Wall clock time and date at job start Tue Mar 31 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00281 * 2 1 3 5 5 C 1.52997 * 109.47164 * 299.99900 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 8 8 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 9 9 N 1.46499 * 109.47185 * 179.97438 * 7 6 5 10 10 S 1.65598 * 120.00175 * 265.00178 * 9 7 6 11 11 O 1.42098 * 104.28185 * 181.06984 * 10 9 7 12 12 O 1.42104 * 104.27400 * 308.92342 * 10 9 7 13 13 C 1.81394 * 104.45225 * 64.99533 * 10 9 7 14 14 C 1.53000 * 109.47526 * 180.02562 * 13 10 9 15 15 C 1.50696 * 109.47385 * 180.02562 * 14 13 10 16 16 H 1.08003 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00175 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99796 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47361 * 89.99903 * 19 17 15 21 21 H 1.48506 * 109.47180 * 209.99610 * 19 17 15 22 22 H 1.48498 * 109.47480 * 330.00026 * 19 17 15 23 23 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 24 24 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 25 25 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 26 26 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 29 29 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 30 30 H 1.09001 * 109.47002 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 32 32 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 34 34 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 35 35 H 1.09004 * 109.47006 * 180.02562 * 6 5 4 36 36 H 0.97000 * 120.00166 * 84.99732 * 9 7 6 37 37 H 1.09000 * 109.47527 * 300.00214 * 13 10 9 38 38 H 1.08999 * 109.47182 * 60.00005 * 13 10 9 39 39 H 1.09007 * 109.46914 * 300.00249 * 14 13 10 40 40 H 1.08999 * 109.47185 * 59.99641 * 14 13 10 41 41 H 0.96998 * 119.99944 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47153 * 299.99641 * 23 2 1 43 43 H 1.09001 * 109.46832 * 179.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5299 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0002 7 6 1.5300 -2.1638 1.2490 8 1 0.4400 -2.1639 1.2491 9 7 2.0179 -2.8548 2.4452 10 16 1.0681 -3.9865 3.1930 11 8 1.8423 -4.4142 4.3052 12 8 -0.1790 -3.3306 3.3774 13 6 0.9111 -5.3218 1.9754 14 6 0.0442 -6.4414 2.5550 15 6 -0.0857 -7.5510 1.5437 16 1 0.4010 -7.4660 0.5833 17 6 -0.8268 -8.6742 1.8440 18 7 -1.4199 -8.7775 3.0133 19 14 -0.9883 -10.0493 0.5901 20 1 0.1122 -11.0275 0.7835 21 1 -2.2948 -10.7322 0.7698 22 1 -0.9108 -9.4817 -0.7799 23 6 2.0400 -0.7213 1.2491 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 3.1299 -0.7209 -1.2497 31 1 1.6765 -0.2073 -2.1393 32 1 1.8935 -2.6776 -2.1392 33 1 0.4398 -2.1637 -1.2493 34 1 3.1299 -2.8850 -0.0003 35 1 1.6770 -3.9128 -0.0005 36 1 2.8974 -2.6495 2.7991 37 1 0.4454 -4.9344 1.0692 38 1 1.8997 -5.7139 1.7367 39 1 0.5095 -6.8289 3.4614 40 1 -0.9444 -6.0490 2.7935 41 1 -1.9416 -9.5675 3.2244 42 1 1.6768 -0.2075 2.1392 43 1 3.1300 -0.7217 1.2488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442757769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:26 Heat of formation + Delta-G solvation = -113.868704 kcal Electronic energy + Delta-G solvation = -22252.897692 eV Core-core repulsion = 19037.559443 eV Total energy + Delta-G solvation = -3215.338248 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.85805 -36.55020 -35.43276 -35.07777 -33.89966 -32.52448 -31.15346 -29.00984 -27.49753 -26.58791 -25.54462 -22.59020 -21.76265 -21.15245 -19.24777 -18.36628 -17.37834 -16.61424 -16.25366 -15.42169 -15.10804 -14.92386 -14.60908 -14.51224 -14.41770 -13.84085 -13.55169 -13.31821 -12.84416 -12.53109 -12.29107 -12.08428 -11.90875 -11.79526 -11.64586 -11.58403 -11.53619 -11.48264 -11.28370 -11.10427 -11.07457 -10.93011 -10.53031 -10.47312 -10.38264 -10.31836 -10.12847 -9.75539 -9.39839 -8.99861 -8.49773 -6.11900 -4.17363 0.83064 3.16160 3.26189 3.32475 3.35044 4.26342 4.38367 4.44226 4.47207 4.57877 4.77150 4.92034 4.94106 5.11172 5.19991 5.23305 5.27175 5.30826 5.42299 5.49014 5.49596 5.57576 5.65310 5.71119 5.76985 5.79046 5.83752 5.89369 5.91446 6.03662 6.09022 6.15396 6.22059 6.26998 6.41298 6.52799 7.16309 7.31129 7.37485 7.81061 8.18264 8.86003 9.47315 10.99196 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.004356 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.522122 B = 6426.974131 C = 7239.687405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.147 4.147 7 C 0.146 3.854 8 H 0.095 0.905 9 N -1.123 6.123 10 S 2.591 3.409 11 O -0.970 6.970 12 O -0.967 6.967 13 C -0.591 4.591 14 C 0.028 3.972 15 C -0.519 4.519 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.109 4.109 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.411 0.589 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.070 0.930 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.044 18.126 -8.501 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.146 4.146 5 C -0.160 4.160 6 C -0.186 4.186 7 C 0.039 3.961 8 H 0.113 0.887 9 N -0.878 5.878 10 S 2.688 3.312 11 O -0.960 6.960 12 O -0.957 6.957 13 C -0.724 4.724 14 C -0.011 4.011 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.148 4.148 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.244 0.756 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.387 18.088 -7.545 20.944 hybrid contribution 0.477 -1.003 -1.109 1.570 sum 7.863 17.086 -8.654 20.704 Atomic orbital electron populations 1.22041 0.94351 1.02628 1.01804 1.20529 0.96016 0.95030 0.94878 1.21850 1.00806 0.95321 1.01758 1.21625 1.00502 0.95485 0.97001 1.21567 1.01522 0.95303 0.97571 1.22250 1.01871 1.00227 0.94286 1.20875 0.99518 0.92059 0.83694 0.88737 1.55867 1.32668 1.57620 1.41690 1.05569 0.73804 0.75655 0.76135 1.93547 1.70413 1.82726 1.49307 1.93539 1.43963 1.72967 1.85261 1.30552 1.10274 1.15913 1.15688 1.18962 0.93810 0.91013 0.97311 1.20998 1.32170 1.01833 1.00889 0.92058 1.25066 0.95298 0.98513 0.95600 1.69956 1.32633 1.29055 1.21208 0.86477 0.77594 0.81852 0.81397 1.20487 1.21015 1.19766 1.21838 1.00895 0.94180 0.97929 0.92440 0.92650 0.91646 0.92769 0.92651 0.92603 0.91961 0.91940 0.91568 0.91177 0.91168 0.90659 0.75632 0.86218 0.86080 0.94883 0.94840 0.92541 0.91106 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.78 37.16 0.29 -1.08 16 2 C -0.06 -0.54 0.77 -154.51 -0.12 -0.66 16 3 C -0.14 -1.02 8.47 37.15 0.31 -0.70 16 4 C -0.11 -0.87 4.73 -26.73 -0.13 -1.00 16 5 C -0.12 -1.11 5.65 -26.73 -0.15 -1.26 16 6 C -0.15 -1.54 5.49 -26.73 -0.15 -1.69 16 7 C 0.15 1.70 2.41 -67.93 -0.16 1.53 16 8 H 0.09 1.21 5.76 -51.93 -0.30 0.91 16 9 N -1.12 -14.64 5.36 -4.89 -0.03 -14.66 16 10 S 2.59 46.80 5.44 -107.50 -0.58 46.21 16 11 O -0.97 -20.42 18.08 -57.54 -1.04 -21.46 16 12 O -0.97 -20.26 17.39 -57.54 -1.00 -21.27 16 13 C -0.59 -11.27 5.16 37.16 0.19 -11.08 16 14 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 15 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 C -0.11 -1.05 4.26 -26.73 -0.11 -1.16 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.65 4.81 -51.93 -0.25 0.40 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.86 5.78 -51.93 -0.30 0.56 16 36 H 0.41 4.47 8.80 -34.46 -0.30 4.16 16 37 H 0.12 2.04 6.78 -51.92 -0.35 1.69 16 38 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 39 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -33.92 343.08 -9.64 -43.56 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.30 Total: 1.68 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: -0.58 Total: -29.61 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.71 Total: -40.44 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -2.04 Total: -42.73 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 46.80 SS G_CDS: -0.58 Total: 46.21 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.92 -9.64 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442757769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.307 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds