Wall clock time and date at job start Tue Mar 31 2020 07:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00194 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00202 * 2 1 3 13 13 S 1.81403 * 109.47153 * 60.00115 * 12 2 1 14 14 O 1.42100 * 110.54033 * 291.62070 * 13 12 2 15 15 O 1.42093 * 110.54359 * 68.37403 * 13 12 2 16 16 N 1.65606 * 104.44724 * 180.02562 * 13 12 2 17 17 C 1.46492 * 120.00135 * 64.99830 * 16 13 12 18 18 C 1.53000 * 109.47061 * 165.00255 * 17 16 13 19 19 H 1.09004 * 115.55155 * 330.57915 * 18 17 16 20 20 C 1.53005 * 117.50283 * 116.25390 * 18 17 16 21 21 C 1.53004 * 117.50016 * 184.91442 * 18 17 16 22 22 C 1.53005 * 117.49617 * 359.97438 * 21 18 17 23 23 C 1.52993 * 117.50162 * 145.01669 * 21 18 17 24 24 H 1.08997 * 109.47359 * 300.00345 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47089 * 299.99981 * 3 2 1 29 29 H 1.08995 * 109.47131 * 60.00150 * 3 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46926 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.46837 * 300.00010 * 12 2 1 33 33 H 0.97001 * 119.99859 * 245.00017 * 16 13 12 34 34 H 1.08999 * 109.47374 * 284.99914 * 17 16 13 35 35 H 1.08995 * 109.47584 * 44.99973 * 17 16 13 36 36 H 1.08997 * 117.49620 * 214.97731 * 20 18 17 37 37 H 1.09000 * 117.49522 * 0.02562 * 20 18 17 38 38 H 1.08993 * 109.47199 * 60.00359 * 22 21 18 39 39 H 1.08998 * 109.46556 * 180.02562 * 22 21 18 40 40 H 1.09006 * 109.46754 * 299.99656 * 22 21 18 41 41 H 1.09004 * 109.47122 * 59.99543 * 23 21 18 42 42 H 1.09000 * 109.47595 * 179.97438 * 23 21 18 43 43 H 1.09006 * 109.47163 * 300.00329 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.3427 -2.1618 4.4118 10 1 3.6293 -1.7584 3.7121 11 1 2.4865 -0.1414 5.1122 12 6 2.0400 -0.7212 -1.2493 13 16 1.4353 0.1340 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0479 1.4101 -2.8544 16 7 2.0530 -0.7407 -3.9937 17 6 1.6232 -2.1251 -4.2055 18 6 2.0319 -2.5769 -5.6089 19 1 2.0826 -1.7889 -6.3604 20 6 3.0411 -3.7219 -5.7167 21 6 1.5705 -3.9618 -6.0676 22 6 0.7362 -4.7890 -5.0874 23 6 1.2162 -4.1346 -7.5459 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7089 1.1613 3.4844 31 1 3.1300 -0.7208 -1.2495 32 1 1.6766 -1.7488 -1.2493 33 1 2.6993 -0.3364 -4.5934 34 1 2.0957 -2.7697 -3.4643 35 1 0.5398 -2.1888 -4.1043 36 1 3.7554 -3.6873 -6.5392 37 1 3.4135 -4.1535 -4.7877 38 1 -0.1774 -4.2480 -4.8413 39 1 0.4809 -5.7450 -5.5446 40 1 1.3115 -4.9636 -4.1781 41 1 2.0883 -3.9042 -8.1579 42 1 0.9070 -5.1640 -7.7275 43 1 0.4013 -3.4588 -7.8057 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451186405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:23 Heat of formation + Delta-G solvation = -64.962911 kcal Electronic energy + Delta-G solvation = -22153.063079 eV Core-core repulsion = 18939.845545 eV Total energy + Delta-G solvation = -3213.217534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.04575 -36.50955 -36.26242 -35.29792 -34.54638 -31.66049 -29.55541 -27.89513 -26.63822 -25.85886 -25.70391 -25.21103 -21.42861 -19.71419 -19.12499 -18.50581 -17.15383 -16.46342 -15.90777 -15.34892 -15.00694 -14.77447 -14.48395 -14.30944 -13.92258 -13.76589 -13.12657 -12.97878 -12.68596 -12.49659 -12.42053 -12.25293 -12.05927 -11.88897 -11.52000 -11.41278 -11.23895 -11.07058 -11.06268 -10.92342 -10.69661 -10.40220 -10.27281 -10.24708 -10.07076 -9.76586 -9.64448 -9.57102 -9.17450 -8.65900 -8.39833 -6.03151 -4.15126 0.89121 3.18454 3.25717 3.33050 3.35037 3.53121 4.29241 4.36549 4.42016 4.53171 4.60391 4.83497 4.86672 5.01720 5.22156 5.27006 5.42105 5.45623 5.60711 5.61702 5.66105 5.69326 5.71481 5.74082 5.78537 5.91838 5.96759 6.12154 6.15082 6.38877 6.71285 6.80739 6.91982 7.03860 7.17716 7.32546 7.51462 7.68142 7.98918 8.10267 8.33549 8.83322 9.50226 10.98159 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.004296 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.683287 B = 6515.694315 C = 7199.786802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.286 1.286 12 C -0.582 4.582 13 S 2.594 3.406 14 O -0.965 6.965 15 O -0.966 6.966 16 N -1.129 6.129 17 C 0.147 3.853 18 C -0.152 4.152 19 H 0.111 0.889 20 C -0.171 4.171 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.115 4.115 24 H 0.095 0.905 25 H 0.028 0.972 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.028 0.972 29 H 0.095 0.905 30 H 0.262 0.738 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.411 0.589 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -9.142 -15.828 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.211 1.211 12 C -0.716 4.716 13 S 2.692 3.308 14 O -0.955 6.955 15 O -0.956 6.956 16 N -0.886 5.886 17 C 0.020 3.980 18 C -0.172 4.172 19 H 0.129 0.871 20 C -0.208 4.208 21 C -0.124 4.124 22 C -0.179 4.179 23 C -0.172 4.172 24 H 0.113 0.887 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.244 0.756 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.637 -8.334 -15.684 17.836 hybrid contribution 1.119 -0.863 0.862 1.655 sum 2.756 -9.197 -14.823 17.660 Atomic orbital electron populations 1.22272 0.96872 1.00600 1.02358 1.17930 0.92850 0.92212 0.89076 1.22271 0.99711 0.97823 1.02324 1.20944 1.31707 1.12060 0.89423 0.92340 1.24942 0.94916 0.94968 0.98927 1.69805 1.36348 1.22542 1.23459 0.86536 0.79166 0.79377 0.82551 1.20650 1.19974 1.21134 1.30523 1.11332 1.12726 1.16989 1.05569 0.74900 0.74691 0.75619 1.93535 1.29927 1.86460 1.85530 1.93550 1.78125 1.38123 1.85795 1.55825 1.60993 1.24124 1.47652 1.20808 1.00302 0.81800 0.95062 1.22621 1.04508 0.92173 0.97856 0.87129 1.23400 0.91791 1.02232 1.03352 1.21631 0.96654 0.97652 0.96454 1.21418 0.99672 0.98993 0.97861 1.21361 1.01467 1.01941 0.92455 0.88679 0.95295 0.94512 0.94487 0.95361 0.88647 0.92753 0.86289 0.86559 0.75580 0.91736 0.89882 0.88793 0.88419 0.91632 0.92032 0.92026 0.92544 0.92046 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 7.77 37.16 0.29 -3.74 16 2 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 3 C -0.16 -4.05 7.78 37.16 0.29 -3.77 16 4 C -0.50 -13.18 8.01 -34.44 -0.28 -13.45 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.15 9.35 55.43 0.52 -23.64 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 C -0.58 -11.33 5.01 37.16 0.19 -11.14 16 13 S 2.59 48.12 4.49 -107.50 -0.48 47.63 16 14 O -0.96 -20.32 15.11 -57.54 -0.87 -21.19 16 15 O -0.97 -20.39 15.70 -57.54 -0.90 -21.29 16 16 N -1.13 -15.45 5.89 -10.62 -0.06 -15.52 16 17 C 0.15 1.76 5.49 -4.05 -0.02 1.74 16 18 C -0.15 -1.50 5.55 -90.61 -0.50 -2.00 16 19 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 20 C -0.17 -1.46 9.47 -26.69 -0.25 -1.71 16 21 C -0.12 -1.08 2.70 -154.47 -0.42 -1.50 16 22 C -0.12 -1.05 8.86 37.16 0.33 -0.72 16 23 C -0.12 -0.86 9.85 37.15 0.37 -0.49 16 24 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 25 H 0.03 0.68 5.46 -51.93 -0.28 0.39 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 29 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 32 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 33 H 0.41 4.80 8.62 -34.47 -0.30 4.51 16 34 H 0.06 0.70 7.88 -51.93 -0.41 0.29 16 35 H 0.08 1.06 7.32 -51.93 -0.38 0.68 16 36 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.10 0.82 7.94 -51.93 -0.41 0.41 16 38 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 39 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 40 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 41 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 42 H 0.06 0.41 7.93 -51.93 -0.41 -0.01 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -31.32 344.82 -9.05 -40.37 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.24 Total: 6.10 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: -0.18 Total: -33.26 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.46 Total: -39.15 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.77 Total: -42.48 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 48.12 SS G_CDS: -0.48 Total: 47.63 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.32 -9.05 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451186405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.595 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds