Wall clock time and date at job start Tue Mar 31 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38553 * 119.80614 * 2 1 4 4 C 1.37790 * 120.29773 * 179.97438 * 3 2 1 5 5 C 1.39706 * 119.91112 * 0.02582 * 4 3 2 6 6 C 1.47531 * 120.19095 * 180.02562 * 5 4 3 7 7 O 1.21589 * 120.00006 * 175.15992 * 6 5 4 8 8 N 1.34781 * 120.00309 * 355.15801 * 6 5 4 9 9 C 1.46494 * 120.00184 * 185.43289 * 8 6 5 10 10 C 1.53002 * 109.47323 * 184.71526 * 9 8 6 11 11 C 1.50704 * 115.54812 * 305.53144 * 10 9 8 12 12 H 1.08005 * 119.99923 * 145.07868 * 11 10 9 13 13 C 1.37874 * 120.00101 * 325.08627 * 11 10 9 14 14 N 1.31515 * 119.99878 * 1.11919 * 13 11 10 15 15 Si 1.86803 * 120.00322 * 181.12528 * 13 11 10 16 16 H 1.48503 * 109.46849 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47348 * 119.99219 * 15 13 11 18 18 H 1.48503 * 109.47130 * 239.99691 * 15 13 11 19 19 C 1.52994 * 117.50338 * 159.85938 * 10 9 8 20 20 C 1.52997 * 117.50056 * 91.19802 * 10 9 8 21 21 C 1.40135 * 119.61852 * 359.97438 * 5 4 3 22 22 O 1.35649 * 120.15125 * 179.97438 * 21 5 4 23 23 C 1.38061 * 119.80601 * 180.30008 * 2 1 3 24 24 C 1.50702 * 119.95775 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.47020 * 89.99750 * 1 2 3 26 26 H 1.09002 * 109.47430 * 209.99720 * 1 2 3 27 27 H 1.08999 * 109.46988 * 330.00206 * 1 2 3 28 28 H 1.07999 * 119.85010 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.04078 * 179.97438 * 4 3 2 30 30 H 0.97003 * 119.99773 * 5.44140 * 8 6 5 31 31 H 1.09002 * 109.47502 * 304.71659 * 9 8 6 32 32 H 1.09002 * 109.46941 * 64.71656 * 9 8 6 33 33 H 0.97005 * 120.00119 * 185.01579 * 14 13 11 34 34 H 1.09003 * 117.49512 * 0.02562 * 19 10 9 35 35 H 1.08999 * 117.50177 * 145.01538 * 19 10 9 36 36 H 1.09001 * 117.50046 * 214.98454 * 20 10 9 37 37 H 1.09001 * 117.49535 * 359.97438 * 20 10 9 38 38 H 0.96701 * 114.00385 * 90.00239 * 22 21 5 39 39 H 1.09000 * 109.47520 * 270.25730 * 24 23 2 40 40 H 1.09005 * 109.46666 * 30.26255 * 24 23 2 41 41 H 1.09005 * 109.46760 * 150.25188 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2022 0.0000 4 6 3.5735 1.2141 0.0005 5 6 4.2805 0.0091 0.0005 6 6 5.7558 0.0146 0.0017 7 8 6.3675 -1.0325 0.0905 8 7 6.4255 1.1801 -0.0958 9 6 7.8856 1.1782 -0.2146 10 6 8.4012 2.6186 -0.1906 11 6 7.7894 3.5450 -1.2098 12 1 7.6219 4.5833 -0.9640 13 6 7.4434 3.0670 -2.4559 14 7 7.6269 1.7978 -2.7476 15 14 6.7141 4.2222 -3.7300 16 1 6.6105 5.5885 -3.1575 17 1 7.5894 4.2527 -4.9292 18 1 5.3623 3.7437 -4.1158 19 6 9.8722 2.8366 0.1691 20 6 8.7757 3.2124 1.1688 21 6 3.5803 -1.2048 0.0005 22 8 4.2558 -2.3810 0.0000 23 6 2.1932 -1.1980 -0.0063 24 6 1.4343 -2.4999 -0.0125 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6500 2.1343 0.0004 29 1 4.1061 2.1536 0.0001 30 1 5.9407 2.0203 -0.0872 31 1 8.3173 0.6239 0.6187 32 1 8.1732 0.7050 -1.1535 33 1 7.4521 1.4764 -3.6460 34 1 10.4729 1.9538 0.3882 35 1 10.3974 3.6502 -0.3312 36 1 8.5799 4.2731 1.3259 37 1 8.6544 2.5770 2.0461 38 1 4.4521 -2.7224 0.8832 39 1 1.2477 -2.8167 1.0136 40 1 0.4842 -2.3642 -0.5294 41 1 2.0221 -3.2606 -0.5265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437000782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:50 Heat of formation + Delta-G solvation = -37.085164 kcal Electronic energy + Delta-G solvation = -23195.271780 eV Core-core repulsion = 19847.819164 eV Total energy + Delta-G solvation = -3347.452616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17480 -38.23666 -36.77282 -36.46242 -33.54343 -32.70497 -32.14478 -30.93636 -27.82480 -26.85447 -25.76759 -24.95056 -22.02500 -21.66013 -21.22229 -19.29642 -19.22693 -17.81531 -17.03114 -16.29999 -15.88723 -15.16757 -14.80527 -14.57791 -14.29438 -14.02021 -13.90822 -13.63448 -13.32056 -12.94774 -12.87446 -12.73336 -12.35544 -12.28407 -11.84713 -11.55211 -11.53890 -11.30195 -11.22859 -11.11528 -10.72849 -10.51908 -10.37220 -10.26361 -9.69278 -9.08211 -8.89539 -8.85071 -8.51865 -8.40224 -8.28526 -7.76336 -6.01862 -4.21858 1.07250 1.38758 3.19566 3.29918 3.31883 3.33228 4.03486 4.23803 4.29137 4.45760 4.79999 4.83800 4.94688 5.11612 5.22146 5.33295 5.46376 5.47744 5.55917 5.57866 5.69494 5.74446 5.84154 6.01493 6.03449 6.18550 6.31034 6.41935 6.51059 6.54679 6.59046 6.62186 6.73444 6.89206 6.91229 7.11044 7.25807 7.57243 7.67110 7.95827 7.96744 8.30122 8.60281 8.82333 9.21790 9.41797 10.87750 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.005163 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.712011 B = 5421.904668 C = 6200.837457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.073 4.073 5 C -0.150 4.150 6 C 0.546 3.454 7 O -0.550 6.550 8 N -0.677 5.677 9 C 0.165 3.835 10 C 0.035 3.965 11 C -0.497 4.497 12 H 0.062 0.938 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.198 4.198 20 C -0.212 4.212 21 C 0.163 3.837 22 O -0.473 6.473 23 C -0.129 4.129 24 C -0.109 4.109 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.397 0.603 31 H 0.023 0.977 32 H 0.114 0.886 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.390 0.610 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.246 -3.562 6.415 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.061 4.061 3 C -0.155 4.155 4 C -0.091 4.091 5 C -0.153 4.153 6 C 0.332 3.668 7 O -0.431 6.431 8 N -0.324 5.324 9 C 0.042 3.958 10 C 0.034 3.966 11 C -0.535 4.535 12 H 0.080 0.920 13 C -0.131 4.131 14 N -0.503 5.503 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.236 4.236 20 C -0.249 4.249 21 C 0.117 3.883 22 O -0.283 6.283 23 C -0.130 4.130 24 C -0.165 4.165 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.232 0.768 31 H 0.042 0.958 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.247 0.753 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.883 -4.390 5.701 14.757 hybrid contribution -0.311 1.171 -0.326 1.254 sum -13.194 -3.220 5.375 14.606 Atomic orbital electron populations 1.20844 0.91082 1.02820 1.02449 1.19745 0.95952 0.92180 0.98223 1.20925 0.93926 0.97535 1.03069 1.21342 0.94230 0.97391 0.96177 1.20676 0.94879 0.93530 1.06244 1.17874 0.86037 0.84589 0.78339 1.90703 1.69353 1.31586 1.51449 1.45614 1.09035 1.07277 1.70504 1.21106 0.77547 0.95712 1.01434 1.19248 0.92553 0.93123 0.91638 1.20558 1.40880 0.94991 0.97024 0.92007 1.25013 0.94832 0.94863 0.98383 1.69867 1.47509 1.12918 1.19984 0.86541 0.78995 0.80991 0.81600 1.19687 1.20828 1.20839 1.22931 0.94084 1.01623 1.04995 1.22951 1.07681 0.99994 0.94301 1.18260 0.88658 0.85037 0.96381 1.84714 1.76191 1.34465 1.32976 1.19978 0.92617 0.95792 1.04625 1.20672 0.99622 0.94229 1.02020 0.90979 0.91265 0.91371 0.85525 0.84874 0.76751 0.95841 0.86873 0.92652 0.91452 0.90212 0.90642 0.91369 0.75316 0.91551 0.91452 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.17 36.00 0.33 -0.68 16 2 C -0.06 -0.76 5.88 -104.57 -0.62 -1.37 16 3 C -0.14 -1.81 9.67 -39.63 -0.38 -2.19 16 4 C -0.07 -1.15 9.53 -39.20 -0.37 -1.53 16 5 C -0.15 -2.77 5.89 -104.85 -0.62 -3.39 16 6 C 0.55 12.07 7.75 -12.47 -0.10 11.97 16 7 O -0.55 -13.60 15.16 -16.54 -0.25 -13.85 16 8 N -0.68 -15.07 5.12 -61.35 -0.31 -15.38 16 9 C 0.16 3.99 4.63 -4.04 -0.02 3.97 16 10 C 0.04 0.83 2.06 -155.66 -0.32 0.51 16 11 C -0.50 -12.56 8.31 -34.44 -0.29 -12.85 16 12 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 13 C 0.07 1.88 5.28 -17.82 -0.09 1.78 16 14 N -0.87 -23.29 10.22 55.43 0.57 -22.73 16 15 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.20 -4.34 9.96 -26.70 -0.27 -4.61 16 20 C -0.21 -4.43 9.92 -26.70 -0.26 -4.70 16 21 C 0.16 2.74 6.69 -38.69 -0.26 2.49 16 22 O -0.47 -7.98 10.64 -40.47 -0.43 -8.41 16 23 C -0.13 -1.77 5.89 -104.51 -0.62 -2.39 16 24 C -0.11 -1.14 8.95 36.01 0.32 -0.82 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.52 6.69 -51.93 -0.35 0.18 16 27 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.13 2.03 6.42 -52.49 -0.34 1.69 16 30 H 0.40 8.39 5.99 -40.82 -0.24 8.14 16 31 H 0.02 0.56 8.05 -51.93 -0.42 0.14 16 32 H 0.11 3.12 5.90 -51.93 -0.31 2.81 16 33 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.39 5.02 9.06 45.56 0.41 5.43 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 41 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -30.38 339.05 -8.80 -39.19 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -4.90 Total: 14.83 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.56 Total: -13.80 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.25 Total: -38.11 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.68 Total: -22.26 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.38 -8.80 -39.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437000782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.100 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds