Wall clock time and date at job start Tue Mar 31 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38553 * 119.80614 * 2 1 4 4 C 1.37790 * 120.29773 * 179.97438 * 3 2 1 5 5 C 1.39706 * 119.91112 * 0.02582 * 4 3 2 6 6 C 1.47531 * 120.19095 * 180.02562 * 5 4 3 7 7 O 1.21589 * 120.00006 * 175.15992 * 6 5 4 8 8 N 1.34781 * 120.00309 * 355.15801 * 6 5 4 9 9 C 1.46494 * 120.00184 * 185.43289 * 8 6 5 10 10 C 1.53002 * 109.47323 * 184.71526 * 9 8 6 11 11 C 1.50704 * 115.54812 * 305.53144 * 10 9 8 12 12 H 1.08005 * 119.99923 * 145.07868 * 11 10 9 13 13 C 1.37874 * 120.00101 * 325.08627 * 11 10 9 14 14 N 1.31515 * 119.99878 * 1.11919 * 13 11 10 15 15 Si 1.86803 * 120.00322 * 181.12528 * 13 11 10 16 16 H 1.48503 * 109.46849 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47348 * 119.99219 * 15 13 11 18 18 H 1.48503 * 109.47130 * 239.99691 * 15 13 11 19 19 C 1.52994 * 117.50338 * 159.85938 * 10 9 8 20 20 C 1.52997 * 117.50056 * 91.19802 * 10 9 8 21 21 C 1.40135 * 119.61852 * 359.97438 * 5 4 3 22 22 O 1.35649 * 120.15125 * 179.97438 * 21 5 4 23 23 C 1.38061 * 119.80601 * 180.30008 * 2 1 3 24 24 C 1.50702 * 119.95775 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.47020 * 89.99750 * 1 2 3 26 26 H 1.09002 * 109.47430 * 209.99720 * 1 2 3 27 27 H 1.08999 * 109.46988 * 330.00206 * 1 2 3 28 28 H 1.07999 * 119.85010 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.04078 * 179.97438 * 4 3 2 30 30 H 0.97003 * 119.99773 * 5.44140 * 8 6 5 31 31 H 1.09002 * 109.47502 * 304.71659 * 9 8 6 32 32 H 1.09002 * 109.46941 * 64.71656 * 9 8 6 33 33 H 0.97005 * 120.00119 * 185.01579 * 14 13 11 34 34 H 1.09003 * 117.49512 * 0.02562 * 19 10 9 35 35 H 1.08999 * 117.50177 * 145.01538 * 19 10 9 36 36 H 1.09001 * 117.50046 * 214.98454 * 20 10 9 37 37 H 1.09001 * 117.49535 * 359.97438 * 20 10 9 38 38 H 0.96701 * 114.00385 * 90.00239 * 22 21 5 39 39 H 1.09000 * 109.47520 * 270.25730 * 24 23 2 40 40 H 1.09005 * 109.46666 * 30.26255 * 24 23 2 41 41 H 1.09005 * 109.46760 * 150.25188 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2022 0.0000 4 6 3.5735 1.2141 0.0005 5 6 4.2805 0.0091 0.0005 6 6 5.7558 0.0146 0.0017 7 8 6.3675 -1.0325 0.0905 8 7 6.4255 1.1801 -0.0958 9 6 7.8856 1.1782 -0.2146 10 6 8.4012 2.6186 -0.1906 11 6 7.7894 3.5450 -1.2098 12 1 7.6219 4.5833 -0.9640 13 6 7.4434 3.0670 -2.4559 14 7 7.6269 1.7978 -2.7476 15 14 6.7141 4.2222 -3.7300 16 1 6.6105 5.5885 -3.1575 17 1 7.5894 4.2527 -4.9292 18 1 5.3623 3.7437 -4.1158 19 6 9.8722 2.8366 0.1691 20 6 8.7757 3.2124 1.1688 21 6 3.5803 -1.2048 0.0005 22 8 4.2558 -2.3810 0.0000 23 6 2.1932 -1.1980 -0.0063 24 6 1.4343 -2.4999 -0.0125 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6500 2.1343 0.0004 29 1 4.1061 2.1536 0.0001 30 1 5.9407 2.0203 -0.0872 31 1 8.3173 0.6239 0.6187 32 1 8.1732 0.7050 -1.1535 33 1 7.4521 1.4764 -3.6460 34 1 10.4729 1.9538 0.3882 35 1 10.3974 3.6502 -0.3312 36 1 8.5799 4.2731 1.3259 37 1 8.6544 2.5770 2.0461 38 1 4.4521 -2.7224 0.8832 39 1 1.2477 -2.8167 1.0136 40 1 0.4842 -2.3642 -0.5294 41 1 2.0221 -3.2606 -0.5265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437000782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:48 Heat of formation + Delta-G solvation = -55.165796 kcal Electronic energy + Delta-G solvation = -23196.055815 eV Core-core repulsion = 19847.819164 eV Total energy + Delta-G solvation = -3348.236651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46486 -39.83745 -38.39428 -37.82928 -35.00461 -34.27949 -33.95848 -31.95938 -28.99861 -28.08736 -27.58597 -26.49440 -23.32885 -22.94409 -22.80221 -21.15887 -20.75563 -19.17390 -18.54934 -17.80058 -17.34587 -16.77873 -16.37444 -16.12920 -15.87545 -15.49385 -15.17775 -14.88251 -14.67235 -14.56222 -13.88657 -13.67391 -13.64290 -13.51659 -13.34725 -13.25693 -12.96215 -12.63418 -12.50063 -12.38381 -12.28110 -12.26668 -12.05708 -11.63833 -11.51513 -10.94351 -10.75311 -10.58615 -10.16290 -9.79823 -9.55724 -9.44878 -7.96986 -6.22656 -0.15436 0.26826 1.39814 1.45069 1.54412 1.97000 2.39459 2.48381 2.80469 3.06322 3.26923 3.61928 3.79661 3.83184 4.00895 4.20390 4.24285 4.29219 4.51173 4.59779 4.65230 4.73717 4.77752 4.78835 4.83014 4.88518 4.94023 4.94364 5.10621 5.21018 5.25322 5.29740 5.30451 5.39387 5.50752 5.55567 5.58042 5.85410 5.88367 5.95038 6.35350 6.75670 6.82242 6.96209 7.42851 7.49747 8.90288 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.005163 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.712011 B = 5421.904668 C = 6200.837457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.134 4.134 4 C -0.081 4.081 5 C -0.187 4.187 6 C 0.540 3.460 7 O -0.589 6.589 8 N -0.676 5.676 9 C 0.177 3.823 10 C 0.006 3.994 11 C -0.501 4.501 12 H 0.062 0.938 13 C 0.033 3.967 14 N -0.894 5.894 15 Si 0.949 3.051 16 H -0.262 1.262 17 H -0.287 1.287 18 H -0.284 1.284 19 C -0.198 4.198 20 C -0.186 4.186 21 C 0.145 3.855 22 O -0.492 6.492 23 C -0.131 4.131 24 C -0.106 4.106 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.160 0.840 29 H 0.132 0.868 30 H 0.402 0.598 31 H 0.017 0.983 32 H 0.077 0.923 33 H 0.256 0.744 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.401 0.599 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.250 -2.429 7.032 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.151 4.151 4 C -0.100 4.100 5 C -0.191 4.191 6 C 0.328 3.672 7 O -0.472 6.472 8 N -0.323 5.323 9 C 0.053 3.947 10 C 0.005 3.995 11 C -0.538 4.538 12 H 0.080 0.920 13 C -0.168 4.168 14 N -0.531 5.531 15 Si 0.776 3.224 16 H -0.186 1.186 17 H -0.214 1.214 18 H -0.210 1.210 19 C -0.236 4.236 20 C -0.223 4.223 21 C 0.099 3.901 22 O -0.304 6.304 23 C -0.132 4.132 24 C -0.162 4.162 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.177 0.823 29 H 0.149 0.851 30 H 0.238 0.762 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.260 0.740 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.897 -3.230 6.340 17.416 hybrid contribution 0.571 0.795 -0.469 1.085 sum -15.325 -2.436 5.870 16.591 Atomic orbital electron populations 1.20970 0.87694 1.04710 1.03737 1.20279 0.98254 0.91198 0.95211 1.21308 0.92752 0.99434 1.01643 1.21422 0.95636 0.96286 0.96630 1.20534 0.92572 0.95605 1.10381 1.18526 0.87855 0.83786 0.77008 1.90653 1.70668 1.32651 1.53240 1.45531 1.08299 1.07744 1.70692 1.20758 0.78892 0.95925 0.99124 1.19293 0.93916 0.92713 0.93583 1.20744 1.40592 0.95072 0.97438 0.92003 1.25633 0.95283 0.95852 1.00046 1.70067 1.48916 1.14415 1.19737 0.85633 0.77890 0.79720 0.79196 1.18590 1.21376 1.20965 1.22956 0.93459 1.01960 1.05249 1.22941 1.05360 1.00655 0.93334 1.18570 0.90051 0.84295 0.97175 1.84662 1.76692 1.34723 1.34279 1.20335 0.91342 0.97975 1.03551 1.20738 0.99849 0.92109 1.03504 0.89699 0.89555 0.89480 0.82291 0.85054 0.76236 0.96518 0.90553 0.93423 0.90765 0.90164 0.89467 0.90058 0.74013 0.89495 0.89132 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.17 71.23 0.65 -0.80 16 2 C -0.05 -1.06 5.88 -19.83 -0.12 -1.18 16 3 C -0.13 -3.19 9.67 22.24 0.22 -2.97 16 4 C -0.08 -2.54 9.53 22.52 0.21 -2.33 16 5 C -0.19 -7.13 5.89 -20.01 -0.12 -7.25 16 6 C 0.54 25.09 7.75 86.69 0.67 25.76 16 7 O -0.59 -30.83 15.16 16.87 0.26 -30.57 16 8 N -0.68 -31.29 5.12 -466.27 -2.39 -33.68 16 9 C 0.18 8.90 4.63 86.38 0.40 9.30 16 10 C 0.01 0.27 2.06 -52.93 -0.11 0.16 16 11 C -0.50 -25.34 8.31 25.60 0.21 -25.13 16 12 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 13 C 0.03 1.71 5.28 84.65 0.45 2.16 16 14 N -0.89 -49.63 10.22 21.45 0.22 -49.41 16 15 Si 0.95 41.36 29.54 68.60 2.03 43.39 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 C -0.20 -8.61 9.96 30.62 0.30 -8.30 16 20 C -0.19 -7.55 9.92 30.62 0.30 -7.24 16 21 C 0.15 4.94 6.69 22.84 0.15 5.09 16 22 O -0.49 -17.20 10.64 -68.77 -0.73 -17.93 16 23 C -0.13 -3.36 5.89 -19.79 -0.12 -3.47 16 24 C -0.11 -1.93 8.95 71.24 0.64 -1.30 16 25 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.09 0.85 6.69 -2.39 -0.02 0.83 16 27 H 0.09 0.83 8.08 -2.39 -0.02 0.82 16 28 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.13 4.02 6.42 -2.91 -0.02 4.00 16 30 H 0.40 17.50 5.99 -92.71 -0.56 16.94 16 31 H 0.02 0.84 8.05 -2.39 -0.02 0.82 16 32 H 0.08 4.45 5.90 -2.39 -0.01 4.44 16 33 H 0.26 14.02 8.32 -92.70 -0.77 13.24 16 34 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 37 H 0.08 3.08 8.14 -2.39 -0.02 3.07 16 38 H 0.40 10.95 9.06 -74.06 -0.67 10.27 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.24 6.70 -2.38 -0.02 1.22 16 41 H 0.06 1.29 7.53 -2.38 -0.02 1.28 16 Total: -1.00 -67.77 339.05 2.98 -64.79 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: -0.16 Total: 40.91 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 3.75 Total: -17.50 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -2.17 Total: -83.09 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.48 Total: -48.51 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -67.77 2.98 -64.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437000782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.628 kcal (2) G-P(sol) polarization free energy of solvation -67.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds