Wall clock time and date at job start Tue Mar 31 2020 06:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00281 * 2 1 3 5 5 C 1.52997 * 109.47164 * 299.99900 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 8 8 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 9 9 N 1.46499 * 109.47185 * 179.97438 * 7 6 5 10 10 S 1.65598 * 120.00175 * 265.00178 * 9 7 6 11 11 O 1.42098 * 104.28185 * 181.06984 * 10 9 7 12 12 O 1.42104 * 104.27400 * 308.92342 * 10 9 7 13 13 C 1.81394 * 104.45225 * 64.99533 * 10 9 7 14 14 C 1.53000 * 109.47526 * 180.02562 * 13 10 9 15 15 C 1.50696 * 109.47385 * 180.02562 * 14 13 10 16 16 H 1.08003 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00175 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99796 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47361 * 89.99903 * 19 17 15 21 21 H 1.48506 * 109.47180 * 209.99610 * 19 17 15 22 22 H 1.48498 * 109.47480 * 330.00026 * 19 17 15 23 23 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 24 24 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 25 25 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 26 26 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 29 29 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 30 30 H 1.09001 * 109.47002 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 32 32 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 34 34 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 35 35 H 1.09004 * 109.47006 * 180.02562 * 6 5 4 36 36 H 0.97000 * 120.00166 * 84.99732 * 9 7 6 37 37 H 1.09000 * 109.47527 * 300.00214 * 13 10 9 38 38 H 1.08999 * 109.47182 * 60.00005 * 13 10 9 39 39 H 1.09007 * 109.46914 * 300.00249 * 14 13 10 40 40 H 1.08999 * 109.47185 * 59.99641 * 14 13 10 41 41 H 0.96998 * 119.99944 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47153 * 299.99641 * 23 2 1 43 43 H 1.09001 * 109.46832 * 179.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5299 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0002 7 6 1.5300 -2.1638 1.2490 8 1 0.4400 -2.1639 1.2491 9 7 2.0179 -2.8548 2.4452 10 16 1.0681 -3.9865 3.1930 11 8 1.8423 -4.4142 4.3052 12 8 -0.1790 -3.3306 3.3774 13 6 0.9111 -5.3218 1.9754 14 6 0.0442 -6.4414 2.5550 15 6 -0.0857 -7.5510 1.5437 16 1 0.4010 -7.4660 0.5833 17 6 -0.8268 -8.6742 1.8440 18 7 -1.4199 -8.7775 3.0133 19 14 -0.9883 -10.0493 0.5901 20 1 0.1122 -11.0275 0.7835 21 1 -2.2948 -10.7322 0.7698 22 1 -0.9108 -9.4817 -0.7799 23 6 2.0400 -0.7213 1.2491 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 3.1299 -0.7209 -1.2497 31 1 1.6765 -0.2073 -2.1393 32 1 1.8935 -2.6776 -2.1392 33 1 0.4398 -2.1637 -1.2493 34 1 3.1299 -2.8850 -0.0003 35 1 1.6770 -3.9128 -0.0005 36 1 2.8974 -2.6495 2.7991 37 1 0.4454 -4.9344 1.0692 38 1 1.8997 -5.7139 1.7367 39 1 0.5095 -6.8289 3.4614 40 1 -0.9444 -6.0490 2.7935 41 1 -1.9416 -9.5675 3.2244 42 1 1.6768 -0.2075 2.1392 43 1 3.1300 -0.7217 1.2488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442757769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:25 Heat of formation + Delta-G solvation = -137.517230 kcal Electronic energy + Delta-G solvation = -22253.923169 eV Core-core repulsion = 19037.559443 eV Total energy + Delta-G solvation = -3216.363725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.62375 -38.15554 -37.03244 -36.06227 -35.89661 -33.37389 -33.04914 -29.90967 -28.16316 -27.70760 -27.11022 -23.63090 -23.39123 -22.03091 -20.50917 -19.45858 -18.90857 -18.16495 -17.54858 -17.04473 -16.53069 -16.35774 -15.62084 -15.58811 -15.23865 -15.07961 -14.61239 -14.44892 -14.28009 -13.75778 -13.63410 -13.22766 -13.15737 -13.07835 -12.94171 -12.89550 -12.83906 -12.67128 -12.49197 -12.33400 -12.22003 -12.18535 -12.00037 -11.79516 -11.75027 -11.29312 -11.22012 -10.97595 -10.90347 -10.64344 -10.25550 -8.25683 -6.39656 -0.67667 1.41088 1.42908 1.54008 1.84106 2.38263 2.79669 3.07885 3.25470 3.66863 3.78897 3.83217 4.01759 4.10044 4.14661 4.20291 4.31310 4.48124 4.51376 4.55514 4.66975 4.73972 4.82188 4.85858 4.94431 5.02786 5.11328 5.14748 5.20862 5.25311 5.26183 5.27345 5.30123 5.37082 5.47059 5.50409 5.55325 5.68425 5.69411 6.06282 6.18258 6.73950 7.30528 8.86746 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.004356 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.522122 B = 6426.974131 C = 7239.687405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.062 4.062 3 C -0.137 4.137 4 C -0.104 4.104 5 C -0.122 4.122 6 C -0.148 4.148 7 C 0.137 3.863 8 H 0.079 0.921 9 N -1.102 6.102 10 S 2.615 3.385 11 O -1.001 7.001 12 O -0.999 6.999 13 C -0.587 4.587 14 C 0.021 3.979 15 C -0.537 4.537 16 H 0.077 0.923 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.974 3.026 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.257 1.257 23 C -0.107 4.107 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.425 0.575 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.005 0.995 40 H 0.006 0.994 41 H 0.267 0.733 42 H 0.063 0.937 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 19.007 -10.964 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.063 4.063 3 C -0.194 4.194 4 C -0.142 4.142 5 C -0.161 4.161 6 C -0.187 4.187 7 C 0.031 3.969 8 H 0.097 0.903 9 N -0.863 5.863 10 S 2.712 3.288 11 O -0.991 6.991 12 O -0.989 6.989 13 C -0.719 4.719 14 C -0.018 4.018 15 C -0.576 4.576 16 H 0.095 0.905 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.180 1.180 23 C -0.146 4.146 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.261 0.739 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.981 18.974 -10.013 23.258 hybrid contribution -0.008 -1.192 -0.334 1.238 sum 8.974 17.783 -10.348 22.446 Atomic orbital electron populations 1.22076 0.95204 1.01869 1.02035 1.20533 0.95332 0.95853 0.94539 1.21820 1.01332 0.94236 1.02052 1.21607 1.01079 0.94503 0.96991 1.21587 1.01181 0.96164 0.97123 1.22261 1.02815 0.99511 0.94114 1.21124 0.98947 0.93519 0.83324 0.90275 1.55365 1.32788 1.55977 1.42143 1.04538 0.73256 0.75545 0.75451 1.93497 1.70950 1.83551 1.51131 1.93498 1.46082 1.73549 1.85734 1.30445 1.10358 1.14541 1.16573 1.18822 0.93490 0.92944 0.96562 1.21507 1.31971 1.02415 1.01727 0.90531 1.26118 0.94864 1.01556 0.97687 1.70106 1.33711 1.30081 1.23556 0.85314 0.77593 0.78249 0.79108 1.19634 1.20896 1.18047 1.21856 1.01913 0.92457 0.98418 0.93148 0.91539 0.92914 0.91888 0.91855 0.92896 0.90912 0.90909 0.90637 0.91896 0.89615 0.91791 0.73879 0.84117 0.83803 0.97630 0.97580 0.92416 0.91799 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 7.78 71.98 0.56 -2.07 16 2 C -0.06 -0.90 0.77 -52.18 -0.04 -0.94 16 3 C -0.14 -1.62 8.47 71.98 0.61 -1.01 16 4 C -0.10 -1.35 4.73 30.60 0.14 -1.21 16 5 C -0.12 -1.95 5.65 30.59 0.17 -1.77 16 6 C -0.15 -2.77 5.49 30.59 0.17 -2.60 16 7 C 0.14 2.99 2.41 44.99 0.11 3.10 16 8 H 0.08 2.00 5.76 -2.39 -0.01 1.99 16 9 N -1.10 -27.36 5.36 -169.39 -0.91 -28.27 16 10 S 2.62 95.17 5.44 -56.49 -0.31 94.86 16 11 O -1.00 -42.68 18.08 -127.65 -2.31 -44.99 16 12 O -1.00 -42.84 17.39 -127.65 -2.22 -45.06 16 13 C -0.59 -22.31 5.16 71.98 0.37 -21.94 16 14 C 0.02 1.09 4.98 29.85 0.15 1.24 16 15 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 16 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 17 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 18 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 19 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 C -0.11 -1.83 4.26 30.59 0.13 -1.70 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 1.02 4.81 -2.39 -0.01 1.01 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.09 6.43 -2.39 -0.02 1.08 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.34 5.78 -2.38 -0.01 1.33 16 36 H 0.42 8.42 8.80 -96.75 -0.85 7.57 16 37 H 0.14 4.70 6.78 -2.39 -0.02 4.69 16 38 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 39 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 40 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -74.16 343.08 -0.23 -74.39 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.13 Total: 18.86 kcal Atomic # 6 Polarization: -61.25 SS G_CDS: 3.07 Total: -58.18 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -0.62 Total: -85.13 kcal Atomic # 8 Polarization: -85.52 SS G_CDS: -4.53 Total: -90.05 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 95.17 SS G_CDS: -0.31 Total: 94.86 kcal Total: -74.16 -0.23 -74.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442757769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.131 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds