Wall clock time and date at job start Tue Mar 31 2020 07:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99613 * 2 1 4 4 C 1.53000 * 109.47203 * 179.97438 * 3 2 1 5 5 C 1.53004 * 113.28065 * 313.06490 * 4 3 2 6 6 C 1.53496 * 114.21010 * 180.02562 * 4 3 2 7 7 N 1.47064 * 87.98664 * 220.34274 * 6 4 3 8 8 C 1.34773 * 136.05855 * 207.08317 * 7 6 4 9 9 O 1.21586 * 120.00221 * 357.68431 * 8 7 6 10 10 C 1.47645 * 120.00250 * 177.96292 * 8 7 6 11 11 C 1.40016 * 119.89255 * 7.16797 * 10 8 7 12 12 C 1.36324 * 120.10553 * 179.71942 * 11 10 8 13 13 C 1.40883 * 119.88871 * 0.53540 * 12 11 10 14 14 C 1.41109 * 120.10605 * 179.71941 * 13 12 11 15 15 H 1.07989 * 120.00568 * 155.36639 * 14 13 12 16 16 C 1.40227 * 119.99305 * 335.36850 * 14 13 12 17 17 N 1.30644 * 120.00749 * 339.04858 * 16 14 13 18 18 Si 1.86803 * 119.99746 * 159.04683 * 16 14 13 19 19 H 1.48505 * 109.47311 * 94.73008 * 18 16 14 20 20 H 1.48501 * 109.47549 * 214.73203 * 18 16 14 21 21 H 1.48502 * 109.47338 * 334.73145 * 18 16 14 22 22 C 1.40898 * 119.79498 * 359.73948 * 13 12 11 23 23 C 1.36314 * 119.88901 * 359.97438 * 22 13 12 24 24 C 1.47070 * 87.88486 * 27.34319 * 7 6 4 25 25 H 1.09004 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47438 * 300.00093 * 1 2 3 27 27 H 1.09005 * 109.47338 * 60.00865 * 1 2 3 28 28 H 1.08998 * 109.47465 * 59.99680 * 3 2 1 29 29 H 1.09002 * 109.47360 * 299.99577 * 3 2 1 30 30 H 1.08998 * 109.47280 * 286.93228 * 5 4 3 31 31 H 1.08998 * 109.46988 * 46.93467 * 5 4 3 32 32 H 1.09000 * 109.46985 * 166.93476 * 5 4 3 33 33 H 1.08995 * 113.46868 * 105.56133 * 6 4 3 34 34 H 1.09004 * 113.51440 * 335.13118 * 6 4 3 35 35 H 1.07996 * 119.94719 * 359.97438 * 11 10 8 36 36 H 1.07994 * 120.05364 * 180.27703 * 12 11 10 37 37 H 0.96997 * 120.00510 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.04909 * 179.97438 * 22 13 12 39 39 H 1.08005 * 119.94203 * 179.97438 * 23 22 13 40 40 H 1.08998 * 113.47400 * 87.43900 * 24 7 6 41 41 H 1.09005 * 113.46638 * 217.87995 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.0621 0.1806 1.0278 6 6 4.2733 2.5308 0.0013 7 7 5.2311 1.9472 -0.9498 8 6 6.5243 2.1485 -1.2715 9 8 7.1561 3.0325 -0.7257 10 6 7.1723 1.2995 -2.2909 11 6 6.4073 0.3883 -3.0290 12 6 7.0001 -0.3937 -3.9753 13 6 8.3868 -0.2917 -4.2021 14 6 9.0062 -1.1031 -5.1764 15 1 9.9299 -0.7847 -5.6365 16 6 8.4222 -2.3228 -5.5472 17 7 7.5702 -2.9087 -4.7487 18 14 8.8625 -3.1101 -7.1830 19 1 9.9556 -4.0946 -6.9802 20 1 7.6704 -3.8012 -7.7366 21 1 9.3116 -2.0605 -8.1326 22 6 9.1535 0.6227 -3.4528 23 6 8.5507 1.4045 -2.5128 24 6 4.1549 1.0517 -1.4003 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 1.6884 1.8465 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.9631 0.5994 2.0293 31 1 3.4865 -0.7426 0.9616 32 1 5.1119 -0.0303 0.8244 33 1 4.7167 2.7822 0.9647 34 1 3.6874 3.3482 -0.4191 35 1 5.3451 0.3077 -2.8512 36 1 6.4085 -1.0930 -4.5472 37 1 7.1665 -3.7526 -5.0050 38 1 10.2168 0.7039 -3.6231 39 1 9.1376 2.1054 -1.9377 40 1 3.5372 1.4785 -2.1904 41 1 4.4976 0.0430 -1.6309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447881640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:57 Heat of formation + Delta-G solvation = -21.452903 kcal Electronic energy + Delta-G solvation = -22681.343872 eV Core-core repulsion = 19334.569122 eV Total energy + Delta-G solvation = -3346.774750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.53762 -38.26345 -37.39422 -36.64180 -33.85734 -31.82395 -30.15782 -29.46005 -27.56014 -27.23481 -26.06767 -25.79762 -24.77599 -21.57248 -20.92244 -19.30997 -18.54986 -17.47608 -16.58152 -16.48633 -16.14545 -15.87027 -15.58784 -15.11957 -14.37845 -13.99271 -13.76611 -13.28253 -13.25270 -13.14570 -12.92243 -12.69060 -12.27637 -12.09859 -11.86356 -11.79974 -11.58351 -11.40729 -11.26267 -11.23577 -10.95597 -10.91206 -10.62395 -10.28594 -10.00184 -9.81348 -9.45797 -9.24711 -8.89665 -8.28199 -7.68824 -7.52705 -7.04603 -4.57580 2.25802 2.90517 2.95420 3.02129 3.06246 3.31173 3.56133 3.74861 3.86566 4.29267 4.54433 4.79037 4.93259 4.98036 5.13708 5.18653 5.30202 5.42012 5.45447 5.47830 5.53003 5.59894 5.72261 5.81804 5.94331 5.99724 6.12821 6.21976 6.33637 6.42986 6.47042 6.80591 6.84392 6.98640 7.06737 7.15582 7.46892 7.70535 7.83963 7.89742 8.08533 8.33854 8.41671 8.64613 8.77934 9.05712 9.88493 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016821 B = 0.004130 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.229286 B = 6777.902057 C = 8140.480047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.081 3.919 4 C -0.100 4.100 5 C -0.118 4.118 6 C 0.115 3.885 7 N -0.646 5.646 8 C 0.602 3.398 9 O -0.574 6.574 10 C -0.280 4.280 11 C -0.074 4.074 12 C -0.182 4.182 13 C 0.130 3.870 14 C -0.445 4.445 15 H 0.085 0.915 16 C 0.077 3.923 17 N -0.768 5.768 18 Si 0.910 3.090 19 H -0.267 1.267 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.239 4.239 23 C -0.022 4.022 24 C 0.107 3.893 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.287 0.713 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.295 1.939 5.416 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.003 3.997 4 C -0.101 4.101 5 C -0.175 4.175 6 C -0.008 4.008 7 N -0.382 5.382 8 C 0.401 3.599 9 O -0.456 6.456 10 C -0.284 4.284 11 C -0.093 4.093 12 C -0.201 4.201 13 C 0.127 3.873 14 C -0.472 4.472 15 H 0.103 0.897 16 C -0.145 4.145 17 N -0.390 5.390 18 Si 0.733 3.267 19 H -0.192 1.192 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.259 4.259 23 C -0.041 4.041 24 C -0.016 4.016 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.729 2.056 5.675 14.088 hybrid contribution -0.176 -0.200 -0.764 0.809 sum -12.905 1.856 4.911 13.932 Atomic orbital electron populations 1.22732 0.81289 1.02732 0.99780 1.87920 1.19310 1.27579 1.95346 1.22360 0.92101 0.84871 1.00345 1.22350 0.92534 0.97436 0.97786 1.21379 1.01490 0.98200 0.96472 1.22836 0.88753 0.94681 0.94572 1.49281 1.08439 1.39709 1.40778 1.18232 0.77959 0.82616 0.81130 1.90642 1.63172 1.35273 1.56500 1.18790 0.94691 1.08002 1.06921 1.21066 0.98188 0.94530 0.95522 1.20912 0.94902 1.02475 1.01798 1.17781 0.91669 0.89177 0.88696 1.19831 1.07850 1.01698 1.17866 0.89700 1.26087 0.93307 0.97020 0.98052 1.69759 1.20854 1.14290 1.34123 0.86265 0.79212 0.79600 0.81625 1.19229 1.19701 1.18053 1.20700 0.98232 1.04827 1.02140 1.20350 0.92780 0.95639 0.95343 1.23302 0.86661 0.96573 0.95066 0.89663 0.94284 0.94129 0.92868 0.92797 0.92542 0.90990 0.91878 0.90581 0.90603 0.87713 0.86642 0.90201 0.88380 0.88212 0.90234 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.21 9.62 -35.23 -0.34 -4.55 16 3 C 0.08 0.79 5.52 37.16 0.20 1.00 16 4 C -0.10 -1.23 1.35 -153.86 -0.21 -1.44 16 5 C -0.12 -1.50 9.14 37.16 0.34 -1.16 16 6 C 0.12 1.58 7.77 -8.51 -0.07 1.51 16 7 N -0.65 -11.66 3.49 -186.20 -0.65 -12.30 16 8 C 0.60 13.65 8.00 -12.42 -0.10 13.55 16 9 O -0.57 -14.49 17.13 5.29 0.09 -14.40 16 10 C -0.28 -6.69 5.89 -104.73 -0.62 -7.30 16 11 C -0.07 -1.72 9.12 -39.60 -0.36 -2.08 16 12 C -0.18 -4.54 8.64 -39.27 -0.34 -4.88 16 13 C 0.13 3.37 5.57 -106.80 -0.59 2.78 16 14 C -0.45 -11.22 9.03 -37.75 -0.34 -11.56 16 15 H 0.08 2.04 7.93 -52.49 -0.42 1.63 16 16 C 0.08 1.82 5.06 -17.31 -0.09 1.73 16 17 N -0.77 -18.54 11.15 55.56 0.62 -17.92 16 18 Si 0.91 17.34 29.61 -169.99 -5.03 12.30 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 22 C -0.24 -5.94 9.73 -39.27 -0.38 -6.32 16 23 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 24 C 0.11 1.58 5.61 -8.37 -0.05 1.54 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.48 7.89 -51.93 -0.41 0.07 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.90 7.26 -51.93 -0.38 0.52 16 32 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 33 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 35 H 0.11 2.10 3.79 -52.49 -0.20 1.90 16 36 H 0.12 2.91 6.27 -52.49 -0.33 2.58 16 37 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 38 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.10 2.35 7.65 -52.48 -0.40 1.95 16 40 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.09 1.51 6.12 -51.93 -0.32 1.19 16 LS Contribution 339.34 15.07 5.11 5.11 Total: -1.00 -30.01 339.34 -7.85 -37.85 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.79 Total: 6.10 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.86 Total: -12.20 kcal Atomic # 7 Polarization: -30.20 SS G_CDS: -0.03 Total: -30.23 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.25 Total: -18.95 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.01 -7.85 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447881640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.402 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds