Wall clock time and date at job start Tue Mar 31 2020 07:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47082 * 2 1 4 4 C 1.50702 * 109.47234 * 240.00233 * 2 1 3 5 5 H 1.08001 * 119.99713 * 240.83938 * 4 2 1 6 6 C 1.37874 * 119.99970 * 60.83461 * 4 2 1 7 7 N 1.31519 * 119.99575 * 194.58086 * 6 4 2 8 8 Si 1.86791 * 120.00263 * 14.58017 * 6 4 2 9 9 H 1.48498 * 109.47289 * 84.45252 * 8 6 4 10 10 H 1.48497 * 109.47266 * 204.45613 * 8 6 4 11 11 H 1.48504 * 109.47173 * 324.45722 * 8 6 4 12 12 C 1.53000 * 109.47194 * 119.99775 * 2 1 3 13 13 S 1.81396 * 109.47282 * 299.99937 * 12 2 1 14 14 O 1.42099 * 110.54575 * 291.62319 * 13 12 2 15 15 O 1.42103 * 110.54361 * 68.37419 * 13 12 2 16 16 N 1.65604 * 104.44950 * 179.97438 * 13 12 2 17 17 C 1.46494 * 119.99573 * 65.00670 * 16 13 12 18 18 C 1.53007 * 109.47059 * 164.99896 * 17 16 13 19 19 H 1.08998 * 115.54851 * 29.32817 * 18 17 16 20 20 C 1.52996 * 117.49497 * 243.61741 * 18 17 16 21 21 C 1.52999 * 60.00120 * 252.51010 * 20 18 17 22 22 C 1.53008 * 117.50153 * 252.51588 * 21 20 18 23 23 C 1.52998 * 117.49977 * 107.49303 * 21 20 18 24 24 H 1.09000 * 109.47079 * 310.23672 * 1 2 3 25 25 H 1.09001 * 109.46932 * 70.23107 * 1 2 3 26 26 H 1.08996 * 109.46946 * 190.23339 * 1 2 3 27 27 H 1.09000 * 109.46683 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47130 * 299.99549 * 3 2 1 29 29 H 1.08996 * 109.46935 * 60.00212 * 3 2 1 30 30 H 0.97001 * 119.99613 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47039 * 179.97438 * 12 2 1 32 32 H 1.09007 * 109.46994 * 60.00279 * 12 2 1 33 33 H 0.96998 * 119.99806 * 245.00013 * 16 13 12 34 34 H 1.09005 * 109.47077 * 284.99256 * 17 16 13 35 35 H 1.09000 * 109.48042 * 44.99779 * 17 16 13 36 36 H 1.08995 * 117.50622 * 0.02562 * 20 18 17 37 37 H 1.09007 * 117.49523 * 145.02470 * 20 18 17 38 38 H 1.09000 * 109.47007 * 128.62015 * 22 21 20 39 39 H 1.09005 * 109.46637 * 248.62186 * 22 21 20 40 40 H 1.08995 * 109.46779 * 8.61862 * 22 21 20 41 41 H 1.09001 * 109.47182 * 351.37630 * 23 21 20 42 42 H 1.08994 * 109.47680 * 111.37863 * 23 21 20 43 43 H 1.09006 * 109.47144 * 231.37951 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6420 -1.5963 -1.1314 6 6 1.7135 -0.2293 -2.4826 7 7 1.8969 -0.9847 -3.5435 8 14 1.0212 1.4952 -2.6723 9 1 2.1370 2.4737 -2.7240 10 1 0.2328 1.5767 -3.9280 11 1 0.1434 1.8062 -1.5156 12 6 2.0400 -0.7212 1.2493 13 16 1.4354 0.1339 2.7304 14 8 2.0480 1.4101 2.8544 15 8 0.0280 -0.0182 2.8544 16 7 2.0531 -0.7408 3.9936 17 6 3.5014 -0.7979 4.2059 18 6 3.7904 -1.3344 5.6094 19 1 3.0450 -2.0193 6.0135 20 6 4.4965 -0.3981 6.5920 21 6 5.2531 -1.5809 5.9842 22 6 5.5575 -2.7697 6.8981 23 6 6.3150 -1.2722 4.9269 24 1 -0.3633 0.6638 0.7845 25 1 -0.3633 0.3476 -0.9671 26 1 -0.3633 -1.0113 0.1826 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6723 -0.6464 -4.4244 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7489 1.2493 33 1 1.4559 -1.2151 4.5929 34 1 3.9515 -1.4585 3.4648 35 1 3.9233 0.2020 4.1053 36 1 4.7549 0.6002 6.2388 37 1 4.2157 -0.4668 7.6430 38 1 5.2236 -3.6905 6.4198 39 1 6.6311 -2.8230 7.0794 40 1 5.0348 -2.6424 7.8460 41 1 6.2611 -0.2181 4.6548 42 1 7.3035 -1.4934 5.3292 43 1 6.1369 -1.8851 4.0432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451186403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:19 Heat of formation + Delta-G solvation = -68.682365 kcal Electronic energy + Delta-G solvation = -22245.465508 eV Core-core repulsion = 19032.086686 eV Total energy + Delta-G solvation = -3213.378822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.77864 -38.49850 -38.12758 -36.94758 -35.64672 -34.04045 -30.26307 -28.97974 -28.53710 -28.14728 -27.12032 -26.72899 -22.26582 -21.63290 -20.35589 -19.64554 -18.66903 -18.10559 -17.56455 -17.13347 -16.91986 -16.22020 -15.65798 -15.27880 -15.04541 -14.94917 -14.77130 -14.61012 -14.42387 -14.17154 -14.08183 -13.46868 -13.24508 -13.19973 -13.06220 -12.97282 -12.78731 -12.71047 -12.65882 -12.58146 -12.25742 -12.00153 -11.89317 -11.85203 -11.81776 -11.12689 -10.90570 -10.68387 -10.51453 -10.41078 -10.19296 -8.34810 -6.34106 -0.65944 1.30297 1.35512 1.43199 1.83376 2.29746 2.77929 2.79337 2.99702 3.28094 3.65469 3.73455 3.85591 3.91146 4.07619 4.19490 4.23416 4.25206 4.41835 4.51145 4.60482 4.68948 4.72205 4.73615 4.80525 4.85527 4.93626 4.96305 5.00157 5.10610 5.13894 5.14397 5.16083 5.31457 5.35324 5.38492 5.51074 5.53069 5.63243 6.13212 6.26594 6.68810 7.30306 8.81017 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025451 B = 0.004389 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.883810 B = 6377.350319 C = 6852.949476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.044 3.956 3 C -0.187 4.187 4 C -0.503 4.503 5 H 0.050 0.950 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.917 3.083 9 H -0.275 1.275 10 H -0.306 1.306 11 H -0.222 1.222 12 C -0.584 4.584 13 S 2.617 3.383 14 O -0.986 6.986 15 O -0.987 6.987 16 N -1.110 6.110 17 C 0.135 3.865 18 C -0.159 4.159 19 H 0.121 0.879 20 C -0.174 4.174 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.128 4.128 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.266 0.734 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.424 0.576 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -1.623 21.088 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.041 3.959 3 C -0.243 4.243 4 C -0.541 4.541 5 H 0.068 0.932 6 C -0.172 4.172 7 N -0.575 5.575 8 Si 0.746 3.254 9 H -0.202 1.202 10 H -0.235 1.235 11 H -0.146 1.146 12 C -0.716 4.716 13 S 2.713 3.287 14 O -0.975 6.975 15 O -0.978 6.978 16 N -0.871 5.871 17 C 0.010 3.990 18 C -0.179 4.179 19 H 0.139 0.861 20 C -0.211 4.211 21 C -0.119 4.119 22 C -0.172 4.172 23 C -0.185 4.185 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.261 0.739 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.685 -0.767 20.900 21.672 hybrid contribution -0.157 -0.053 -0.907 0.922 sum 5.528 -0.820 19.993 20.759 Atomic orbital electron populations 1.22692 0.96833 1.02148 1.01589 1.18223 0.92766 0.92175 0.92713 1.22843 1.03000 0.97440 1.01038 1.20927 1.32415 1.11584 0.89221 0.93162 1.25662 0.95394 1.00462 0.95714 1.70057 1.50350 1.37592 0.99461 0.86718 0.79846 0.81854 0.76973 1.20217 1.23487 1.14634 1.30393 1.13021 1.13542 1.14594 1.04613 0.73540 0.74854 0.75696 1.93512 1.78457 1.39723 1.85839 1.93533 1.31062 1.86993 1.86165 1.55320 1.15132 1.70814 1.45862 1.21073 0.78889 1.01667 0.97414 1.22581 0.96702 1.03922 0.94659 0.86096 1.23458 1.03508 0.95066 0.99063 1.21724 0.91791 0.98187 1.00149 1.21385 1.02322 0.95566 0.97900 1.21476 0.97753 1.01652 0.97576 0.93096 0.92526 0.91695 0.91036 0.93852 0.91724 0.92501 0.84145 0.84190 0.73947 0.90061 0.90779 0.88976 0.87667 0.91896 0.91313 0.91913 0.92470 0.90971 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.64 6.95 71.98 0.50 -7.14 16 2 C 0.04 1.94 0.52 -52.93 -0.03 1.91 16 3 C -0.19 -8.00 7.22 71.98 0.52 -7.48 16 4 C -0.50 -27.00 8.62 25.60 0.22 -26.78 16 5 H 0.05 2.91 7.99 -2.91 -0.02 2.88 16 6 C 0.03 1.49 5.31 84.65 0.45 1.94 16 7 N -0.94 -56.79 13.96 21.45 0.30 -56.49 16 8 Si 0.92 43.96 22.79 68.60 1.56 45.52 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 11 H -0.22 -9.73 4.67 99.48 0.46 -9.26 16 12 C -0.58 -20.17 4.99 71.98 0.36 -19.81 16 13 S 2.62 83.74 4.50 -56.49 -0.25 83.48 16 14 O -0.99 -36.06 15.12 -127.65 -1.93 -37.99 16 15 O -0.99 -36.38 15.93 -127.65 -2.03 -38.41 16 16 N -1.11 -25.32 5.89 -187.49 -1.10 -26.42 16 17 C 0.14 2.72 5.49 86.38 0.47 3.19 16 18 C -0.16 -2.57 5.62 -10.79 -0.06 -2.63 16 19 H 0.12 1.69 7.98 -2.39 -0.02 1.67 16 20 C -0.17 -2.66 9.47 30.59 0.29 -2.37 16 21 C -0.12 -1.68 2.70 -52.18 -0.14 -1.83 16 22 C -0.11 -1.31 9.85 71.98 0.71 -0.60 16 23 C -0.13 -1.84 8.86 71.98 0.64 -1.20 16 24 H 0.05 2.06 6.21 -2.39 -0.01 2.05 16 25 H 0.06 2.55 4.32 -2.39 -0.01 2.54 16 26 H 0.06 2.68 8.11 -2.39 -0.02 2.66 16 27 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.04 1.92 2.28 -2.39 -0.01 1.91 16 29 H 0.06 2.57 5.46 -2.39 -0.01 2.56 16 30 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 32 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 33 H 0.42 7.88 8.51 -96.75 -0.82 7.06 16 34 H 0.08 1.45 7.77 -2.38 -0.02 1.43 16 35 H 0.07 1.61 7.43 -2.39 -0.02 1.59 16 36 H 0.09 1.52 7.94 -2.39 -0.02 1.50 16 37 H 0.10 1.35 8.05 -2.38 -0.02 1.33 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.69 7.92 -2.38 -0.02 0.67 16 40 H 0.06 0.64 7.90 -2.39 -0.02 0.62 16 41 H 0.06 0.87 7.90 -2.39 -0.02 0.85 16 42 H 0.07 0.88 7.92 -2.39 -0.02 0.86 16 43 H 0.06 0.93 7.83 -2.38 -0.02 0.91 16 Total: -1.00 -69.16 335.04 0.41 -68.75 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -0.07 Total: 24.34 kcal Atomic # 6 Polarization: -66.71 SS G_CDS: 3.93 Total: -62.78 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -0.80 Total: -82.91 kcal Atomic # 8 Polarization: -72.44 SS G_CDS: -3.96 Total: -76.40 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.56 Total: 45.52 kcal Atomic # 16 Polarization: 83.74 SS G_CDS: -0.25 Total: 83.48 kcal Total: -69.16 0.41 -68.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451186403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.068 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds