Wall clock time and date at job start Tue Mar 31 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99422 * 2 1 4 4 N 1.46505 * 109.46675 * 125.00719 * 3 2 1 5 5 C 1.46496 * 119.99595 * 274.96342 * 4 3 2 6 6 C 1.50710 * 109.47110 * 270.00167 * 5 4 3 7 7 H 1.07995 * 119.99715 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99777 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00179 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99750 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47258 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47033 * 119.99844 * 10 8 6 13 13 H 1.48492 * 109.47038 * 239.99959 * 10 8 6 14 14 C 1.34770 * 120.00088 * 94.96849 * 4 3 2 15 15 O 1.21588 * 119.99849 * 185.55461 * 14 4 3 16 16 C 1.47539 * 120.00114 * 5.55015 * 14 4 3 17 17 C 1.39709 * 120.19096 * 55.03841 * 16 14 4 18 18 C 1.37789 * 119.91110 * 180.02562 * 17 16 14 19 19 C 1.38546 * 120.29865 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.80550 * 179.97438 * 19 18 17 21 21 C 1.38060 * 120.38677 * 0.27084 * 19 18 17 22 22 C 1.50710 * 119.95516 * 179.72502 * 21 19 18 23 23 C 1.38700 * 120.08825 * 359.45729 * 21 19 18 24 24 O 1.35659 * 120.15523 * 180.26975 * 23 21 19 25 25 H 1.08003 * 119.99854 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00153 * 359.97438 * 1 2 3 27 27 H 1.07992 * 119.99977 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47616 * 5.00700 * 3 2 1 29 29 H 1.08999 * 109.47058 * 245.00223 * 3 2 1 30 30 H 1.08995 * 109.47717 * 30.00189 * 5 4 3 31 31 H 1.09001 * 109.46992 * 150.00591 * 5 4 3 32 32 H 0.97006 * 119.99904 * 180.02562 * 9 8 6 33 33 H 1.07999 * 120.04330 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.85204 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.46885 * 90.00502 * 20 19 18 36 36 H 1.08992 * 109.46854 * 329.99930 * 20 19 18 37 37 H 1.08996 * 109.46738 * 209.99891 * 20 19 18 38 38 H 1.08996 * 109.46584 * 90.00321 * 22 21 19 39 39 H 1.08997 * 109.47012 * 210.00288 * 22 21 19 40 40 H 1.08995 * 109.46974 * 330.00110 * 22 21 19 41 41 H 0.96702 * 113.99986 * 270.26979 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5287 1.7627 2.4521 6 6 2.7147 3.2520 2.5891 7 1 3.1368 3.8206 1.7737 8 6 2.3461 3.8884 3.7553 9 7 1.8317 3.1959 4.7480 10 14 2.5761 5.7344 3.9249 11 1 3.1693 6.2761 2.6759 12 1 1.2595 6.3770 4.1673 13 1 3.4828 6.0175 5.0663 14 6 4.2775 0.9603 0.9572 15 8 5.0239 0.8854 1.9140 16 6 4.7770 0.6443 -0.3946 17 6 4.6462 1.5759 -1.4276 18 6 5.1143 1.2746 -2.6880 19 6 5.7153 0.0512 -2.9364 20 6 6.2228 -0.2670 -4.3193 21 6 5.8464 -0.8805 -1.9260 22 6 6.4962 -2.2106 -2.2086 23 6 5.3860 -0.5918 -0.6499 24 8 5.5191 -1.5041 0.3452 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0897 29 1 2.6211 1.4028 -0.9314 30 1 1.4727 1.5168 2.5635 31 1 3.1041 1.2521 3.2243 32 1 1.5720 3.6437 5.5684 33 1 4.1780 2.5306 -1.2386 34 1 5.0130 1.9955 -3.4856 35 1 7.2599 0.0561 -4.4089 36 1 5.6145 0.2543 -5.0583 37 1 6.1610 -1.3416 -4.4906 38 1 7.5690 -2.1358 -2.0310 39 1 6.0712 -2.9694 -1.5517 40 1 6.3183 -2.4884 -3.2474 41 1 4.7714 -2.1122 0.4239 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436839219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:13 Heat of formation + Delta-G solvation = -55.813701 kcal Electronic energy + Delta-G solvation = -23243.642882 eV Core-core repulsion = 19895.378136 eV Total energy + Delta-G solvation = -3348.264746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.66895 -39.96085 -38.00865 -37.20894 -35.22338 -34.43300 -33.66983 -31.99808 -29.92869 -28.56075 -27.50970 -26.92373 -25.04706 -23.02460 -22.60513 -21.12329 -20.27795 -18.95451 -18.65447 -17.95744 -17.63340 -17.24491 -16.58195 -16.13260 -15.88338 -15.70424 -15.27515 -14.84574 -14.46375 -14.35799 -14.28298 -14.13669 -13.64382 -13.54457 -13.41432 -13.24221 -13.05091 -12.90591 -12.67646 -12.53600 -12.30875 -12.28655 -12.26072 -12.17635 -11.69724 -11.62490 -10.71103 -10.67882 -10.37641 -9.65923 -9.55482 -9.42302 -8.25288 -6.40842 -0.04048 0.24056 1.27430 1.34471 1.37426 1.49178 1.77660 2.29568 2.41706 2.58643 3.04362 3.16473 3.58177 3.81914 3.93848 4.03898 4.16765 4.18810 4.28820 4.39337 4.53502 4.63106 4.76918 4.77702 4.80156 4.91544 4.96294 4.97978 5.01549 5.16513 5.19113 5.30711 5.31101 5.37250 5.47358 5.59088 5.65653 5.72206 5.87913 5.91254 6.02058 6.62426 6.69432 6.72674 7.22255 7.38237 8.82477 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018908 B = 0.004629 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.468820 B = 6046.752412 C = 6291.099100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.184 4.184 3 C 0.126 3.874 4 N -0.589 5.589 5 C 0.264 3.736 6 C -0.546 4.546 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.970 3.030 11 H -0.266 1.266 12 H -0.266 1.266 13 H -0.282 1.282 14 C 0.548 3.452 15 O -0.588 6.588 16 C -0.169 4.169 17 C -0.087 4.087 18 C -0.121 4.121 19 C -0.054 4.054 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.106 4.106 23 C 0.133 3.867 24 O -0.501 6.501 25 H 0.119 0.881 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.024 0.976 31 H -0.005 1.005 32 H 0.268 0.732 33 H 0.130 0.870 34 H 0.163 0.837 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 -9.090 -22.765 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.203 4.203 3 C 0.004 3.996 4 N -0.319 5.319 5 C 0.144 3.856 6 C -0.584 4.584 7 H 0.073 0.927 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.794 3.206 11 H -0.190 1.190 12 H -0.191 1.191 13 H -0.208 1.208 14 C 0.337 3.663 15 O -0.469 6.469 16 C -0.173 4.173 17 C -0.106 4.106 18 C -0.138 4.138 19 C -0.054 4.054 20 C -0.172 4.172 21 C -0.121 4.121 22 C -0.163 4.163 23 C 0.087 3.913 24 O -0.313 6.313 25 H 0.137 0.863 26 H 0.119 0.881 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.042 0.958 31 H 0.013 0.987 32 H 0.077 0.923 33 H 0.148 0.852 34 H 0.181 0.819 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.300 -8.834 -21.975 23.913 hybrid contribution -0.503 0.730 1.345 1.611 sum 2.797 -8.104 -20.630 22.340 Atomic orbital electron populations 1.24050 0.95234 1.03056 0.97939 1.23236 0.96848 0.97986 1.02249 1.21021 0.92595 0.96482 0.89488 1.48123 1.08846 1.63210 1.11677 1.18727 0.93610 0.93926 0.79387 1.21721 1.42135 0.93516 1.01060 0.92743 1.25880 0.94377 1.03858 0.94908 1.70068 1.42989 1.37940 1.05684 0.85337 0.78313 0.78752 0.78224 1.18975 1.19101 1.20794 1.18768 0.82028 0.76600 0.88917 1.90726 1.57421 1.54775 1.43986 1.20315 1.05274 0.98394 0.93299 1.21224 0.98788 0.98257 0.92299 1.21285 0.98770 0.97566 0.96223 1.20226 0.95790 0.92489 0.96932 1.20998 1.02067 1.03863 0.90259 1.20265 1.01727 0.99412 0.90717 1.20777 1.00188 0.91581 1.03705 1.18465 0.96747 0.88298 0.87787 1.84789 1.47036 1.46723 1.52724 0.86302 0.88063 0.87583 0.90304 0.87525 0.95801 0.98709 0.92319 0.85245 0.81929 0.89788 0.89441 0.89482 0.90949 0.91474 0.88343 0.74201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 14.32 67.78 0.97 -3.24 16 2 C -0.18 -5.46 9.84 25.64 0.25 -5.21 16 3 C 0.13 4.36 5.67 85.63 0.49 4.85 16 4 N -0.59 -27.22 2.44 -834.27 -2.04 -29.26 16 5 C 0.26 15.06 5.22 85.64 0.45 15.51 16 6 C -0.55 -32.54 9.39 25.60 0.24 -32.30 16 7 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 8 C 0.01 0.53 5.46 84.66 0.46 0.99 16 9 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 10 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 C 0.55 26.11 6.78 86.70 0.59 26.70 16 15 O -0.59 -34.67 16.35 -1.90 -0.03 -34.70 16 16 C -0.17 -6.13 4.91 -20.01 -0.10 -6.23 16 17 C -0.09 -2.52 7.48 22.52 0.17 -2.35 16 18 C -0.12 -2.49 9.67 22.24 0.22 -2.27 16 19 C -0.05 -1.02 5.88 -19.83 -0.12 -1.14 16 20 C -0.12 -1.18 9.60 71.24 0.68 -0.50 16 21 C -0.12 -2.79 5.89 -19.79 -0.12 -2.91 16 22 C -0.11 -1.74 9.37 71.24 0.67 -1.08 16 23 C 0.13 4.21 6.68 22.84 0.15 4.36 16 24 O -0.50 -16.52 11.78 -87.66 -1.03 -17.55 16 25 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 26 H 0.10 2.54 7.84 -2.91 -0.02 2.52 16 27 H 0.11 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.08 2.79 7.76 -2.39 -0.02 2.77 16 29 H 0.11 3.15 4.42 -2.39 -0.01 3.14 16 30 H 0.02 1.38 8.07 -2.39 -0.02 1.36 16 31 H -0.01 -0.34 7.35 -2.39 -0.02 -0.36 16 32 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 33 H 0.13 3.74 7.57 -2.91 -0.02 3.72 16 34 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 0.62 8.08 -2.39 -0.02 0.60 16 37 H 0.09 0.66 5.91 -2.39 -0.01 0.64 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.10 7.54 -2.39 -0.02 1.08 16 40 H 0.10 1.02 5.92 -2.39 -0.01 1.00 16 41 H 0.40 9.59 9.06 -74.06 -0.67 8.92 16 Total: -1.00 -82.47 346.96 4.58 -77.89 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.37 Total: 17.74 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 5.00 Total: -4.81 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -1.75 Total: -86.35 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -1.06 Total: -52.25 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -82.47 4.58 -77.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436839219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.074 kcal (2) G-P(sol) polarization free energy of solvation -82.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds