.188 -13.562 20.296 hybrid contribution 0.982 0.864 -0.211 1.325 sum -13.198 -4.324 -13.774 19.560 Atomic orbital electron populations 1.20691 0.88985 1.03268 1.03322 1.20524 0.98088 0.92385 1.01639 1.21182 0.93827 0.98170 0.99751 1.21279 0.94955 0.97945 1.00216 1.19337 0.94480 0.93262 0.99326 1.20722 0.92191 1.07824 0.92482 1.21249 0.81973 0.75484 0.92331 1.90671 1.56523 1.52248 1.48279 1.45859 1.06627 1.73067 1.09336 1.20508 0.94257 0.97543 0.82144 1.19064 0.89147 0.91379 0.99788 1.20714 1.37947 0.98863 0.96557 0.91466 1.25733 0.96246 1.00942 0.94847 1.70120 1.46170 1.28338 1.10101 0.85615 0.78439 0.79232 0.78988 1.18231 1.21394 1.21311 1.23012 1.02587 0.96330 0.99239 1.22435 1.01668 1.04819 0.91215 1.21399 0.94006 0.98468 1.02336 1.18347 0.89635 0.85535 1.01689 1.84769 1.76182 1.35645 1.35155 0.89486 0.91505 0.90768 0.83625 0.85168 0.85471 0.85116 0.75175 0.95562 0.95147 0.93292 0.89358 0.89336 0.91821 0.91431 0.85196 0.73492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.79 71.24 0.70 -1.03 16 2 C -0.13 -2.84 5.89 -19.77 -0.12 -2.96 16 3 C -0.11 -2.54 9.70 22.25 0.22 -2.32 16 4 C -0.13 -3.22 9.70 22.28 0.22 -3.01 16 5 C -0.06 -1.69 4.37 -19.88 -0.09 -1.78 16 6 C -0.09 -2.26 5.83 29.10 0.17 -2.09 16 7 C 0.50 18.15 7.82 87.66 0.69 18.84 16 8 O -0.60 -27.47 16.03 -3.01 -0.05 -27.52 16 9 N -0.70 -26.08 5.47 -463.06 -2.54 -28.62 16 10 C 0.18 8.30 5.50 86.38 0.48 8.78 16 11 C 0.01 0.32 1.38 -52.92 -0.07 0.25 16 12 C -0.50 -25.27 8.63 25.60 0.22 -25.05 16 13 H 0.07 3.22 7.82 -2.91 -0.02 3.20 16 14 C 0.02 1.20 5.39 84.65 0.46 1.66 16 15 N -0.91 -51.57 12.91 21.44 0.28 -51.30 16 16 Si 0.95 41.71 29.55 68.60 2.03 43.73 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 20 C -0.17 -6.84 9.96 30.62 0.30 -6.54 16 21 C -0.16 -7.47 9.42 30.62 0.29 -7.18 16 22 C -0.14 -3.76 9.64 22.37 0.22 -3.54 16 23 C 0.09 2.26 6.68 22.51 0.15 2.41 16 24 O -0.50 -10.41 12.55 -92.41 -1.16 -11.57 16 25 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.07 1.15 7.53 -2.39 -0.02 1.13 16 27 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 28 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.13 2.48 8.08 -2.39 -0.02 2.47 16 31 H 0.13 2.36 8.08 -2.39 -0.02 2.34 16 32 H 0.41 13.23 8.37 -92.71 -0.78 12.45 16 33 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 35 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 36 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.41 3.94 9.06 -74.05 -0.67 3.27 16 Total: -1.00 -70.49 354.01 1.98 -68.51 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -0.40 Total: 30.31 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 3.82 Total: -23.55 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -2.26 Total: -79.92 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.21 Total: -39.09 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -70.49 1.98 -68.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.114 kcal (2) G-P(sol) polarization free energy of solvation -70.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds