Wall clock time and date at job start Tue Mar 31 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48497 * 109.47066 * 269.99937 * 3 2 1 5 5 H 1.48506 * 109.47038 * 29.99993 * 3 2 1 6 6 H 1.48497 * 109.47108 * 149.99310 * 3 2 1 7 7 C 1.38799 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99431 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00214 * 180.02562 * 7 2 1 10 10 C 1.80999 * 100.00028 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47294 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47099 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99583 * 66.05213 * 13 12 11 15 15 C 1.52997 * 109.46647 * 199.66575 * 14 13 12 16 16 O 1.42897 * 109.47483 * 63.90620 * 15 14 13 17 17 C 1.46899 * 110.99914 * 190.00061 * 13 12 11 18 18 C 1.53175 * 109.54543 * 309.74228 * 17 13 12 19 19 C 1.53098 * 109.16640 * 176.84746 * 18 17 13 20 20 O 1.42900 * 109.41068 * 302.39105 * 19 18 17 21 21 C 1.42900 * 114.10170 * 61.15676 * 20 19 18 22 22 C 1.53097 * 109.41416 * 298.84149 * 21 20 19 23 23 H 0.97000 * 120.00082 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46912 * 59.99790 * 10 9 7 25 25 H 1.09002 * 109.47261 * 300.00304 * 10 9 7 26 26 H 1.09007 * 109.47183 * 60.00173 * 11 10 9 27 27 H 1.09002 * 109.47439 * 300.00412 * 11 10 9 28 28 H 1.09004 * 109.47060 * 60.00464 * 12 11 10 29 29 H 1.08998 * 109.47453 * 300.00107 * 12 11 10 30 30 H 1.09003 * 109.47111 * 319.66452 * 14 13 12 31 31 H 1.08997 * 109.47463 * 79.66701 * 14 13 12 32 32 H 1.09005 * 109.46884 * 183.90254 * 15 14 13 33 33 H 1.08998 * 109.47416 * 303.90248 * 15 14 13 34 34 H 0.96695 * 114.00621 * 179.97438 * 16 15 14 35 35 H 1.09002 * 109.61381 * 189.51878 * 17 13 12 36 36 H 1.09003 * 109.52030 * 296.75165 * 18 17 13 37 37 H 1.08999 * 109.52765 * 56.94055 * 18 17 13 38 38 H 1.08999 * 109.48296 * 182.40509 * 19 18 17 39 39 H 1.09001 * 109.47804 * 62.37400 * 19 18 17 40 40 H 1.08996 * 109.48135 * 178.85546 * 21 20 19 41 41 H 1.09007 * 109.48725 * 58.82435 * 21 20 19 42 42 H 1.08998 * 109.52285 * 297.70045 * 22 21 20 43 43 H 1.08999 * 109.51751 * 177.51211 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5957 -3.2363 0.0008 12 6 5.8614 -4.7430 0.0012 13 7 7.3104 -4.9847 0.0005 14 6 7.9219 -4.5218 1.2534 15 6 9.4252 -4.3272 1.0457 16 8 9.6434 -3.2902 0.0871 17 6 7.6073 -6.4036 -0.2373 18 6 6.7763 -7.2678 0.7161 19 6 7.0330 -8.7454 0.4080 20 8 6.7088 -9.0088 -0.9586 21 6 7.4875 -8.2639 -1.8971 22 6 7.2491 -6.7670 -1.6816 23 1 -0.4850 0.8400 0.0004 24 1 3.6440 -3.4313 -0.8894 25 1 3.6433 -3.4318 0.8906 26 1 6.0387 -2.7894 0.8909 27 1 6.0387 -2.7891 -0.8891 28 1 5.4184 -5.1903 -0.8886 29 1 5.4186 -5.1899 0.8914 30 1 7.4705 -3.5749 1.5499 31 1 7.7561 -5.2636 2.0346 32 1 9.8900 -4.0507 1.9921 33 1 9.8650 -5.2560 0.6826 34 1 10.5763 -3.1120 -0.0942 35 1 8.6678 -6.5891 -0.0669 36 1 7.0647 -7.0550 1.7455 37 1 5.7179 -7.0460 0.5800 38 1 6.4118 -9.3648 1.0549 39 1 8.0838 -8.9760 0.5834 40 1 7.1937 -8.5365 -2.9107 41 1 8.5443 -8.4882 -1.7521 42 1 6.2002 -6.5349 -1.8661 43 1 7.8755 -6.1961 -2.3669 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444772449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:12 Heat of formation + Delta-G solvation = -130.402681 kcal Electronic energy + Delta-G solvation = -21518.969694 eV Core-core repulsion = 18302.914479 eV Total energy + Delta-G solvation = -3216.055215 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98700 -38.75417 -37.16259 -34.79325 -34.68401 -32.71518 -31.99454 -29.80820 -28.00714 -26.79856 -24.86108 -24.45816 -23.07419 -22.22398 -20.14002 -19.64051 -18.32970 -17.46771 -17.13930 -17.11176 -16.90186 -16.46001 -16.00204 -15.87599 -15.65454 -15.15634 -14.96449 -14.63165 -14.49330 -14.21278 -13.83820 -13.69568 -13.46507 -13.27738 -13.04970 -12.98251 -12.68484 -12.39546 -12.21970 -12.09209 -11.85535 -11.77473 -11.59641 -11.49076 -11.17463 -11.11729 -10.76373 -10.57939 -10.54382 -9.16278 -9.00739 -8.53206 -6.24764 1.10980 1.31400 1.47164 1.72465 2.24187 2.66785 2.81452 2.84798 2.99738 3.50073 3.73602 3.78939 3.90101 4.02373 4.07443 4.14668 4.25734 4.27452 4.30077 4.39790 4.43179 4.47273 4.54512 4.61433 4.66123 4.73948 4.76684 4.78890 4.81724 4.91617 4.98020 5.08672 5.13289 5.22465 5.25433 5.31971 5.68437 6.08268 6.08514 6.19671 6.27726 6.90868 7.07703 8.60088 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.003525 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.589214 B = 7942.344726 C = 8875.457907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.039 3.961 3 Si 0.926 3.074 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.230 1.230 7 C -0.524 4.524 8 H 0.049 0.951 9 S -0.219 6.219 10 C -0.068 4.068 11 C -0.080 4.080 12 C 0.069 3.931 13 N -0.526 5.526 14 C 0.038 3.962 15 C 0.086 3.914 16 O -0.583 6.583 17 C 0.086 3.914 18 C -0.189 4.189 19 C 0.065 3.935 20 O -0.407 6.407 21 C 0.063 3.937 22 C -0.145 4.145 23 H 0.277 0.723 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.389 0.611 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.858 -16.342 1.814 28.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.154 1.154 7 C -0.671 4.671 8 H 0.067 0.933 9 S 0.009 5.991 10 C -0.217 4.217 11 C -0.119 4.119 12 C -0.061 4.061 13 N -0.249 5.249 14 C -0.089 4.089 15 C 0.008 3.992 16 O -0.390 6.390 17 C -0.022 4.022 18 C -0.229 4.229 19 C -0.012 4.012 20 O -0.326 6.326 21 C -0.014 4.014 22 C -0.184 4.184 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.237 0.763 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 23.820 -15.196 1.384 28.289 hybrid contribution -1.165 -0.501 0.695 1.446 sum 22.656 -15.697 2.079 27.641 Atomic orbital electron populations 1.70038 1.07641 1.29148 1.49217 1.25772 0.95411 1.02731 0.92648 0.85710 0.80720 0.78613 0.80276 1.18585 1.18496 1.15368 1.22347 0.90087 0.96264 1.58440 0.93258 1.83886 1.07485 1.10201 1.97554 1.23068 1.00264 0.95120 1.03266 1.21191 0.91241 0.96609 1.02853 1.21992 0.88583 0.94559 1.00958 1.62099 1.10310 1.17421 1.35052 1.22370 0.95143 1.00723 0.90712 1.22194 0.94654 0.90494 0.91835 1.86610 1.31737 1.57166 1.63524 1.21818 0.99851 0.85785 0.94762 1.22901 1.01450 0.97355 1.01159 1.22602 1.01340 0.94647 0.82605 1.87918 1.62883 1.65487 1.16323 1.22687 0.95758 0.89515 0.93453 1.22225 1.02258 0.97102 0.96772 0.91345 0.91879 0.91735 0.91534 0.91615 0.90869 0.94285 0.91271 0.91638 0.91976 0.92692 0.76295 0.88658 0.89867 0.92160 0.88360 0.91461 0.88038 0.91467 0.92605 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.87 13.97 21.65 0.30 -57.57 16 2 C 0.04 2.35 5.50 84.86 0.47 2.82 16 3 Si 0.93 45.23 27.74 68.60 1.90 47.13 16 4 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.23 -10.89 6.74 99.48 0.67 -10.22 16 7 C -0.52 -31.88 10.04 67.95 0.68 -31.19 16 8 H 0.05 3.26 8.03 -2.91 -0.02 3.23 16 9 S -0.22 -11.04 19.41 -56.49 -1.10 -12.13 16 10 C -0.07 -2.76 5.67 71.98 0.41 -2.35 16 11 C -0.08 -2.60 5.19 30.59 0.16 -2.44 16 12 C 0.07 1.79 3.78 86.30 0.33 2.12 16 13 N -0.53 -11.54 4.30 -870.27 -3.74 -15.28 16 14 C 0.04 0.74 5.14 86.30 0.44 1.19 16 15 C 0.09 1.33 7.23 71.98 0.52 1.85 16 16 O -0.58 -11.63 13.59 -148.98 -2.02 -13.66 16 17 C 0.09 1.49 2.16 45.03 0.10 1.59 16 18 C -0.19 -3.12 4.68 30.69 0.14 -2.97 16 19 C 0.07 0.96 6.84 72.01 0.49 1.46 16 20 O -0.41 -8.00 10.76 -148.98 -1.60 -9.60 16 21 C 0.06 0.97 6.84 72.01 0.49 1.46 16 22 C -0.15 -2.64 5.49 30.69 0.17 -2.47 16 23 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 24 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.07 2.16 6.25 -2.38 -0.01 2.15 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 1.98 6.21 -2.39 -0.01 1.97 16 29 H 0.04 0.99 6.77 -2.39 -0.02 0.98 16 30 H 0.07 1.65 5.88 -2.39 -0.01 1.64 16 31 H 0.07 1.04 6.46 -2.39 -0.02 1.02 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.05 0.67 6.67 -2.39 -0.02 0.66 16 34 H 0.39 4.07 9.12 -74.06 -0.68 3.39 16 35 H 0.10 1.37 6.53 -2.39 -0.02 1.36 16 36 H 0.08 1.17 6.75 -2.39 -0.02 1.15 16 37 H 0.06 1.25 6.36 -2.39 -0.02 1.24 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.06 1.24 6.39 -2.39 -0.02 1.23 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -72.68 342.31 -1.57 -74.25 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.29 Total: 15.81 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 4.40 Total: -28.95 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -3.44 Total: -72.85 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -3.63 Total: -23.26 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Atomic # 16 Polarization: -11.04 SS G_CDS: -1.10 Total: -12.13 kcal Total: -72.68 -1.57 -74.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444772449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.151 kcal (2) G-P(sol) polarization free energy of solvation -72.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds