Wall clock time and date at job start Tue Mar 31 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 119.99552 * 2 1 4 4 H 1.08998 * 115.54850 * 98.13982 * 3 2 1 5 5 C 1.53005 * 117.49670 * 243.80662 * 3 2 1 6 6 C 1.53001 * 117.50029 * 312.46598 * 3 2 1 7 7 C 1.53004 * 117.49839 * 359.97438 * 6 3 2 8 8 C 1.52995 * 117.49745 * 144.99786 * 6 3 2 9 9 S 1.65591 * 120.00407 * 180.02562 * 2 1 3 10 10 O 1.42104 * 104.28010 * 26.06574 * 9 2 1 11 11 O 1.42097 * 104.28260 * 153.92844 * 9 2 1 12 12 C 1.81406 * 104.44804 * 269.99963 * 9 2 1 13 13 C 1.53003 * 109.47149 * 179.97438 * 12 9 2 14 14 C 1.53000 * 109.47155 * 300.00213 * 13 12 9 15 15 C 1.53002 * 109.46871 * 59.99616 * 13 12 9 16 16 C 1.50699 * 109.46994 * 179.97438 * 13 12 9 17 17 H 1.07996 * 120.00188 * 357.88338 * 16 13 12 18 18 C 1.37878 * 119.99633 * 177.88740 * 16 13 12 19 19 N 1.31512 * 120.00414 * 2.40805 * 18 16 13 20 20 Si 1.86801 * 119.99712 * 182.41513 * 18 16 13 21 21 H 1.48502 * 109.47577 * 94.98931 * 20 18 16 22 22 H 1.48503 * 109.47080 * 214.99096 * 20 18 16 23 23 H 1.48502 * 109.47180 * 334.98896 * 20 18 16 24 24 H 1.09006 * 109.47440 * 94.54965 * 1 2 3 25 25 H 1.09002 * 109.47098 * 214.54581 * 1 2 3 26 26 H 1.09000 * 109.47222 * 334.54852 * 1 2 3 27 27 H 1.08995 * 117.49977 * 215.00514 * 5 3 2 28 28 H 1.08995 * 117.49996 * 0.02562 * 5 3 2 29 29 H 1.09000 * 109.47149 * 67.36823 * 7 6 3 30 30 H 1.08995 * 109.46624 * 187.37463 * 7 6 3 31 31 H 1.09005 * 109.46786 * 307.37008 * 7 6 3 32 32 H 1.09001 * 109.47347 * 60.00326 * 8 6 3 33 33 H 1.09001 * 109.47390 * 180.02562 * 8 6 3 34 34 H 1.09003 * 109.47214 * 300.00224 * 8 6 3 35 35 H 1.09000 * 109.46549 * 299.99795 * 12 9 2 36 36 H 1.08999 * 109.46844 * 59.99961 * 12 9 2 37 37 H 1.08999 * 109.47404 * 59.38673 * 14 13 12 38 38 H 1.09001 * 109.47188 * 179.39484 * 14 13 12 39 39 H 1.09009 * 109.46515 * 299.39371 * 14 13 12 40 40 H 1.09003 * 109.46897 * 60.00185 * 15 13 12 41 41 H 1.09003 * 109.46939 * 179.97438 * 15 13 12 42 42 H 1.08992 * 109.47274 * 300.00011 * 15 13 12 43 43 H 0.97000 * 120.00171 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 1 2.5530 1.6064 0.9735 5 6 3.0694 1.5812 -1.2178 6 6 1.7571 2.3388 -1.0011 7 6 0.5859 2.0015 -1.9261 8 6 1.8495 3.8006 -0.5591 9 16 2.2930 -1.4340 -0.0006 10 8 1.3970 -2.3559 -0.6062 11 8 3.5395 -1.1188 -0.6057 12 6 2.5194 -1.8267 1.7559 13 6 3.2810 -3.1470 1.8893 14 6 2.4843 -4.2658 1.2150 15 6 4.6484 -3.0173 1.2152 16 6 3.4696 -3.4729 3.3485 17 1 3.1149 -2.7885 4.1048 18 6 4.0949 -4.6449 3.7178 19 7 4.5690 -5.4557 2.7972 20 14 4.2686 -5.0812 5.5258 21 1 3.1476 -5.9668 5.9313 22 1 5.5585 -5.7841 5.7437 23 1 4.2378 -3.8395 6.3398 24 1 -0.3634 -0.0815 -1.0245 25 1 -0.3633 -0.8465 0.5828 26 1 -0.3634 0.9279 0.4416 27 1 3.9987 2.1241 -1.0455 28 1 3.0978 0.8428 -2.0191 29 1 -0.3278 1.9138 -1.3382 30 1 0.4675 2.7932 -2.6658 31 1 0.7837 1.0571 -2.4332 32 1 2.8843 4.0420 -0.3162 33 1 1.5053 4.4468 -1.3666 34 1 1.2244 3.9544 0.3205 35 1 3.0867 -1.0295 2.2362 36 1 1.5452 -1.9196 2.2358 37 1 2.3389 -4.0246 0.1621 38 1 3.0319 -5.2043 1.3007 39 1 1.5142 -4.3653 1.7022 40 1 5.2160 -2.2202 1.6955 41 1 5.1912 -3.9577 1.3107 42 1 4.5124 -2.7813 0.1599 43 1 5.0086 -6.2804 3.0571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451473235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:46 Heat of formation + Delta-G solvation = -66.057412 kcal Electronic energy + Delta-G solvation = -22910.616715 eV Core-core repulsion = 19697.351720 eV Total energy + Delta-G solvation = -3213.264995 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.97602 -38.13375 -38.10390 -36.84068 -35.03014 -33.64107 -30.42528 -28.50941 -28.16367 -27.71270 -27.26696 -26.49482 -23.31279 -21.31783 -20.16252 -19.48268 -18.56674 -17.82467 -17.28702 -16.97708 -16.66495 -16.10531 -15.80812 -15.06008 -14.79349 -14.71896 -14.44276 -14.34304 -14.00630 -13.85498 -13.66629 -13.51356 -13.12049 -13.00938 -12.92800 -12.89357 -12.77333 -12.62318 -12.56531 -12.38968 -12.17236 -12.12141 -11.98703 -11.93923 -11.58747 -11.41826 -11.12815 -10.68190 -10.58863 -10.42794 -9.78170 -8.04235 -6.23061 -0.62293 1.42990 1.44812 1.53964 1.78842 2.43361 2.63978 2.92838 3.17519 3.24993 3.61697 3.79773 3.90961 4.03703 4.15616 4.20823 4.26080 4.56980 4.58357 4.76481 4.81609 4.84037 4.84531 4.88826 4.90270 4.97589 5.02788 5.05504 5.08593 5.10180 5.11297 5.17668 5.33261 5.36420 5.48012 5.50626 5.62927 5.74557 5.94962 6.09530 6.32689 6.81453 7.45222 8.95791 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030263 B = 0.004644 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.988947 B = 6027.474384 C = 6200.630159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.978 5.978 3 C 0.058 3.942 4 H 0.131 0.869 5 C -0.175 4.175 6 C -0.103 4.103 7 C -0.122 4.122 8 C -0.112 4.112 9 S 2.610 3.390 10 O -0.991 6.991 11 O -0.978 6.978 12 C -0.586 4.586 13 C 0.068 3.932 14 C -0.159 4.159 15 C -0.156 4.156 16 C -0.518 4.518 17 H 0.062 0.938 18 C 0.018 3.982 19 N -0.908 5.908 20 Si 0.955 3.045 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.267 1.267 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 17.598 -4.829 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.815 5.815 3 C -0.048 4.048 4 H 0.148 0.852 5 C -0.214 4.214 6 C -0.105 4.105 7 C -0.179 4.179 8 C -0.169 4.169 9 S 2.709 3.291 10 O -0.982 6.982 11 O -0.969 6.969 12 C -0.718 4.718 13 C 0.066 3.934 14 C -0.217 4.217 15 C -0.214 4.214 16 C -0.557 4.557 17 H 0.080 0.920 18 C -0.182 4.182 19 N -0.547 5.547 20 Si 0.781 3.219 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.191 1.191 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.812 16.958 -5.641 19.504 hybrid contribution 0.317 -0.837 1.482 1.732 sum -7.494 16.121 -4.159 18.258 Atomic orbital electron populations 1.21840 0.77280 1.04282 1.02583 1.56890 1.15320 1.19198 1.90135 1.21921 1.01032 0.85842 0.96028 0.85168 1.23633 0.95741 1.02776 0.99223 1.22015 0.95922 0.93781 0.98759 1.21585 0.96788 1.01047 0.98518 1.21392 1.02808 0.90534 1.02153 1.05006 0.73105 0.72558 0.78443 1.93490 1.65852 1.63187 1.75628 1.93491 1.44928 1.83179 1.75258 1.30492 1.10133 1.08176 1.23048 1.17929 0.90953 0.87587 0.96884 1.22200 0.99355 1.03222 0.96937 1.22173 0.99851 1.02338 0.97035 1.21292 1.38133 1.05179 0.91103 0.92025 1.25689 0.94912 0.96294 1.01280 1.69950 1.38699 1.12184 1.33850 0.85587 0.77316 0.78375 0.80613 1.20398 1.21149 1.19095 0.92162 0.91529 0.87781 0.86704 0.90337 0.90162 0.90552 0.94355 0.91690 0.90582 0.90911 0.84965 0.85091 0.95013 0.90919 0.94276 0.94143 0.91287 0.94891 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.84 8.07 127.77 1.03 2.87 16 2 N -0.98 -27.01 3.24 -516.49 -1.67 -28.68 16 3 C 0.06 1.38 5.67 44.99 0.26 1.63 16 4 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 5 C -0.18 -4.32 8.48 30.62 0.26 -4.06 16 6 C -0.10 -1.90 2.66 -52.16 -0.14 -2.04 16 7 C -0.12 -2.12 7.85 71.98 0.56 -1.56 16 8 C -0.11 -1.39 9.85 71.98 0.71 -0.69 16 9 S 2.61 98.26 4.42 -56.49 -0.25 98.01 16 10 O -0.99 -42.43 14.78 -127.65 -1.89 -44.32 16 11 O -0.98 -41.03 13.26 -127.65 -1.69 -42.72 16 12 C -0.59 -22.98 5.12 71.98 0.37 -22.61 16 13 C 0.07 3.38 0.52 -52.93 -0.03 3.35 16 14 C -0.16 -8.11 7.77 71.98 0.56 -7.55 16 15 C -0.16 -7.90 7.79 71.98 0.56 -7.34 16 16 C -0.52 -27.39 8.01 25.60 0.21 -27.18 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 18 C 0.02 0.94 5.14 84.66 0.44 1.38 16 19 N -0.91 -50.86 9.37 21.45 0.20 -50.66 16 20 Si 0.96 42.41 29.54 68.60 2.03 44.43 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H 0.06 1.28 6.62 -2.38 -0.02 1.26 16 25 H 0.07 1.47 7.96 -2.39 -0.02 1.45 16 26 H 0.10 1.57 7.43 -2.39 -0.02 1.56 16 27 H 0.11 2.47 8.05 -2.39 -0.02 2.45 16 28 H 0.08 2.35 7.51 -2.39 -0.02 2.33 16 29 H 0.08 1.15 6.08 -2.39 -0.01 1.14 16 30 H 0.08 1.05 8.05 -2.39 -0.02 1.03 16 31 H 0.04 0.83 7.53 -2.38 -0.02 0.81 16 32 H 0.06 0.78 7.90 -2.39 -0.02 0.76 16 33 H 0.08 0.77 8.01 -2.39 -0.02 0.75 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.13 4.68 8.14 -2.39 -0.02 4.66 16 36 H 0.13 4.63 8.14 -2.39 -0.02 4.61 16 37 H 0.03 1.55 5.42 -2.39 -0.01 1.53 16 38 H 0.07 4.02 6.01 -2.39 -0.01 4.01 16 39 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 3.80 6.15 -2.39 -0.01 3.79 16 42 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 43 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -67.05 335.95 2.49 -64.57 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.98 Total: 23.18 kcal Atomic # 6 Polarization: -68.58 SS G_CDS: 4.78 Total: -63.80 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -1.47 Total: -79.34 kcal Atomic # 8 Polarization: -83.46 SS G_CDS: -3.58 Total: -87.04 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 98.26 SS G_CDS: -0.25 Total: 98.01 kcal Total: -67.05 2.49 -64.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451473235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.489 kcal (2) G-P(sol) polarization free energy of solvation -67.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds