Wall clock time and date at job start Tue Mar 31 2020 07:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47082 * 2 1 4 4 C 1.50702 * 109.47234 * 240.00233 * 2 1 3 5 5 H 1.08001 * 119.99713 * 240.83938 * 4 2 1 6 6 C 1.37874 * 119.99970 * 60.83461 * 4 2 1 7 7 N 1.31519 * 119.99575 * 194.58086 * 6 4 2 8 8 Si 1.86791 * 120.00263 * 14.58017 * 6 4 2 9 9 H 1.48498 * 109.47289 * 84.45252 * 8 6 4 10 10 H 1.48497 * 109.47266 * 204.45613 * 8 6 4 11 11 H 1.48504 * 109.47173 * 324.45722 * 8 6 4 12 12 C 1.53000 * 109.47194 * 119.99775 * 2 1 3 13 13 S 1.81396 * 109.47282 * 299.99937 * 12 2 1 14 14 O 1.42099 * 110.54575 * 291.62319 * 13 12 2 15 15 O 1.42103 * 110.54361 * 68.37419 * 13 12 2 16 16 N 1.65604 * 104.44950 * 179.97438 * 13 12 2 17 17 C 1.46494 * 119.99573 * 65.00670 * 16 13 12 18 18 C 1.53007 * 109.47059 * 164.99896 * 17 16 13 19 19 H 1.08998 * 115.54851 * 29.32817 * 18 17 16 20 20 C 1.52996 * 117.49497 * 243.61741 * 18 17 16 21 21 C 1.52999 * 60.00120 * 252.51010 * 20 18 17 22 22 C 1.53008 * 117.50153 * 252.51588 * 21 20 18 23 23 C 1.52998 * 117.49977 * 107.49303 * 21 20 18 24 24 H 1.09000 * 109.47079 * 310.23672 * 1 2 3 25 25 H 1.09001 * 109.46932 * 70.23107 * 1 2 3 26 26 H 1.08996 * 109.46946 * 190.23339 * 1 2 3 27 27 H 1.09000 * 109.46683 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47130 * 299.99549 * 3 2 1 29 29 H 1.08996 * 109.46935 * 60.00212 * 3 2 1 30 30 H 0.97001 * 119.99613 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47039 * 179.97438 * 12 2 1 32 32 H 1.09007 * 109.46994 * 60.00279 * 12 2 1 33 33 H 0.96998 * 119.99806 * 245.00013 * 16 13 12 34 34 H 1.09005 * 109.47077 * 284.99256 * 17 16 13 35 35 H 1.09000 * 109.48042 * 44.99779 * 17 16 13 36 36 H 1.08995 * 117.50622 * 0.02562 * 20 18 17 37 37 H 1.09007 * 117.49523 * 145.02470 * 20 18 17 38 38 H 1.09000 * 109.47007 * 128.62015 * 22 21 20 39 39 H 1.09005 * 109.46637 * 248.62186 * 22 21 20 40 40 H 1.08995 * 109.46779 * 8.61862 * 22 21 20 41 41 H 1.09001 * 109.47182 * 351.37630 * 23 21 20 42 42 H 1.08994 * 109.47680 * 111.37863 * 23 21 20 43 43 H 1.09006 * 109.47144 * 231.37951 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6420 -1.5963 -1.1314 6 6 1.7135 -0.2293 -2.4826 7 7 1.8969 -0.9847 -3.5435 8 14 1.0212 1.4952 -2.6723 9 1 2.1370 2.4737 -2.7240 10 1 0.2328 1.5767 -3.9280 11 1 0.1434 1.8062 -1.5156 12 6 2.0400 -0.7212 1.2493 13 16 1.4354 0.1339 2.7304 14 8 2.0480 1.4101 2.8544 15 8 0.0280 -0.0182 2.8544 16 7 2.0531 -0.7408 3.9936 17 6 3.5014 -0.7979 4.2059 18 6 3.7904 -1.3344 5.6094 19 1 3.0450 -2.0193 6.0135 20 6 4.4965 -0.3981 6.5920 21 6 5.2531 -1.5809 5.9842 22 6 5.5575 -2.7697 6.8981 23 6 6.3150 -1.2722 4.9269 24 1 -0.3633 0.6638 0.7845 25 1 -0.3633 0.3476 -0.9671 26 1 -0.3633 -1.0113 0.1826 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6723 -0.6464 -4.4244 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7489 1.2493 33 1 1.4559 -1.2151 4.5929 34 1 3.9515 -1.4585 3.4648 35 1 3.9233 0.2020 4.1053 36 1 4.7549 0.6002 6.2388 37 1 4.2157 -0.4668 7.6430 38 1 5.2236 -3.6905 6.4198 39 1 6.6311 -2.8230 7.0794 40 1 5.0348 -2.6424 7.8460 41 1 6.2611 -0.2181 4.6548 42 1 7.3035 -1.4934 5.3292 43 1 6.1369 -1.8851 4.0432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451186403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:20 Heat of formation + Delta-G solvation = -45.413845 kcal Electronic energy + Delta-G solvation = -22244.456509 eV Core-core repulsion = 19032.086686 eV Total energy + Delta-G solvation = -3212.369823 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.08626 -36.72518 -36.67348 -35.48047 -34.64934 -31.94716 -29.59338 -27.92646 -27.41802 -26.37442 -25.94256 -25.00227 -21.50741 -19.99225 -19.17994 -18.61728 -17.31978 -16.48077 -16.14382 -15.57647 -15.43295 -14.94948 -14.62944 -14.51219 -13.91474 -13.63249 -13.37789 -13.14449 -12.90299 -12.78983 -12.54473 -12.44130 -12.33535 -12.18939 -11.77627 -11.59009 -11.55642 -11.49022 -11.21286 -11.08100 -10.99655 -10.78079 -10.35866 -10.16789 -10.05559 -9.96741 -9.76702 -9.33580 -8.99061 -8.74214 -8.47111 -6.19504 -4.16779 0.71620 3.03980 3.25542 3.34926 3.38978 3.47865 4.14321 4.34201 4.35222 4.47966 4.59699 4.67591 4.82749 4.97444 5.10187 5.20802 5.34689 5.38676 5.44422 5.53338 5.55690 5.61652 5.66164 5.68770 5.73149 5.84747 5.93085 5.99581 6.05019 6.11376 6.21668 6.32404 6.44634 6.49530 6.70426 6.87491 7.06195 7.13777 7.31678 7.62618 8.38734 8.83209 9.44615 10.93035 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025451 B = 0.004389 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.883810 B = 6377.350319 C = 6852.949476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.054 3.946 3 C -0.181 4.181 4 C -0.508 4.508 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.281 1.281 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.575 4.575 13 S 2.592 3.408 14 O -0.965 6.965 15 O -0.964 6.964 16 N -1.126 6.126 17 C 0.145 3.855 18 C -0.152 4.152 19 H 0.110 0.890 20 C -0.170 4.170 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.123 4.123 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.266 0.734 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.412 0.588 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.928 -1.894 18.841 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.051 3.949 3 C -0.238 4.238 4 C -0.546 4.546 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.706 3.294 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.708 4.708 13 S 2.689 3.311 14 O -0.955 6.955 15 O -0.955 6.955 16 N -0.884 5.884 17 C 0.019 3.981 18 C -0.171 4.171 19 H 0.128 0.872 20 C -0.207 4.207 21 C -0.123 4.123 22 C -0.172 4.172 23 C -0.180 4.180 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.246 0.754 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.507 -1.040 18.638 19.462 hybrid contribution -0.181 0.121 -0.294 0.366 sum 5.326 -0.918 18.343 19.123 Atomic orbital electron populations 1.22676 0.97010 1.01342 1.01743 1.18235 0.92528 0.91720 0.92406 1.22816 1.02334 0.97863 1.00790 1.20651 1.33904 1.12553 0.87530 0.90413 1.24964 0.94553 0.97298 0.95793 1.69940 1.47926 1.35773 0.98901 0.87438 0.79809 0.85679 0.76511 1.20812 1.22928 1.17177 1.30377 1.11754 1.13093 1.15580 1.05602 0.74429 0.75279 0.75788 1.93539 1.78163 1.38228 1.85533 1.93568 1.29410 1.86671 1.85807 1.55742 1.14084 1.71202 1.47329 1.20849 0.80204 1.01468 0.95596 1.22589 0.95628 1.03269 0.95662 0.87186 1.23388 1.03519 0.95250 0.98566 1.21629 0.92538 0.97928 1.00243 1.21364 1.01706 0.96202 0.97944 1.21421 0.97097 1.01962 0.97490 0.94434 0.91459 0.92337 0.91807 0.93029 0.93165 0.92427 0.85809 0.85434 0.75431 0.91240 0.90111 0.88350 0.88785 0.92079 0.92020 0.92542 0.91979 0.91990 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 6.95 37.16 0.26 -3.59 16 2 C 0.05 1.23 0.52 -155.66 -0.08 1.15 16 3 C -0.18 -4.06 7.22 37.16 0.27 -3.79 16 4 C -0.51 -13.61 8.62 -34.44 -0.30 -13.91 16 5 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 6 C 0.08 2.16 5.31 -17.82 -0.09 2.07 16 7 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 8 Si 0.87 21.54 22.79 -169.99 -3.87 17.67 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.25 -5.69 4.67 56.52 0.26 -5.43 16 12 C -0.57 -10.44 4.99 37.16 0.19 -10.25 16 13 S 2.59 44.33 4.50 -107.50 -0.48 43.85 16 14 O -0.96 -18.70 15.12 -57.54 -0.87 -19.57 16 15 O -0.96 -18.82 15.93 -57.54 -0.92 -19.74 16 16 N -1.13 -14.23 5.89 -10.61 -0.06 -14.29 16 17 C 0.15 1.62 5.49 -4.04 -0.02 1.60 16 18 C -0.15 -1.41 5.62 -90.62 -0.51 -1.92 16 19 H 0.11 0.93 7.98 -51.93 -0.41 0.51 16 20 C -0.17 -1.48 9.47 -26.73 -0.25 -1.73 16 21 C -0.12 -1.02 2.70 -154.51 -0.42 -1.43 16 22 C -0.12 -0.80 9.85 37.16 0.37 -0.43 16 23 C -0.12 -0.99 8.86 37.16 0.33 -0.66 16 24 H 0.04 0.80 6.21 -51.93 -0.32 0.47 16 25 H 0.07 1.56 4.32 -51.93 -0.22 1.34 16 26 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.05 1.20 2.28 -51.93 -0.12 1.08 16 29 H 0.05 1.06 5.46 -51.93 -0.28 0.77 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 32 H 0.13 2.12 8.14 -51.92 -0.42 1.70 16 33 H 0.41 4.39 8.51 -34.47 -0.29 4.10 16 34 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 35 H 0.08 0.95 7.43 -51.93 -0.39 0.57 16 36 H 0.10 0.89 7.94 -51.93 -0.41 0.47 16 37 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.39 7.92 -51.93 -0.41 -0.03 16 40 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 41 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 42 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 43 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -32.71 335.04 -7.78 -40.49 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.13 Total: 5.10 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: -0.27 Total: -32.92 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.71 Total: -39.94 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.79 Total: -39.31 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -3.87 Total: 17.67 kcal Atomic # 16 Polarization: 44.33 SS G_CDS: -0.48 Total: 43.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.71 -7.78 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451186403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.921 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds