Wall clock time and date at job start Tue Mar 31 2020 07:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00194 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00202 * 2 1 3 13 13 S 1.81403 * 109.47153 * 60.00115 * 12 2 1 14 14 O 1.42100 * 110.54033 * 291.62070 * 13 12 2 15 15 O 1.42093 * 110.54359 * 68.37403 * 13 12 2 16 16 N 1.65606 * 104.44724 * 180.02562 * 13 12 2 17 17 C 1.46492 * 120.00135 * 64.99830 * 16 13 12 18 18 C 1.53000 * 109.47061 * 165.00255 * 17 16 13 19 19 H 1.09004 * 115.55155 * 330.57915 * 18 17 16 20 20 C 1.53005 * 117.50283 * 116.25390 * 18 17 16 21 21 C 1.53004 * 117.50016 * 184.91442 * 18 17 16 22 22 C 1.53005 * 117.49617 * 359.97438 * 21 18 17 23 23 C 1.52993 * 117.50162 * 145.01669 * 21 18 17 24 24 H 1.08997 * 109.47359 * 300.00345 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47089 * 299.99981 * 3 2 1 29 29 H 1.08995 * 109.47131 * 60.00150 * 3 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46926 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.46837 * 300.00010 * 12 2 1 33 33 H 0.97001 * 119.99859 * 245.00017 * 16 13 12 34 34 H 1.08999 * 109.47374 * 284.99914 * 17 16 13 35 35 H 1.08995 * 109.47584 * 44.99973 * 17 16 13 36 36 H 1.08997 * 117.49620 * 214.97731 * 20 18 17 37 37 H 1.09000 * 117.49522 * 0.02562 * 20 18 17 38 38 H 1.08993 * 109.47199 * 60.00359 * 22 21 18 39 39 H 1.08998 * 109.46556 * 180.02562 * 22 21 18 40 40 H 1.09006 * 109.46754 * 299.99656 * 22 21 18 41 41 H 1.09004 * 109.47122 * 59.99543 * 23 21 18 42 42 H 1.09000 * 109.47595 * 179.97438 * 23 21 18 43 43 H 1.09006 * 109.47163 * 300.00329 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.3427 -2.1618 4.4118 10 1 3.6293 -1.7584 3.7121 11 1 2.4865 -0.1414 5.1122 12 6 2.0400 -0.7212 -1.2493 13 16 1.4353 0.1340 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0479 1.4101 -2.8544 16 7 2.0530 -0.7407 -3.9937 17 6 1.6232 -2.1251 -4.2055 18 6 2.0319 -2.5769 -5.6089 19 1 2.0826 -1.7889 -6.3604 20 6 3.0411 -3.7219 -5.7167 21 6 1.5705 -3.9618 -6.0676 22 6 0.7362 -4.7890 -5.0874 23 6 1.2162 -4.1346 -7.5459 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7089 1.1613 3.4844 31 1 3.1300 -0.7208 -1.2495 32 1 1.6766 -1.7488 -1.2493 33 1 2.6993 -0.3364 -4.5934 34 1 2.0957 -2.7697 -3.4643 35 1 0.5398 -2.1888 -4.1043 36 1 3.7554 -3.6873 -6.5392 37 1 3.4135 -4.1535 -4.7877 38 1 -0.1774 -4.2480 -4.8413 39 1 0.4809 -5.7450 -5.5446 40 1 1.3115 -4.9636 -4.1781 41 1 2.0883 -3.9042 -8.1579 42 1 0.9070 -5.1640 -7.7275 43 1 0.4013 -3.4588 -7.8057 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451186405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:22 Heat of formation + Delta-G solvation = -84.881856 kcal Electronic energy + Delta-G solvation = -22153.926829 eV Core-core repulsion = 18939.845545 eV Total energy + Delta-G solvation = -3214.081284 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76979 -38.12307 -38.09283 -36.89659 -35.62428 -33.62689 -30.26157 -28.53997 -28.32035 -27.68451 -27.25610 -26.72763 -22.19973 -21.37915 -20.39767 -19.61590 -18.59092 -17.84453 -17.53506 -16.91537 -16.60999 -16.20722 -15.39064 -15.26719 -15.03435 -14.75224 -14.55900 -14.46941 -14.41262 -13.82164 -13.58126 -13.28492 -13.08806 -12.99141 -12.94949 -12.88347 -12.77994 -12.73105 -12.50308 -12.23209 -12.17845 -12.12448 -11.96317 -11.90749 -11.55986 -11.41000 -10.99569 -10.62194 -10.48862 -10.40980 -10.16483 -8.02497 -6.21170 -0.59899 1.44540 1.46369 1.54960 1.90041 2.44710 2.78831 2.87607 3.19766 3.31667 3.68475 3.84197 3.89280 4.01461 4.19311 4.20621 4.24262 4.44066 4.60936 4.72358 4.76886 4.85000 4.86573 4.87569 4.95870 4.99980 5.00500 5.09635 5.10212 5.13674 5.15450 5.31854 5.34764 5.39491 5.50566 5.51559 5.65169 5.98023 6.11733 6.15336 6.34681 6.83671 7.47161 8.97384 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.004296 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.683287 B = 6515.694315 C = 7199.786802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.068 3.932 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.267 1.267 11 H -0.288 1.288 12 C -0.585 4.585 13 S 2.614 3.386 14 O -0.992 6.992 15 O -0.993 6.993 16 N -1.111 6.111 17 C 0.138 3.862 18 C -0.164 4.164 19 H 0.114 0.886 20 C -0.162 4.162 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.115 4.115 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.261 0.739 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.423 0.577 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -10.970 -16.921 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.066 3.934 3 C -0.218 4.218 4 C -0.556 4.556 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.191 1.191 11 H -0.214 1.214 12 C -0.718 4.718 13 S 2.712 3.288 14 O -0.982 6.982 15 O -0.984 6.984 16 N -0.873 5.873 17 C 0.012 3.988 18 C -0.184 4.184 19 H 0.132 0.868 20 C -0.199 4.199 21 C -0.124 4.124 22 C -0.184 4.184 23 C -0.172 4.172 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.259 0.741 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.812 -10.162 -16.781 19.819 hybrid contribution 0.744 -0.321 1.137 1.396 sum 3.556 -10.484 -15.644 19.165 Atomic orbital electron populations 1.22199 0.97664 1.00511 1.01323 1.17931 0.92402 0.92118 0.90937 1.22207 0.99820 0.98456 1.01314 1.21299 1.31643 1.12282 0.90380 0.91822 1.25687 0.95202 0.95637 1.01696 1.69950 1.37247 1.23678 1.23822 0.85607 0.78884 0.78236 0.79192 1.20331 1.19138 1.21352 1.30449 1.12545 1.13391 1.15419 1.04678 0.74136 0.74179 0.75851 1.93499 1.31842 1.86819 1.86004 1.93504 1.78424 1.40157 1.86284 1.55348 1.61019 1.24781 1.46118 1.21038 0.99991 0.80669 0.97113 1.22557 1.06248 0.92953 0.96593 0.86808 1.23477 0.91784 1.00689 1.03920 1.21755 0.97007 0.96488 0.97171 1.21468 0.99335 0.99500 0.98071 1.21384 1.01732 1.02469 0.91654 0.91128 0.94879 0.94052 0.94120 0.94943 0.91059 0.92953 0.84452 0.84518 0.74089 0.90265 0.90914 0.87526 0.88138 0.92478 0.90868 0.91982 0.91771 0.91151 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.90 7.77 71.98 0.56 -7.34 16 2 C 0.07 3.28 0.52 -52.93 -0.03 3.25 16 3 C -0.16 -7.99 7.78 71.98 0.56 -7.43 16 4 C -0.52 -26.78 8.01 25.60 0.21 -26.57 16 5 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 6 C 0.02 0.90 5.15 84.66 0.44 1.34 16 7 N -0.91 -50.36 9.35 21.45 0.20 -50.16 16 8 Si 0.95 41.96 29.54 68.60 2.03 43.98 16 9 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 12 C -0.59 -21.86 5.01 71.98 0.36 -21.50 16 13 S 2.61 94.19 4.49 -56.49 -0.25 93.94 16 14 O -0.99 -41.25 15.11 -127.65 -1.93 -43.18 16 15 O -0.99 -41.24 15.70 -127.65 -2.00 -43.24 16 16 N -1.11 -28.35 5.89 -187.51 -1.10 -29.46 16 17 C 0.14 3.03 5.49 86.38 0.47 3.50 16 18 C -0.16 -2.86 5.55 -10.79 -0.06 -2.92 16 19 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 20 C -0.16 -2.30 9.47 30.62 0.29 -2.01 16 21 C -0.12 -1.88 2.70 -52.16 -0.14 -2.02 16 22 C -0.13 -1.93 8.86 71.98 0.64 -1.29 16 23 C -0.12 -1.45 9.85 71.98 0.71 -0.74 16 24 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 25 H 0.03 1.57 5.46 -2.38 -0.01 1.55 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 29 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 30 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 32 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 33 H 0.42 8.99 8.62 -96.74 -0.83 8.16 16 34 H 0.08 1.51 7.88 -2.39 -0.02 1.49 16 35 H 0.07 1.77 7.32 -2.39 -0.02 1.75 16 36 H 0.11 1.26 8.05 -2.39 -0.02 1.24 16 37 H 0.10 1.39 7.94 -2.39 -0.02 1.37 16 38 H 0.06 0.96 7.83 -2.39 -0.02 0.94 16 39 H 0.07 0.92 7.92 -2.39 -0.02 0.91 16 40 H 0.06 0.92 7.90 -2.38 -0.02 0.90 16 41 H 0.06 0.71 7.90 -2.38 -0.02 0.69 16 42 H 0.07 0.76 7.93 -2.39 -0.02 0.74 16 43 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -66.08 344.82 1.09 -64.98 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.15 Total: 26.87 kcal Atomic # 6 Polarization: -67.74 SS G_CDS: 4.00 Total: -63.74 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -0.90 Total: -79.62 kcal Atomic # 8 Polarization: -82.49 SS G_CDS: -3.93 Total: -86.42 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 94.19 SS G_CDS: -0.25 Total: 93.94 kcal Total: -66.08 1.09 -64.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451186405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.898 kcal (2) G-P(sol) polarization free energy of solvation -66.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds