Wall clock time and date at job start Tue Mar 31 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99422 * 2 1 4 4 N 1.46505 * 109.46675 * 125.00719 * 3 2 1 5 5 C 1.46496 * 119.99595 * 274.96342 * 4 3 2 6 6 C 1.50710 * 109.47110 * 270.00167 * 5 4 3 7 7 H 1.07995 * 119.99715 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99777 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00179 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99750 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47258 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47033 * 119.99844 * 10 8 6 13 13 H 1.48492 * 109.47038 * 239.99959 * 10 8 6 14 14 C 1.34770 * 120.00088 * 94.96849 * 4 3 2 15 15 O 1.21588 * 119.99849 * 185.55461 * 14 4 3 16 16 C 1.47539 * 120.00114 * 5.55015 * 14 4 3 17 17 C 1.39709 * 120.19096 * 55.03841 * 16 14 4 18 18 C 1.37789 * 119.91110 * 180.02562 * 17 16 14 19 19 C 1.38546 * 120.29865 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.80550 * 179.97438 * 19 18 17 21 21 C 1.38060 * 120.38677 * 0.27084 * 19 18 17 22 22 C 1.50710 * 119.95516 * 179.72502 * 21 19 18 23 23 C 1.38700 * 120.08825 * 359.45729 * 21 19 18 24 24 O 1.35659 * 120.15523 * 180.26975 * 23 21 19 25 25 H 1.08003 * 119.99854 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00153 * 359.97438 * 1 2 3 27 27 H 1.07992 * 119.99977 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47616 * 5.00700 * 3 2 1 29 29 H 1.08999 * 109.47058 * 245.00223 * 3 2 1 30 30 H 1.08995 * 109.47717 * 30.00189 * 5 4 3 31 31 H 1.09001 * 109.46992 * 150.00591 * 5 4 3 32 32 H 0.97006 * 119.99904 * 180.02562 * 9 8 6 33 33 H 1.07999 * 120.04330 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.85204 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.46885 * 90.00502 * 20 19 18 36 36 H 1.08992 * 109.46854 * 329.99930 * 20 19 18 37 37 H 1.08996 * 109.46738 * 209.99891 * 20 19 18 38 38 H 1.08996 * 109.46584 * 90.00321 * 22 21 19 39 39 H 1.08997 * 109.47012 * 210.00288 * 22 21 19 40 40 H 1.08995 * 109.46974 * 330.00110 * 22 21 19 41 41 H 0.96702 * 113.99986 * 270.26979 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5287 1.7627 2.4521 6 6 2.7147 3.2520 2.5891 7 1 3.1368 3.8206 1.7737 8 6 2.3461 3.8884 3.7553 9 7 1.8317 3.1959 4.7480 10 14 2.5761 5.7344 3.9249 11 1 3.1693 6.2761 2.6759 12 1 1.2595 6.3770 4.1673 13 1 3.4828 6.0175 5.0663 14 6 4.2775 0.9603 0.9572 15 8 5.0239 0.8854 1.9140 16 6 4.7770 0.6443 -0.3946 17 6 4.6462 1.5759 -1.4276 18 6 5.1143 1.2746 -2.6880 19 6 5.7153 0.0512 -2.9364 20 6 6.2228 -0.2670 -4.3193 21 6 5.8464 -0.8805 -1.9260 22 6 6.4962 -2.2106 -2.2086 23 6 5.3860 -0.5918 -0.6499 24 8 5.5191 -1.5041 0.3452 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0897 29 1 2.6211 1.4028 -0.9314 30 1 1.4727 1.5168 2.5635 31 1 3.1041 1.2521 3.2243 32 1 1.5720 3.6437 5.5684 33 1 4.1780 2.5306 -1.2386 34 1 5.0130 1.9955 -3.4856 35 1 7.2599 0.0561 -4.4089 36 1 5.6145 0.2543 -5.0583 37 1 6.1610 -1.3416 -4.4906 38 1 7.5690 -2.1358 -2.0310 39 1 6.0712 -2.9694 -1.5517 40 1 6.3183 -2.4884 -3.2474 41 1 4.7714 -2.1122 0.4239 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436839219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:16 Heat of formation + Delta-G solvation = -32.011828 kcal Electronic energy + Delta-G solvation = -23242.610756 eV Core-core repulsion = 19895.378136 eV Total energy + Delta-G solvation = -3347.232619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.39843 -38.44639 -36.88341 -35.57320 -33.54789 -33.10421 -31.98549 -31.04016 -28.24946 -27.40463 -26.40955 -25.39733 -23.22103 -21.90437 -21.35341 -19.87240 -18.81078 -17.78425 -16.57234 -16.51678 -16.21060 -15.79769 -15.14412 -14.60675 -14.48240 -14.29042 -14.14471 -13.73900 -13.37187 -13.06955 -12.88305 -12.71403 -12.68989 -12.31130 -12.11309 -11.78056 -11.60990 -11.56825 -11.33332 -11.16045 -11.05305 -10.86466 -10.60819 -10.47003 -10.18866 -9.62471 -9.18538 -8.99244 -8.52093 -8.48435 -8.40580 -7.66516 -6.03812 -4.08821 1.08476 1.27103 2.47041 3.26979 3.30005 3.37921 3.41794 3.72377 3.99486 4.21981 4.44986 4.71239 4.79604 4.94123 5.02901 5.14389 5.24320 5.30502 5.35249 5.41393 5.49279 5.51299 5.57983 5.68530 5.69375 5.73190 5.89660 6.03285 6.10633 6.20258 6.31579 6.38471 6.51305 6.79152 6.80713 6.93407 7.11075 7.46757 7.55603 7.75186 7.92924 8.23556 8.39628 8.89723 9.08101 9.56313 11.04266 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018908 B = 0.004629 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.468820 B = 6046.752412 C = 6291.099100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.126 3.874 4 N -0.588 5.588 5 C 0.247 3.753 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.551 3.449 15 O -0.521 6.521 16 C -0.137 4.137 17 C -0.078 4.078 18 C -0.130 4.130 19 C -0.066 4.066 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.107 4.107 23 C 0.148 3.852 24 O -0.480 6.480 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 -9.292 -19.005 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.182 4.182 3 C 0.003 3.997 4 N -0.319 5.319 5 C 0.128 3.872 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.336 3.664 15 O -0.397 6.397 16 C -0.141 4.141 17 C -0.097 4.097 18 C -0.148 4.148 19 C -0.067 4.067 20 C -0.173 4.173 21 C -0.121 4.121 22 C -0.164 4.164 23 C 0.102 3.898 24 O -0.289 6.289 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.322 -9.020 -18.159 20.546 hybrid contribution -0.477 0.875 0.249 1.027 sum 2.845 -8.145 -17.910 19.880 Atomic orbital electron populations 1.23799 0.95786 1.01731 1.00842 1.23348 0.96286 0.98883 0.99669 1.20806 0.93175 0.95318 0.90416 1.48163 1.07801 1.63802 1.12129 1.19300 0.95237 0.94948 0.77728 1.21473 1.41809 0.92681 1.00687 0.92410 1.24929 0.95046 0.98569 0.95480 1.69947 1.42430 1.35725 1.05102 0.86452 0.77719 0.85099 0.78215 1.19789 1.20947 1.20854 1.17987 0.82721 0.78233 0.87416 1.90789 1.55838 1.51813 1.41245 1.20618 1.01964 0.96094 0.95434 1.21184 0.97948 0.98930 0.91640 1.20917 1.00334 0.96637 0.96946 1.19696 0.97994 0.93539 0.95442 1.20876 1.01317 1.02405 0.92695 1.19937 1.02494 0.97667 0.91973 1.20691 1.00554 0.93298 1.01834 1.18191 0.96194 0.88873 0.86563 1.84843 1.45969 1.46256 1.51868 0.88823 0.88261 0.88206 0.89654 0.89878 0.94832 0.93728 0.92761 0.84809 0.85462 0.90985 0.91420 0.91081 0.91082 0.91522 0.91308 0.75802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 14.32 29.01 0.42 -2.04 16 2 C -0.16 -2.42 9.84 -36.03 -0.35 -2.77 16 3 C 0.13 2.14 5.67 -5.19 -0.03 2.11 16 4 N -0.59 -12.80 2.44 -177.66 -0.43 -13.24 16 5 C 0.25 6.57 5.22 -5.19 -0.03 6.54 16 6 C -0.53 -15.07 9.39 -34.43 -0.32 -15.40 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 10 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.55 12.29 6.78 -12.47 -0.08 12.21 16 15 O -0.52 -14.16 16.35 3.10 0.05 -14.11 16 16 C -0.14 -2.42 4.91 -104.84 -0.51 -2.93 16 17 C -0.08 -1.16 7.48 -39.20 -0.29 -1.45 16 18 C -0.13 -1.54 9.67 -39.63 -0.38 -1.93 16 19 C -0.07 -0.75 5.88 -104.57 -0.62 -1.36 16 20 C -0.12 -0.90 9.60 36.01 0.35 -0.56 16 21 C -0.12 -1.51 5.89 -104.51 -0.62 -2.13 16 22 C -0.11 -1.03 9.37 36.01 0.34 -0.70 16 23 C 0.15 2.32 6.68 -38.70 -0.26 2.06 16 24 O -0.48 -7.57 11.78 -20.86 -0.25 -7.82 16 25 H 0.09 1.07 8.06 -52.48 -0.42 0.65 16 26 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 27 H 0.10 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.09 1.47 7.76 -51.93 -0.40 1.07 16 29 H 0.08 1.23 4.42 -51.93 -0.23 1.00 16 30 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.04 1.35 7.35 -51.93 -0.38 0.97 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.13 1.94 7.57 -52.49 -0.40 1.54 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 37 H 0.07 0.47 5.91 -51.93 -0.31 0.16 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.61 7.54 -51.93 -0.39 0.22 16 40 H 0.07 0.51 5.92 -51.93 -0.31 0.20 16 41 H 0.39 4.33 9.06 45.56 0.41 4.74 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -35.32 346.96 -7.10 -42.41 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.91 Total: 3.25 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.50 Total: -6.66 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.30 Total: -39.26 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.20 Total: -21.93 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.32 -7.10 -42.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436839219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.402 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds