Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38389 * 120.00980 * 2 1 4 4 C 1.38239 * 119.77076 * 180.02562 * 3 2 1 5 5 C 1.37973 * 120.35064 * 0.20923 * 4 3 2 6 6 C 1.39245 * 120.23504 * 0.02562 * 5 4 3 7 7 C 1.37692 * 120.01094 * 180.02562 * 2 1 3 8 8 C 1.51649 * 132.17961 * 359.09092 * 7 2 1 9 9 C 1.54713 * 101.94437 * 195.57297 * 8 7 2 10 10 H 1.09003 * 110.74433 * 93.09541 * 9 8 7 11 11 C 1.50695 * 110.74980 * 216.26336 * 9 8 7 12 12 O 1.21275 * 120.00080 * 115.00437 * 11 9 8 13 13 N 1.34780 * 119.99949 * 295.00314 * 11 9 8 14 14 C 1.46497 * 119.99981 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.47104 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47026 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47051 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99826 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99889 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99898 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00134 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47589 * 90.00021 * 21 19 17 23 23 H 1.48502 * 109.47244 * 209.99834 * 21 19 17 24 24 H 1.48491 * 109.47388 * 329.99920 * 21 19 17 25 25 O 1.36134 * 129.90189 * 179.02469 * 6 5 4 26 26 H 1.09001 * 109.47578 * 90.00034 * 1 2 3 27 27 H 1.09003 * 109.46888 * 210.00303 * 1 2 3 28 28 H 1.09005 * 109.47269 * 329.99988 * 1 2 3 29 29 H 1.08002 * 120.11587 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.82581 * 180.19378 * 4 3 2 31 31 H 1.07999 * 119.88306 * 179.97438 * 5 4 3 32 32 H 1.08994 * 110.93505 * 313.73646 * 8 7 2 33 33 H 1.08995 * 110.93189 * 77.41816 * 8 7 2 34 34 H 0.97001 * 119.99875 * 359.97438 * 13 11 9 35 35 H 1.09005 * 109.47107 * 299.99395 * 14 13 11 36 36 H 1.08994 * 109.47197 * 59.99605 * 14 13 11 37 37 H 1.09006 * 109.46983 * 299.99368 * 15 14 13 38 38 H 1.08994 * 109.47557 * 59.99652 * 15 14 13 39 39 H 1.08996 * 109.47185 * 299.99237 * 16 15 14 40 40 H 1.08993 * 109.47546 * 59.99855 * 16 15 14 41 41 H 0.97000 * 119.99746 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1984 0.0000 4 6 3.5815 1.1926 -0.0005 5 6 4.2737 -0.0009 -0.0054 6 6 3.5848 -1.2110 -0.0104 7 6 2.1957 -1.1923 -0.0005 8 6 1.7320 -2.6361 0.0167 9 6 3.0277 -3.3839 0.4109 10 1 3.0775 -3.5275 1.4902 11 6 3.1205 -4.7059 -0.3065 12 8 4.0067 -4.8981 -1.1117 13 7 2.2184 -5.6748 -0.0531 14 6 2.3089 -6.9602 -0.7500 15 6 1.1738 -7.8741 -0.2838 16 6 1.2680 -9.2163 -1.0121 17 6 0.1503 -10.1167 -0.5524 18 1 -0.5562 -9.7668 0.1857 19 6 0.0297 -11.3872 -1.0742 20 7 -0.9453 -12.1732 -0.6726 21 14 1.2521 -11.9927 -2.3503 22 1 2.3955 -12.6502 -1.6678 23 1 0.5858 -12.9680 -3.2504 24 1 1.7468 -10.8416 -3.1472 25 8 4.0602 -2.4864 -0.0334 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 1.6612 2.1349 0.0004 30 1 4.1226 2.1273 0.0026 31 1 5.3537 0.0034 -0.0062 32 1 0.9530 -2.7861 0.7641 33 1 1.3881 -2.9464 -0.9700 34 1 1.5098 -5.5212 0.5913 35 1 2.2257 -6.7975 -1.8246 36 1 3.2676 -7.4280 -0.5265 37 1 1.2566 -8.0369 0.7909 38 1 0.2153 -7.4061 -0.5076 39 1 1.1849 -9.0533 -2.0866 40 1 2.2265 -9.6846 -0.7886 41 1 -1.0299 -13.0672 -1.0395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448910362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = -79.715593 kcal Electronic energy + Delta-G solvation = -21782.647851 eV Core-core repulsion = 18433.346642 eV Total energy + Delta-G solvation = -3349.301210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.48872 -40.53517 -38.55960 -37.02791 -35.25373 -34.41534 -33.38806 -32.19316 -30.95160 -28.92274 -27.62469 -25.67822 -24.26491 -23.07948 -22.30162 -21.85786 -21.43267 -19.05639 -18.68282 -18.29643 -17.69536 -17.22042 -16.73743 -16.51980 -16.23584 -15.68967 -15.43867 -14.82473 -14.75534 -14.67989 -14.52334 -14.29406 -13.90740 -13.83711 -13.68295 -13.45021 -13.21575 -12.88621 -12.75145 -12.71130 -12.40157 -12.08380 -11.92869 -11.79359 -11.74550 -11.60156 -11.33228 -10.96708 -10.76093 -10.22522 -9.65304 -9.16350 -8.29377 -6.32884 0.29699 0.36030 1.34205 1.36546 1.38483 1.49681 1.55803 2.36018 2.45722 2.73086 3.06595 3.24087 3.37506 3.70002 3.84573 3.93960 4.07145 4.10505 4.19058 4.23451 4.46047 4.48400 4.49528 4.60399 4.68363 4.81089 4.86000 4.87246 4.87770 4.93657 5.04014 5.26992 5.28912 5.34808 5.45253 5.48234 5.55795 5.58740 5.64663 5.66478 6.15629 6.27449 6.41285 6.75409 7.05770 7.32012 8.86853 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033246 B = 0.002581 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.998702 B =10845.776563 C =11431.961630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 C -0.151 4.151 4 C -0.079 4.079 5 C -0.159 4.159 6 C 0.075 3.925 7 C -0.186 4.186 8 C -0.090 4.090 9 C 0.066 3.934 10 H 0.143 0.857 11 C 0.514 3.486 12 O -0.574 6.574 13 N -0.702 5.702 14 C 0.126 3.874 15 C -0.099 4.099 16 C -0.014 4.014 17 C -0.528 4.528 18 H 0.040 0.960 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.249 1.249 25 O -0.309 6.309 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.420 0.580 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.020 0.980 40 H 0.019 0.981 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 30.076 4.259 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.041 4.041 3 C -0.169 4.169 4 C -0.097 4.097 5 C -0.178 4.178 6 C 0.030 3.970 7 C -0.186 4.186 8 C -0.127 4.127 9 C 0.007 3.993 10 H 0.161 0.839 11 C 0.300 3.700 12 O -0.453 6.453 13 N -0.355 5.355 14 C 0.002 3.998 15 C -0.137 4.137 16 C -0.052 4.052 17 C -0.566 4.566 18 H 0.059 0.941 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.769 3.231 22 H -0.194 1.194 23 H -0.211 1.211 24 H -0.172 1.172 25 O -0.223 6.223 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.106 0.894 34 H 0.258 0.742 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.545 29.666 3.601 30.394 hybrid contribution 0.127 -1.072 -0.281 1.116 sum 5.673 28.594 3.320 29.340 Atomic orbital electron populations 1.20887 0.88994 1.04230 1.03234 1.19500 0.97477 0.90746 0.96426 1.21361 0.94251 0.98091 1.03155 1.21225 0.94644 0.97278 0.96550 1.20547 1.00904 0.89145 1.07175 1.19979 0.93223 0.85413 0.98370 1.20711 0.92993 0.95765 1.09169 1.21748 0.96455 0.89574 1.04905 1.23332 0.87705 0.87670 1.00598 0.83949 1.20522 0.81494 0.85703 0.82274 1.90728 1.36187 1.81781 1.36574 1.45769 1.31221 1.13761 1.44799 1.21378 0.99480 0.82410 0.96483 1.21481 0.97076 0.94455 1.00676 1.19482 0.95690 0.93648 0.96387 1.21457 1.12640 0.98775 1.23761 0.94138 1.25961 0.97320 0.97109 0.98830 1.70055 1.33967 1.09284 1.45736 0.85729 0.79114 0.78817 0.79437 1.19364 1.21111 1.17212 1.86912 1.38483 1.14245 1.82656 0.90475 0.90686 0.89550 0.82685 0.82262 0.85112 0.84580 0.89372 0.74229 0.92322 0.92248 0.91304 0.91225 0.96151 0.96304 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.91 71.24 0.71 -0.40 16 2 C -0.04 -0.62 5.87 -19.96 -0.12 -0.74 16 3 C -0.15 -1.92 9.72 22.31 0.22 -1.70 16 4 C -0.08 -1.09 10.02 22.21 0.22 -0.87 16 5 C -0.16 -3.10 10.06 22.45 0.23 -2.87 16 6 C 0.07 1.77 7.03 22.68 0.16 1.93 16 7 C -0.19 -3.57 6.07 -19.53 -0.12 -3.68 16 8 C -0.09 -1.48 6.18 30.73 0.19 -1.29 16 9 C 0.07 1.42 4.04 30.43 0.12 1.54 16 10 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 11 C 0.51 14.38 7.13 87.65 0.63 15.01 16 12 O -0.57 -22.26 16.58 15.13 0.25 -22.01 16 13 N -0.70 -16.74 5.55 -463.07 -2.57 -19.31 16 14 C 0.13 3.82 5.67 86.38 0.49 4.31 16 15 C -0.10 -3.37 5.27 30.59 0.16 -3.21 16 16 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 17 C -0.53 -29.39 9.66 25.60 0.25 -29.14 16 18 H 0.04 2.44 7.99 -2.91 -0.02 2.41 16 19 C 0.00 0.27 5.47 84.65 0.46 0.73 16 20 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 21 Si 0.95 44.11 27.47 68.60 1.88 45.99 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 25 O -0.31 -8.79 10.40 -76.93 -0.80 -9.59 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.62 7.57 -2.39 -0.02 0.61 16 28 H 0.09 0.53 8.09 -2.38 -0.02 0.51 16 29 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 30 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 32 H 0.14 1.23 7.91 -2.39 -0.02 1.22 16 33 H 0.09 1.61 7.92 -2.39 -0.02 1.59 16 34 H 0.42 6.87 8.47 -92.71 -0.79 6.09 16 35 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 40 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 41 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -76.97 344.92 2.97 -74.00 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.19 Total: 10.26 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 3.72 Total: -20.88 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -2.27 Total: -77.77 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.55 Total: -31.60 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Total: -76.97 2.97 -74.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448910362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.715 kcal (2) G-P(sol) polarization free energy of solvation -76.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds