Wall clock time and date at job start Tue Mar 31 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37974 * 119.87744 * 2 1 4 4 C 1.38242 * 120.34780 * 180.28088 * 3 2 1 5 5 C 1.38398 * 119.76982 * 359.65540 * 4 3 2 6 6 C 1.37699 * 119.97242 * 0.17196 * 5 4 3 7 7 C 1.38919 * 120.79256 * 359.78148 * 6 5 4 8 8 O 1.36136 * 111.23680 * 180.68612 * 7 6 5 9 9 C 1.43765 * 109.25387 * 341.09701 * 8 7 6 10 10 H 1.08994 * 110.74819 * 269.37044 * 9 8 7 11 11 C 1.50696 * 110.74857 * 146.02110 * 9 8 7 12 12 O 1.21281 * 119.99818 * 1.62653 * 11 9 8 13 13 N 1.34776 * 120.00096 * 181.62883 * 11 9 8 14 14 C 1.46505 * 119.99775 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.46864 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.46989 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47111 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00000 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99912 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00018 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47124 * 59.99772 * 21 19 17 23 23 H 1.48496 * 109.47315 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46891 * 300.00226 * 21 19 17 25 25 C 1.51646 * 132.17813 * 179.45449 * 6 5 4 26 26 H 1.09000 * 109.47335 * 270.27879 * 1 2 3 27 27 H 1.08995 * 109.47190 * 30.28169 * 1 2 3 28 28 H 1.09005 * 109.47122 * 150.27812 * 1 2 3 29 29 H 1.07999 * 119.82533 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.11830 * 179.97438 * 4 3 2 31 31 H 1.07991 * 120.01197 * 180.18528 * 5 4 3 32 32 H 0.96998 * 120.00069 * 359.97438 * 13 11 9 33 33 H 1.08996 * 109.47105 * 299.99504 * 14 13 11 34 34 H 1.09003 * 109.46909 * 60.00251 * 14 13 11 35 35 H 1.08995 * 109.47103 * 300.00393 * 15 14 13 36 36 H 1.09001 * 109.47046 * 60.00089 * 15 14 13 37 37 H 1.09004 * 109.47522 * 300.00112 * 16 15 14 38 38 H 1.09001 * 109.47235 * 60.00106 * 16 15 14 39 39 H 0.97000 * 119.99872 * 180.02562 * 20 19 17 40 40 H 1.08998 * 110.93785 * 313.92829 * 25 6 5 41 41 H 1.09004 * 110.94063 * 77.57698 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2077 -0.0058 5 6 4.2737 0.0121 -0.0045 6 6 3.5897 -1.1830 -0.0009 7 6 2.2007 -1.2074 0.0059 8 8 1.7300 -2.4846 0.0236 9 6 2.7689 -3.3788 -0.4102 10 1 2.7266 -3.5251 -1.4894 11 6 2.6747 -4.6975 0.3130 12 8 1.7826 -4.8884 1.1123 13 7 3.5817 -5.6647 0.0717 14 6 3.4903 -6.9466 0.7752 15 6 4.6310 -7.8597 0.3215 16 6 4.5353 -9.1986 1.0557 17 6 5.6592 -10.0978 0.6092 18 1 6.3708 -9.7491 -0.1244 19 6 5.7795 -11.3654 1.1382 20 7 4.9132 -11.7899 2.0321 21 14 7.1730 -12.4798 0.5854 22 1 8.4747 -11.8362 0.8964 23 1 7.0808 -13.7789 1.2988 24 1 7.0718 -12.7099 -0.8782 25 6 4.0591 -2.6249 -0.0094 26 1 -0.3634 0.0050 1.0276 27 1 -0.3633 0.8874 -0.5182 28 1 -0.3633 -0.8925 -0.5095 29 1 1.6495 2.1289 0.0004 30 1 4.1110 2.1463 -0.0062 31 1 5.3536 0.0164 -0.0060 32 1 4.2949 -5.5122 -0.5678 33 1 3.5651 -6.7776 1.8494 34 1 2.5347 -7.4188 0.5473 35 1 4.5559 -8.0286 -0.7527 36 1 5.5868 -7.3877 0.5490 37 1 4.6102 -9.0301 2.1300 38 1 3.5795 -9.6705 0.8277 39 1 4.9981 -12.6815 2.4045 40 1 4.8440 -2.7747 -0.7508 41 1 4.3978 -2.9302 0.9807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449843493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:09 Heat of formation + Delta-G solvation = -61.288201 kcal Electronic energy + Delta-G solvation = -21710.189955 eV Core-core repulsion = 18361.687817 eV Total energy + Delta-G solvation = -3348.502138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.64094 -39.38301 -37.64904 -35.47794 -33.94743 -33.34642 -31.69813 -31.09156 -29.87602 -27.05483 -26.81912 -24.63978 -22.94978 -22.32713 -21.13549 -20.85184 -20.09829 -17.87527 -17.39203 -17.05513 -16.39195 -16.07734 -15.40983 -15.27899 -14.76121 -14.48588 -14.30576 -13.95484 -13.81260 -13.63938 -13.37383 -13.15733 -12.77920 -12.54552 -12.31679 -12.15213 -11.88984 -11.77830 -11.75016 -11.39254 -11.07674 -10.91233 -10.78640 -10.65692 -9.94281 -9.91794 -9.43077 -9.16876 -8.99541 -8.92262 -8.39833 -8.35965 -6.04444 -4.07964 0.96914 1.07517 2.46931 2.59463 3.30009 3.30813 3.35117 3.36702 3.51994 4.04933 4.21359 4.41758 4.49300 4.58988 4.66180 4.76670 4.91195 4.99347 5.15855 5.28228 5.31218 5.37865 5.40842 5.44013 5.60517 5.63021 5.70478 5.93807 6.05248 6.08841 6.10734 6.20774 6.30316 6.34545 6.52993 6.73797 6.90162 6.93878 7.52560 7.59614 7.71756 7.93653 8.19678 8.34536 8.98423 9.56336 11.06760 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039541 B = 0.002395 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.949665 B =11686.810250 C =12217.865661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.074 4.074 6 C -0.170 4.170 7 C 0.107 3.893 8 O -0.271 6.271 9 C 0.063 3.937 10 H 0.113 0.887 11 C 0.512 3.488 12 O -0.519 6.519 13 N -0.719 5.719 14 C 0.117 3.883 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.099 4.099 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.400 0.600 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.102 0.898 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 26.651 -7.153 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.106 4.106 4 C -0.164 4.164 5 C -0.092 4.092 6 C -0.171 4.171 7 C 0.061 3.939 8 O -0.184 6.184 9 C 0.004 3.996 10 H 0.131 0.869 11 C 0.296 3.704 12 O -0.393 6.393 13 N -0.371 5.371 14 C -0.005 4.005 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.137 4.137 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.769 26.231 -6.377 27.257 hybrid contribution 1.311 -0.699 -0.581 1.595 sum -2.459 25.532 -6.959 26.577 Atomic orbital electron populations 1.20702 0.90515 1.02877 1.02626 1.19149 0.96513 0.89392 1.05209 1.20791 0.94239 0.96498 0.99054 1.21015 0.94099 0.97748 1.03560 1.20292 0.99879 0.90421 0.98573 1.20706 0.93631 0.95233 1.07526 1.19447 0.91863 0.85467 0.97121 1.86953 1.36562 1.12790 1.82070 1.23229 0.86828 0.89768 0.99822 0.86939 1.19943 0.82703 0.84629 0.83153 1.90761 1.33728 1.80490 1.34359 1.46080 1.30337 1.15479 1.45231 1.21725 1.00910 0.81305 0.96584 1.21898 0.95470 0.97694 1.00775 1.19029 0.97540 0.89250 0.95570 1.21151 1.12074 0.98858 1.24145 0.92680 1.25036 0.96257 0.98123 0.95050 1.69954 1.35897 1.18656 1.28712 0.86632 0.82548 0.79877 0.78777 1.20241 1.21259 1.20230 1.21758 0.96993 0.90433 1.04467 0.91130 0.91477 0.91204 0.85153 0.85402 0.85627 0.76632 0.91511 0.91474 0.92604 0.92618 0.96244 0.96227 0.92824 0.87920 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.98 36.01 0.36 -0.62 16 2 C -0.10 -1.06 5.90 -104.34 -0.62 -1.68 16 3 C -0.09 -0.73 9.66 -39.68 -0.38 -1.11 16 4 C -0.15 -1.14 10.07 -39.52 -0.40 -1.54 16 5 C -0.07 -0.64 10.03 -39.72 -0.40 -1.03 16 6 C -0.17 -1.79 6.27 -104.10 -0.65 -2.44 16 7 C 0.11 1.30 6.73 -38.95 -0.26 1.04 16 8 O -0.27 -3.85 10.26 -39.24 -0.40 -4.25 16 9 C 0.06 0.73 4.05 -26.98 -0.11 0.62 16 10 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 11 C 0.51 7.60 7.13 -10.99 -0.08 7.53 16 12 O -0.52 -10.23 16.57 -13.51 -0.22 -10.45 16 13 N -0.72 -9.64 5.55 -60.29 -0.33 -9.98 16 14 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 15 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.10 -0.93 6.63 -26.52 -0.18 -1.11 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.07 0.68 8.01 -51.93 -0.42 0.26 16 29 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 30 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.99 7.92 -51.93 -0.41 0.57 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -33.99 349.45 -9.61 -43.60 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.21 Total: -1.02 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.43 Total: -13.53 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.40 Total: -35.86 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.63 Total: -14.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.99 -9.61 -43.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449843493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.686 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds