Wall clock time and date at job start Tue Mar 31 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38389 * 120.00980 * 2 1 4 4 C 1.38239 * 119.77076 * 180.02562 * 3 2 1 5 5 C 1.37973 * 120.35064 * 0.20923 * 4 3 2 6 6 C 1.39245 * 120.23504 * 0.02562 * 5 4 3 7 7 C 1.37692 * 120.01094 * 180.02562 * 2 1 3 8 8 C 1.51649 * 132.17961 * 359.09092 * 7 2 1 9 9 C 1.54713 * 101.94437 * 195.57297 * 8 7 2 10 10 H 1.09003 * 110.74433 * 93.09541 * 9 8 7 11 11 C 1.50695 * 110.74980 * 216.26336 * 9 8 7 12 12 O 1.21275 * 120.00080 * 115.00437 * 11 9 8 13 13 N 1.34780 * 119.99949 * 295.00314 * 11 9 8 14 14 C 1.46497 * 119.99981 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.47104 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47026 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47051 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99826 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99889 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99898 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00134 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47589 * 90.00021 * 21 19 17 23 23 H 1.48502 * 109.47244 * 209.99834 * 21 19 17 24 24 H 1.48491 * 109.47388 * 329.99920 * 21 19 17 25 25 O 1.36134 * 129.90189 * 179.02469 * 6 5 4 26 26 H 1.09001 * 109.47578 * 90.00034 * 1 2 3 27 27 H 1.09003 * 109.46888 * 210.00303 * 1 2 3 28 28 H 1.09005 * 109.47269 * 329.99988 * 1 2 3 29 29 H 1.08002 * 120.11587 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.82581 * 180.19378 * 4 3 2 31 31 H 1.07999 * 119.88306 * 179.97438 * 5 4 3 32 32 H 1.08994 * 110.93505 * 313.73646 * 8 7 2 33 33 H 1.08995 * 110.93189 * 77.41816 * 8 7 2 34 34 H 0.97001 * 119.99875 * 359.97438 * 13 11 9 35 35 H 1.09005 * 109.47107 * 299.99395 * 14 13 11 36 36 H 1.08994 * 109.47197 * 59.99605 * 14 13 11 37 37 H 1.09006 * 109.46983 * 299.99368 * 15 14 13 38 38 H 1.08994 * 109.47557 * 59.99652 * 15 14 13 39 39 H 1.08996 * 109.47185 * 299.99237 * 16 15 14 40 40 H 1.08993 * 109.47546 * 59.99855 * 16 15 14 41 41 H 0.97000 * 119.99746 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1984 0.0000 4 6 3.5815 1.1926 -0.0005 5 6 4.2737 -0.0009 -0.0054 6 6 3.5848 -1.2110 -0.0104 7 6 2.1957 -1.1923 -0.0005 8 6 1.7320 -2.6361 0.0167 9 6 3.0277 -3.3839 0.4109 10 1 3.0775 -3.5275 1.4902 11 6 3.1205 -4.7059 -0.3065 12 8 4.0067 -4.8981 -1.1117 13 7 2.2184 -5.6748 -0.0531 14 6 2.3089 -6.9602 -0.7500 15 6 1.1738 -7.8741 -0.2838 16 6 1.2680 -9.2163 -1.0121 17 6 0.1503 -10.1167 -0.5524 18 1 -0.5562 -9.7668 0.1857 19 6 0.0297 -11.3872 -1.0742 20 7 -0.9453 -12.1732 -0.6726 21 14 1.2521 -11.9927 -2.3503 22 1 2.3955 -12.6502 -1.6678 23 1 0.5858 -12.9680 -3.2504 24 1 1.7468 -10.8416 -3.1472 25 8 4.0602 -2.4864 -0.0334 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 1.6612 2.1349 0.0004 30 1 4.1226 2.1273 0.0026 31 1 5.3537 0.0034 -0.0062 32 1 0.9530 -2.7861 0.7641 33 1 1.3881 -2.9464 -0.9700 34 1 1.5098 -5.5212 0.5913 35 1 2.2257 -6.7975 -1.8246 36 1 3.2676 -7.4280 -0.5265 37 1 1.2566 -8.0369 0.7909 38 1 0.2153 -7.4061 -0.5076 39 1 1.1849 -9.0533 -2.0866 40 1 2.2265 -9.6846 -0.7886 41 1 -1.0299 -13.0672 -1.0395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448910362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:14 Heat of formation + Delta-G solvation = -57.885931 kcal Electronic energy + Delta-G solvation = -21781.701246 eV Core-core repulsion = 18433.346642 eV Total energy + Delta-G solvation = -3348.354604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67675 -39.45034 -37.79187 -35.60349 -33.84346 -33.32714 -31.85496 -31.27989 -30.05406 -27.51391 -26.84079 -24.64972 -22.82640 -22.31055 -21.20736 -20.89633 -20.06241 -17.79882 -17.56059 -16.96242 -16.70429 -16.31927 -15.61548 -15.37279 -14.83871 -14.34009 -14.18688 -14.06010 -13.91843 -13.67383 -13.42935 -13.22544 -12.80193 -12.74301 -12.67006 -12.27845 -11.99887 -11.96667 -11.84383 -11.36824 -11.14066 -11.09571 -10.93102 -10.25605 -10.02697 -9.82353 -9.63630 -9.26856 -9.02133 -9.01224 -8.58605 -8.43487 -6.09475 -4.08516 0.95052 1.04636 2.40621 2.53277 3.27312 3.29244 3.37068 3.41023 3.48349 4.00862 4.17373 4.41680 4.43663 4.54142 4.63274 4.71973 4.84253 5.00824 5.08807 5.23527 5.24600 5.27288 5.32737 5.39737 5.47044 5.48878 5.57765 5.79037 5.93562 6.00573 6.08408 6.21029 6.21673 6.27926 6.37352 6.59144 6.71988 6.87157 7.17880 7.31299 7.43925 7.72374 8.12028 8.46478 8.93976 9.52693 11.03662 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033246 B = 0.002581 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.998702 B =10845.776563 C =11431.961630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 C -0.152 4.152 4 C -0.080 4.080 5 C -0.143 4.143 6 C 0.111 3.889 7 C -0.175 4.175 8 C -0.097 4.097 9 C 0.064 3.936 10 H 0.114 0.886 11 C 0.513 3.487 12 O -0.519 6.519 13 N -0.718 5.718 14 C 0.115 3.885 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.264 1.264 25 O -0.274 6.274 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.887 27.856 4.091 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.170 4.170 4 C -0.098 4.098 5 C -0.162 4.162 6 C 0.066 3.934 7 C -0.176 4.176 8 C -0.134 4.134 9 C 0.004 3.996 10 H 0.131 0.869 11 C 0.297 3.703 12 O -0.394 6.394 13 N -0.371 5.371 14 C -0.008 4.008 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.561 4.561 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.541 5.541 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 O -0.186 6.186 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.683 27.415 3.400 28.204 hybrid contribution 0.150 -0.478 -0.286 0.577 sum 5.833 26.937 3.114 27.737 Atomic orbital electron populations 1.20830 0.90793 1.03057 1.02751 1.19123 0.96063 0.91042 0.97162 1.20934 0.94141 0.97191 1.04761 1.20857 0.94177 0.97015 0.97793 1.20253 1.00392 0.88787 1.06737 1.19623 0.91981 0.85739 0.96087 1.20512 0.93538 0.94768 1.08755 1.21723 0.96863 0.90482 1.04376 1.23223 0.86962 0.89623 0.99785 0.86861 1.19952 0.82549 0.84692 0.83119 1.90756 1.33947 1.80662 1.34052 1.46026 1.30980 1.15067 1.45042 1.21728 1.00819 0.81500 0.96724 1.21714 0.95933 0.96523 1.00918 1.19507 0.97572 0.91949 0.95913 1.21078 1.12124 0.97989 1.24883 0.90990 1.25029 0.95354 0.96683 0.96410 1.69912 1.31726 1.08668 1.43812 0.86776 0.81542 0.78955 0.82032 1.20226 1.21347 1.18897 1.86976 1.36986 1.12917 1.81761 0.90740 0.91271 0.91212 0.85445 0.85060 0.85315 0.87964 0.88462 0.76455 0.91525 0.91486 0.91985 0.91976 0.96267 0.96695 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.91 36.01 0.36 -0.38 16 2 C -0.03 -0.29 5.87 -104.77 -0.61 -0.91 16 3 C -0.15 -1.18 9.72 -39.53 -0.38 -1.56 16 4 C -0.08 -0.63 10.02 -39.68 -0.40 -1.03 16 5 C -0.14 -1.42 10.06 -39.30 -0.40 -1.82 16 6 C 0.11 1.33 7.03 -38.95 -0.27 1.05 16 7 C -0.17 -1.80 6.07 -104.10 -0.63 -2.43 16 8 C -0.10 -0.89 6.18 -26.51 -0.16 -1.05 16 9 C 0.06 0.72 4.04 -26.98 -0.11 0.61 16 10 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 11 C 0.51 7.32 7.13 -10.99 -0.08 7.24 16 12 O -0.52 -9.90 16.58 -13.42 -0.22 -10.12 16 13 N -0.72 -9.12 5.55 -60.30 -0.33 -9.45 16 14 C 0.11 1.81 5.67 -4.04 -0.02 1.79 16 15 C -0.11 -2.00 5.27 -26.73 -0.14 -2.14 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 18 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 21 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 25 O -0.27 -3.83 10.40 -39.15 -0.41 -4.23 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.40 7.57 -51.93 -0.39 0.00 16 28 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.10 0.63 7.91 -51.93 -0.41 0.22 16 33 H 0.10 0.95 7.92 -51.93 -0.41 0.54 16 34 H 0.40 3.79 8.47 -40.82 -0.35 3.44 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -34.49 344.92 -9.20 -43.69 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.14 Total: -1.29 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -3.40 Total: -13.99 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.44 Total: -36.13 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.63 Total: -14.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.49 -9.20 -43.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448910362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.196 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds