Wall clock time and date at job start Tue Mar 31 2020 07:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99613 * 2 1 4 4 C 1.53000 * 109.47203 * 179.97438 * 3 2 1 5 5 C 1.53004 * 113.28065 * 313.06490 * 4 3 2 6 6 C 1.53496 * 114.21010 * 180.02562 * 4 3 2 7 7 N 1.47064 * 87.98664 * 220.34274 * 6 4 3 8 8 C 1.34773 * 136.05855 * 207.08317 * 7 6 4 9 9 O 1.21586 * 120.00221 * 357.68431 * 8 7 6 10 10 C 1.47645 * 120.00250 * 177.96292 * 8 7 6 11 11 C 1.40016 * 119.89255 * 7.16797 * 10 8 7 12 12 C 1.36324 * 120.10553 * 179.71942 * 11 10 8 13 13 C 1.40883 * 119.88871 * 0.53540 * 12 11 10 14 14 C 1.41109 * 120.10605 * 179.71941 * 13 12 11 15 15 H 1.07989 * 120.00568 * 155.36639 * 14 13 12 16 16 C 1.40227 * 119.99305 * 335.36850 * 14 13 12 17 17 N 1.30644 * 120.00749 * 339.04858 * 16 14 13 18 18 Si 1.86803 * 119.99746 * 159.04683 * 16 14 13 19 19 H 1.48505 * 109.47311 * 94.73008 * 18 16 14 20 20 H 1.48501 * 109.47549 * 214.73203 * 18 16 14 21 21 H 1.48502 * 109.47338 * 334.73145 * 18 16 14 22 22 C 1.40898 * 119.79498 * 359.73948 * 13 12 11 23 23 C 1.36314 * 119.88901 * 359.97438 * 22 13 12 24 24 C 1.47070 * 87.88486 * 27.34319 * 7 6 4 25 25 H 1.09004 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47438 * 300.00093 * 1 2 3 27 27 H 1.09005 * 109.47338 * 60.00865 * 1 2 3 28 28 H 1.08998 * 109.47465 * 59.99680 * 3 2 1 29 29 H 1.09002 * 109.47360 * 299.99577 * 3 2 1 30 30 H 1.08998 * 109.47280 * 286.93228 * 5 4 3 31 31 H 1.08998 * 109.46988 * 46.93467 * 5 4 3 32 32 H 1.09000 * 109.46985 * 166.93476 * 5 4 3 33 33 H 1.08995 * 113.46868 * 105.56133 * 6 4 3 34 34 H 1.09004 * 113.51440 * 335.13118 * 6 4 3 35 35 H 1.07996 * 119.94719 * 359.97438 * 11 10 8 36 36 H 1.07994 * 120.05364 * 180.27703 * 12 11 10 37 37 H 0.96997 * 120.00510 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.04909 * 179.97438 * 22 13 12 39 39 H 1.08005 * 119.94203 * 179.97438 * 23 22 13 40 40 H 1.08998 * 113.47400 * 87.43900 * 24 7 6 41 41 H 1.09005 * 113.46638 * 217.87995 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.0621 0.1806 1.0278 6 6 4.2733 2.5308 0.0013 7 7 5.2311 1.9472 -0.9498 8 6 6.5243 2.1485 -1.2715 9 8 7.1561 3.0325 -0.7257 10 6 7.1723 1.2995 -2.2909 11 6 6.4073 0.3883 -3.0290 12 6 7.0001 -0.3937 -3.9753 13 6 8.3868 -0.2917 -4.2021 14 6 9.0062 -1.1031 -5.1764 15 1 9.9299 -0.7847 -5.6365 16 6 8.4222 -2.3228 -5.5472 17 7 7.5702 -2.9087 -4.7487 18 14 8.8625 -3.1101 -7.1830 19 1 9.9556 -4.0946 -6.9802 20 1 7.6704 -3.8012 -7.7366 21 1 9.3116 -2.0605 -8.1326 22 6 9.1535 0.6227 -3.4528 23 6 8.5507 1.4045 -2.5128 24 6 4.1549 1.0517 -1.4003 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 1.6884 1.8465 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.9631 0.5994 2.0293 31 1 3.4865 -0.7426 0.9616 32 1 5.1119 -0.0303 0.8244 33 1 4.7167 2.7822 0.9647 34 1 3.6874 3.3482 -0.4191 35 1 5.3451 0.3077 -2.8512 36 1 6.4085 -1.0930 -4.5472 37 1 7.1665 -3.7526 -5.0050 38 1 10.2168 0.7039 -3.6231 39 1 9.1376 2.1054 -1.9377 40 1 3.5372 1.4785 -2.1904 41 1 4.4976 0.0430 -1.6309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447881640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:56 Heat of formation + Delta-G solvation = -39.051180 kcal Electronic energy + Delta-G solvation = -22682.106990 eV Core-core repulsion = 19334.569122 eV Total energy + Delta-G solvation = -3347.537868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83359 -39.80557 -38.71891 -38.08059 -35.69309 -33.17895 -31.86212 -31.36009 -28.66871 -28.34646 -27.36524 -27.03097 -25.93699 -23.31919 -22.79029 -20.76334 -19.81862 -19.28786 -18.04933 -17.57744 -17.35390 -17.00341 -16.86553 -16.51879 -15.83056 -15.43066 -15.10541 -15.01188 -14.64008 -14.50170 -14.22093 -14.07193 -13.82596 -13.63075 -13.27992 -13.02245 -12.87501 -12.72629 -12.67548 -12.59094 -12.36228 -12.28748 -11.87509 -11.77816 -11.52813 -11.17799 -11.02828 -10.66900 -10.43366 -9.78321 -9.59654 -9.39758 -8.83299 -6.49265 0.42310 1.12355 1.37305 1.41764 1.54876 1.94459 2.07485 2.16929 2.70688 2.78382 3.30483 3.65158 3.68839 3.93019 4.07649 4.09039 4.28569 4.40297 4.44630 4.51551 4.54460 4.56403 4.65112 4.67088 4.73969 4.87997 4.89878 4.91060 4.96620 5.01226 5.03092 5.13689 5.18373 5.27863 5.38190 5.57630 5.81712 5.94212 5.99301 6.19597 6.32763 6.51304 6.74233 6.76305 6.87255 7.34526 8.13409 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016821 B = 0.004130 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.229286 B = 6777.902057 C = 8140.480047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.085 3.915 4 C -0.081 4.081 5 C -0.117 4.117 6 C 0.114 3.886 7 N -0.652 5.652 8 C 0.597 3.403 9 O -0.610 6.610 10 C -0.294 4.294 11 C -0.067 4.067 12 C -0.200 4.200 13 C 0.103 3.897 14 C -0.475 4.475 15 H 0.086 0.914 16 C 0.041 3.959 17 N -0.794 5.794 18 Si 0.986 3.014 19 H -0.260 1.260 20 H -0.260 1.260 21 H -0.257 1.257 22 C -0.254 4.254 23 C -0.033 4.033 24 C 0.098 3.902 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.110 0.890 37 H 0.298 0.702 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.701 1.659 5.156 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.008 3.992 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.008 4.008 7 N -0.386 5.386 8 C 0.394 3.606 9 O -0.496 6.496 10 C -0.298 4.298 11 C -0.085 4.085 12 C -0.220 4.220 13 C 0.100 3.900 14 C -0.502 4.502 15 H 0.104 0.896 16 C -0.179 4.179 17 N -0.417 5.417 18 Si 0.806 3.194 19 H -0.185 1.185 20 H -0.184 1.184 21 H -0.181 1.181 22 C -0.274 4.274 23 C -0.052 4.052 24 C -0.024 4.024 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.151 0.849 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.196 1.768 5.442 16.238 hybrid contribution 0.477 -0.137 -0.582 0.765 sum -14.720 1.631 4.860 15.587 Atomic orbital electron populations 1.22897 0.79568 1.03563 1.00937 1.87876 1.21199 1.28173 1.95615 1.22337 0.89579 0.84992 1.02301 1.22184 0.94584 0.95989 0.95428 1.21357 0.99506 0.98794 0.97736 1.23160 0.87683 0.96265 0.93737 1.49282 1.07826 1.40280 1.41171 1.17987 0.79628 0.82111 0.80879 1.90603 1.64650 1.36588 1.57713 1.19112 0.94806 1.08355 1.07542 1.21327 0.99598 0.93335 0.94289 1.20945 0.94760 1.03360 1.02902 1.18125 0.92437 0.89961 0.89465 1.20118 1.08623 1.02815 1.18607 0.89551 1.26942 0.92803 0.96806 1.01351 1.69775 1.21191 1.14994 1.35759 0.85125 0.79354 0.78484 0.76461 1.18452 1.18413 1.18068 1.20851 0.98734 1.05239 1.02536 1.20496 0.93551 0.95762 0.95418 1.23597 0.85887 0.95215 0.97671 0.89154 0.92865 0.93176 0.90599 0.91128 0.90764 0.90791 0.94965 0.90704 0.87560 0.84892 0.87194 0.89028 0.87649 0.88095 0.87705 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -7.76 9.62 -148.98 -1.43 -9.20 16 3 C 0.08 1.35 5.52 71.98 0.40 1.75 16 4 C -0.08 -1.79 1.35 -51.76 -0.07 -1.86 16 5 C -0.12 -2.82 9.14 71.98 0.66 -2.16 16 6 C 0.11 2.84 7.77 83.18 0.65 3.49 16 7 N -0.65 -22.92 3.49 -861.28 -3.00 -25.93 16 8 C 0.60 27.38 8.00 86.73 0.69 28.07 16 9 O -0.61 -31.39 17.13 -3.99 -0.07 -31.46 16 10 C -0.29 -14.40 5.89 -19.93 -0.12 -14.52 16 11 C -0.07 -3.14 9.12 22.25 0.20 -2.94 16 12 C -0.20 -10.28 8.64 22.47 0.19 -10.09 16 13 C 0.10 5.54 5.57 -21.28 -0.12 5.42 16 14 C -0.47 -24.45 9.03 23.46 0.21 -24.24 16 15 H 0.09 4.26 7.93 -2.92 -0.02 4.24 16 16 C 0.04 1.92 5.06 85.35 0.43 2.35 16 17 N -0.79 -38.49 11.15 21.87 0.24 -38.25 16 18 Si 0.99 34.97 29.61 68.60 2.03 37.00 16 19 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 20 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 21 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 22 C -0.25 -13.13 9.73 22.47 0.22 -12.91 16 23 C -0.03 -1.68 9.52 22.25 0.21 -1.46 16 24 C 0.10 2.73 5.61 83.27 0.47 3.20 16 25 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.51 8.14 -2.38 -0.02 0.50 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.92 7.89 -2.39 -0.02 0.90 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.75 7.26 -2.39 -0.02 1.74 16 32 H 0.03 0.96 7.94 -2.39 -0.02 0.94 16 33 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 34 H 0.11 2.08 8.11 -2.39 -0.02 2.07 16 35 H 0.13 5.31 3.79 -2.91 -0.01 5.30 16 36 H 0.11 5.67 6.27 -2.91 -0.02 5.65 16 37 H 0.30 12.77 8.29 -92.71 -0.77 12.00 16 38 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 39 H 0.10 4.98 7.65 -2.91 -0.02 4.96 16 40 H 0.11 2.43 7.93 -2.39 -0.02 2.41 16 41 H 0.08 2.40 6.12 -2.38 -0.01 2.39 16 Total: -1.00 -66.84 339.34 4.07 -62.77 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 1.03 Total: 29.41 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 5.28 Total: -24.34 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -2.76 Total: -64.18 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -1.50 Total: -40.65 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Total: -66.84 4.07 -62.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447881640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.715 kcal (2) G-P(sol) polarization free energy of solvation -66.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds