Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37974 * 119.87744 * 2 1 4 4 C 1.38242 * 120.34780 * 180.28088 * 3 2 1 5 5 C 1.38398 * 119.76982 * 359.65540 * 4 3 2 6 6 C 1.37699 * 119.97242 * 0.17196 * 5 4 3 7 7 C 1.38919 * 120.79256 * 359.78148 * 6 5 4 8 8 O 1.36136 * 111.23680 * 180.68612 * 7 6 5 9 9 C 1.43765 * 109.25387 * 341.09701 * 8 7 6 10 10 H 1.08994 * 110.74819 * 269.37044 * 9 8 7 11 11 C 1.50696 * 110.74857 * 146.02110 * 9 8 7 12 12 O 1.21281 * 119.99818 * 1.62653 * 11 9 8 13 13 N 1.34776 * 120.00096 * 181.62883 * 11 9 8 14 14 C 1.46505 * 119.99775 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.46864 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.46989 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47111 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00000 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99912 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00018 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47124 * 59.99772 * 21 19 17 23 23 H 1.48496 * 109.47315 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46891 * 300.00226 * 21 19 17 25 25 C 1.51646 * 132.17813 * 179.45449 * 6 5 4 26 26 H 1.09000 * 109.47335 * 270.27879 * 1 2 3 27 27 H 1.08995 * 109.47190 * 30.28169 * 1 2 3 28 28 H 1.09005 * 109.47122 * 150.27812 * 1 2 3 29 29 H 1.07999 * 119.82533 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.11830 * 179.97438 * 4 3 2 31 31 H 1.07991 * 120.01197 * 180.18528 * 5 4 3 32 32 H 0.96998 * 120.00069 * 359.97438 * 13 11 9 33 33 H 1.08996 * 109.47105 * 299.99504 * 14 13 11 34 34 H 1.09003 * 109.46909 * 60.00251 * 14 13 11 35 35 H 1.08995 * 109.47103 * 300.00393 * 15 14 13 36 36 H 1.09001 * 109.47046 * 60.00089 * 15 14 13 37 37 H 1.09004 * 109.47522 * 300.00112 * 16 15 14 38 38 H 1.09001 * 109.47235 * 60.00106 * 16 15 14 39 39 H 0.97000 * 119.99872 * 180.02562 * 20 19 17 40 40 H 1.08998 * 110.93785 * 313.92829 * 25 6 5 41 41 H 1.09004 * 110.94063 * 77.57698 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2077 -0.0058 5 6 4.2737 0.0121 -0.0045 6 6 3.5897 -1.1830 -0.0009 7 6 2.2007 -1.2074 0.0059 8 8 1.7300 -2.4846 0.0236 9 6 2.7689 -3.3788 -0.4102 10 1 2.7266 -3.5251 -1.4894 11 6 2.6747 -4.6975 0.3130 12 8 1.7826 -4.8884 1.1123 13 7 3.5817 -5.6647 0.0717 14 6 3.4903 -6.9466 0.7752 15 6 4.6310 -7.8597 0.3215 16 6 4.5353 -9.1986 1.0557 17 6 5.6592 -10.0978 0.6092 18 1 6.3708 -9.7491 -0.1244 19 6 5.7795 -11.3654 1.1382 20 7 4.9132 -11.7899 2.0321 21 14 7.1730 -12.4798 0.5854 22 1 8.4747 -11.8362 0.8964 23 1 7.0808 -13.7789 1.2988 24 1 7.0718 -12.7099 -0.8782 25 6 4.0591 -2.6249 -0.0094 26 1 -0.3634 0.0050 1.0276 27 1 -0.3633 0.8874 -0.5182 28 1 -0.3633 -0.8925 -0.5095 29 1 1.6495 2.1289 0.0004 30 1 4.1110 2.1463 -0.0062 31 1 5.3536 0.0164 -0.0060 32 1 4.2949 -5.5122 -0.5678 33 1 3.5651 -6.7776 1.8494 34 1 2.5347 -7.4188 0.5473 35 1 4.5559 -8.0286 -0.7527 36 1 5.5868 -7.3877 0.5490 37 1 4.6102 -9.0301 2.1300 38 1 3.5795 -9.6705 0.8277 39 1 4.9981 -12.6815 2.4045 40 1 4.8440 -2.7747 -0.7508 41 1 4.3978 -2.9302 0.9807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449843493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = -82.248319 kcal Electronic energy + Delta-G solvation = -21711.098853 eV Core-core repulsion = 18361.687817 eV Total energy + Delta-G solvation = -3349.411037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -42.47811 -40.53580 -38.44879 -36.99913 -35.30108 -34.58583 -33.20742 -32.02607 -30.84676 -28.51322 -27.72059 -25.83358 -24.47537 -23.07493 -22.37042 -21.84335 -21.44917 -18.78743 -18.65881 -18.19874 -17.83465 -17.14209 -16.63783 -16.47929 -16.25338 -15.77325 -15.44938 -14.87140 -14.74679 -14.48187 -14.26829 -14.16929 -13.91858 -13.79185 -13.62853 -13.53171 -13.19126 -12.85188 -12.71066 -12.56472 -12.42962 -12.40026 -12.14825 -11.75151 -11.67827 -11.59314 -11.26527 -10.92196 -10.54684 -10.23587 -9.65353 -9.10952 -8.19277 -6.30933 0.30323 0.37859 1.34717 1.42142 1.45188 1.52759 1.56844 2.41237 2.47813 2.73826 3.14580 3.24694 3.38081 3.73008 3.84055 3.94551 4.06972 4.13515 4.19375 4.30057 4.40485 4.50174 4.53092 4.62812 4.70007 4.74509 4.78493 4.92518 4.92967 4.97032 5.16697 5.25961 5.32461 5.40638 5.46336 5.51736 5.55207 5.65179 5.70303 5.84204 6.16797 6.21711 6.42533 6.86791 7.07213 7.38808 8.92642 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039541 B = 0.002395 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.949665 B =11686.810250 C =12217.865661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.141 4.141 5 C -0.078 4.078 6 C -0.180 4.180 7 C 0.068 3.932 8 O -0.307 6.307 9 C 0.067 3.933 10 H 0.144 0.856 11 C 0.512 3.488 12 O -0.576 6.576 13 N -0.700 5.700 14 C 0.129 3.871 15 C -0.100 4.100 16 C 0.022 3.978 17 C -0.540 4.540 18 H 0.069 0.931 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.092 4.092 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.421 0.579 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.073 0.927 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.263 0.737 40 H 0.140 0.860 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 28.840 -9.102 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 C -0.107 4.107 4 C -0.159 4.159 5 C -0.096 4.096 6 C -0.181 4.181 7 C 0.023 3.977 8 O -0.221 6.221 9 C 0.007 3.993 10 H 0.161 0.839 11 C 0.298 3.702 12 O -0.455 6.455 13 N -0.354 5.354 14 C 0.006 3.994 15 C -0.138 4.138 16 C -0.016 4.016 17 C -0.578 4.578 18 H 0.087 0.913 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.190 1.190 25 C -0.129 4.129 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.175 0.825 30 H 0.176 0.824 31 H 0.168 0.832 32 H 0.259 0.741 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.010 0.990 38 H 0.009 0.991 39 H 0.071 0.929 40 H 0.158 0.842 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.257 28.452 -8.370 29.684 hybrid contribution 0.505 -1.291 0.052 1.388 sum -0.752 27.161 -8.318 28.416 Atomic orbital electron populations 1.20704 0.90191 1.03197 1.02499 1.19513 0.97223 0.89783 1.05574 1.21160 0.94891 0.96643 0.98025 1.21459 0.94041 0.98791 1.01595 1.20667 1.01242 0.89941 0.97726 1.20932 0.93040 0.96283 1.07870 1.19825 0.93179 0.85113 0.99569 1.86893 1.38020 1.14172 1.82983 1.23323 0.87757 0.87600 1.00592 0.83876 1.20615 0.81542 0.85759 0.82274 1.90734 1.36076 1.81685 1.37012 1.45759 1.30738 1.13899 1.44962 1.21308 0.99487 0.82624 0.96030 1.21596 0.96774 0.94706 1.00727 1.18955 0.95664 0.92310 0.94646 1.21657 1.12650 0.99407 1.24113 0.91294 1.26048 0.99042 1.00092 0.95079 1.70112 1.38114 1.19167 1.30255 0.85460 0.79252 0.77399 0.78688 1.18930 1.21366 1.18957 1.21791 0.96552 0.89510 1.05008 0.91504 0.89023 0.92948 0.82516 0.82360 0.83154 0.74118 0.93119 0.93125 0.90971 0.90880 0.99047 0.99067 0.92852 0.84175 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.98 71.24 0.71 -1.23 16 2 C -0.12 -2.43 5.90 -19.68 -0.12 -2.54 16 3 C -0.09 -1.27 9.66 22.21 0.21 -1.06 16 4 C -0.14 -1.73 10.07 22.31 0.22 -1.51 16 5 C -0.08 -1.12 10.03 22.18 0.22 -0.89 16 6 C -0.18 -3.49 6.27 -19.53 -0.12 -3.62 16 7 C 0.07 1.65 6.73 22.68 0.15 1.80 16 8 O -0.31 -8.97 10.26 -76.87 -0.79 -9.76 16 9 C 0.07 1.49 4.05 30.43 0.12 1.61 16 10 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 11 C 0.51 15.31 7.13 87.66 0.63 15.94 16 12 O -0.58 -23.85 16.57 15.20 0.25 -23.60 16 13 N -0.70 -18.15 5.55 -463.05 -2.57 -20.72 16 14 C 0.13 4.44 5.67 86.38 0.49 4.93 16 15 C -0.10 -3.68 5.27 30.59 0.16 -3.52 16 16 C 0.02 1.12 4.97 29.85 0.15 1.27 16 17 C -0.54 -29.65 9.11 25.60 0.23 -29.41 16 18 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 19 C -0.01 -0.29 5.46 84.66 0.46 0.18 16 20 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 21 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.09 -1.54 6.63 30.73 0.20 -1.34 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 28 H 0.05 1.08 8.01 -2.38 -0.02 1.06 16 29 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 30 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.42 7.34 8.47 -92.71 -0.79 6.56 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.66 7.92 -2.38 -0.02 1.64 16 Total: -1.00 -77.45 349.45 3.18 -74.27 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.24 Total: 10.67 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 3.73 Total: -19.39 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -2.28 Total: -77.53 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.54 Total: -33.36 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -77.45 3.18 -74.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449843493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.977 kcal (2) G-P(sol) polarization free energy of solvation -77.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds