Wall clock time and date at job start Tue Mar 31 2020 07:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99984 * 2 1 4 4 H 1.09000 * 115.54737 * 154.41353 * 3 2 1 5 5 C 1.53001 * 117.51659 * 8.71709 * 3 2 1 6 6 C 1.52992 * 117.49878 * 300.08401 * 3 2 1 7 7 C 1.53004 * 117.49820 * 214.99959 * 6 3 2 8 8 C 1.52993 * 117.50278 * 0.02667 * 6 3 2 9 9 S 1.65604 * 119.99831 * 180.02562 * 2 1 3 10 10 O 1.42103 * 104.27819 * 26.07184 * 9 2 1 11 11 O 1.42097 * 104.27815 * 153.92965 * 9 2 1 12 12 C 1.81406 * 104.44626 * 270.00124 * 9 2 1 13 13 C 1.52999 * 109.47061 * 180.02562 * 12 9 2 14 14 C 1.53004 * 109.46804 * 300.00052 * 13 12 9 15 15 C 1.53003 * 109.46958 * 59.99590 * 13 12 9 16 16 C 1.50692 * 109.47289 * 180.02562 * 13 12 9 17 17 H 1.07999 * 119.99967 * 0.83011 * 16 13 12 18 18 C 1.37879 * 120.00373 * 180.83572 * 16 13 12 19 19 N 1.31508 * 120.00176 * 194.57625 * 18 16 13 20 20 Si 1.86802 * 119.99570 * 14.57902 * 18 16 13 21 21 H 1.48497 * 109.47494 * 84.45224 * 20 18 16 22 22 H 1.48512 * 109.46923 * 204.45535 * 20 18 16 23 23 H 1.48506 * 109.47059 * 324.45151 * 20 18 16 24 24 H 1.09006 * 109.46727 * 90.00016 * 1 2 3 25 25 H 1.09000 * 109.47400 * 209.99433 * 1 2 3 26 26 H 1.09000 * 109.47002 * 330.00176 * 1 2 3 27 27 H 1.08992 * 117.50094 * 0.02562 * 5 3 2 28 28 H 1.09001 * 117.49310 * 145.03204 * 5 3 2 29 29 H 1.09001 * 109.46811 * 60.00714 * 7 6 3 30 30 H 1.09004 * 109.46743 * 180.02562 * 7 6 3 31 31 H 1.08997 * 109.47347 * 300.00547 * 7 6 3 32 32 H 1.08997 * 109.47438 * 59.99717 * 8 6 3 33 33 H 1.09001 * 109.47771 * 179.97438 * 8 6 3 34 34 H 1.08997 * 109.47033 * 299.99948 * 8 6 3 35 35 H 1.08999 * 109.46889 * 300.00168 * 12 9 2 36 36 H 1.08996 * 109.47095 * 59.99954 * 12 9 2 37 37 H 1.08999 * 109.47582 * 70.23771 * 14 13 12 38 38 H 1.09002 * 109.46871 * 190.22798 * 14 13 12 39 39 H 1.08999 * 109.47492 * 310.22879 * 14 13 12 40 40 H 1.08999 * 109.46693 * 60.00725 * 15 13 12 41 41 H 1.09000 * 109.46665 * 180.02562 * 15 13 12 42 42 H 1.08994 * 109.47627 * 300.00039 * 15 13 12 43 43 H 0.97002 * 119.99538 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2007 1.2323 0.4247 5 6 1.3894 2.5515 0.2057 6 6 1.9616 2.2206 -1.1743 7 6 3.1519 3.0487 -1.6625 8 6 0.9783 1.7751 -2.2584 9 16 2.2930 -1.4342 -0.0006 10 8 1.3969 -2.3559 -0.6063 11 8 3.5395 -1.1190 -0.6057 12 6 2.5192 -1.8269 1.7559 13 6 3.2818 -3.1466 1.8893 14 6 2.4860 -4.2659 1.2148 15 6 4.6493 -3.0158 1.2156 16 6 3.4692 -3.4732 3.3484 17 1 3.0714 -2.8131 4.1049 18 6 4.1487 -4.6147 3.7177 19 7 4.0713 -5.0550 4.9545 20 14 5.1793 -5.5358 2.4611 21 1 6.5270 -4.9179 2.3776 22 1 5.3106 -6.9563 2.8741 23 1 4.5194 -5.4656 1.1326 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5138 27 1 0.3126 2.4517 0.3414 28 1 1.8611 3.3591 0.7656 29 1 3.9495 2.3812 -1.9887 30 1 2.8396 3.6770 -2.4967 31 1 3.5144 3.6781 -0.8498 32 1 -0.0044 1.6162 -1.8146 33 1 0.9096 2.5461 -3.0258 34 1 1.3289 0.8456 -2.7071 35 1 3.0865 -1.0297 2.2363 36 1 1.5450 -1.9197 2.2358 37 1 2.5049 -4.1248 0.1341 38 1 2.9317 -5.2291 1.4631 39 1 1.4546 -4.2412 1.5665 40 1 5.2162 -2.2184 1.6962 41 1 5.1923 -3.9561 1.3103 42 1 4.5134 -2.7798 0.1602 43 1 4.5491 -5.8583 5.2141 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451473239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:49 Heat of formation + Delta-G solvation = -27.400392 kcal Electronic energy + Delta-G solvation = -22977.675883 eV Core-core repulsion = 19766.087182 eV Total energy + Delta-G solvation = -3211.588701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.19659 -36.76091 -36.70431 -35.46644 -34.05567 -31.95190 -29.20480 -27.75360 -27.35164 -26.47351 -26.37563 -25.01951 -21.66508 -19.76455 -19.48104 -18.36104 -17.61099 -16.23108 -16.08230 -15.79797 -15.29304 -14.84793 -14.72584 -13.89980 -13.84752 -13.42501 -13.16776 -13.05890 -12.90436 -12.76517 -12.56846 -12.41425 -12.21821 -12.13582 -11.73875 -11.59970 -11.56667 -11.50047 -11.15325 -11.03051 -10.97186 -10.90659 -10.70987 -10.17660 -10.06655 -9.94610 -9.93618 -9.07838 -8.78329 -8.57437 -8.43843 -6.20027 -4.17331 0.65092 2.89438 3.24932 3.34251 3.38328 3.59760 4.23775 4.33590 4.38218 4.60641 4.62057 4.71698 4.85000 4.98977 5.09681 5.35350 5.36388 5.46250 5.51632 5.54280 5.58077 5.60408 5.74812 5.80791 5.84406 5.86568 5.98597 6.07603 6.10832 6.21339 6.25899 6.31818 6.42741 6.47845 6.59687 6.72979 6.86491 7.12366 7.30453 7.61908 8.38338 8.82771 9.44032 10.92525 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030532 B = 0.004951 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.844075 B = 5654.570864 C = 5700.388919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.980 5.980 3 C 0.097 3.903 4 H 0.134 0.866 5 C -0.179 4.179 6 C -0.139 4.139 7 C -0.115 4.115 8 C -0.115 4.115 9 S 2.592 3.408 10 O -0.959 6.959 11 O -0.957 6.957 12 C -0.575 4.575 13 C 0.054 3.946 14 C -0.170 4.170 15 C -0.181 4.181 16 C -0.508 4.508 17 H 0.078 0.922 18 C 0.078 3.922 19 N -0.889 5.889 20 Si 0.873 3.127 21 H -0.280 1.280 22 H -0.300 1.300 23 H -0.246 1.246 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 14.789 -10.608 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.813 5.813 3 C -0.011 4.011 4 H 0.151 0.849 5 C -0.217 4.217 6 C -0.142 4.142 7 C -0.173 4.173 8 C -0.172 4.172 9 S 2.690 3.310 10 O -0.949 6.949 11 O -0.948 6.948 12 C -0.708 4.708 13 C 0.051 3.949 14 C -0.227 4.227 15 C -0.238 4.238 16 C -0.546 4.546 17 H 0.096 0.904 18 C -0.126 4.126 19 N -0.525 5.525 20 Si 0.705 3.295 21 H -0.208 1.208 22 H -0.229 1.229 23 H -0.172 1.172 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.926 14.176 -11.266 19.052 hybrid contribution 0.505 -0.346 0.304 0.683 sum -5.422 13.830 -10.961 18.461 Atomic orbital electron populations 1.21643 0.79035 1.03103 1.02237 1.57272 1.14546 1.20136 1.89354 1.21572 0.96383 0.80696 1.02427 0.84879 1.23645 1.00543 0.98330 0.99209 1.22011 0.99436 1.02308 0.90400 1.21362 0.96178 0.98749 1.00995 1.21395 0.97699 1.01062 0.97021 1.05799 0.73702 0.72197 0.79258 1.93557 1.65009 1.61312 1.75044 1.93539 1.43413 1.82720 1.75092 1.30424 1.10118 1.08831 1.21385 1.18238 0.90358 0.87456 0.98842 1.22677 1.00998 1.01212 0.97859 1.22816 0.99689 1.01883 0.99411 1.20647 1.37112 1.08581 0.88301 0.90416 1.24960 0.96146 0.96278 0.95181 1.69934 1.41416 1.23043 1.18123 0.87450 0.81332 0.77909 0.82826 1.20781 1.22869 1.17209 0.92265 0.90764 0.90845 0.88041 0.88022 0.91654 0.92211 0.92346 0.92051 0.92450 0.92233 0.85734 0.85689 0.94472 0.91440 0.92369 0.91787 0.93010 0.93225 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 8.53 59.85 0.51 1.45 16 2 N -0.98 -13.26 3.13 -114.61 -0.36 -13.62 16 3 C 0.10 1.16 5.72 -67.93 -0.39 0.78 16 4 H 0.13 1.59 7.97 -51.93 -0.41 1.18 16 5 C -0.18 -1.64 9.10 -26.73 -0.24 -1.89 16 6 C -0.14 -1.47 2.70 -154.51 -0.42 -1.88 16 7 C -0.12 -1.08 9.85 37.16 0.37 -0.71 16 8 C -0.11 -1.18 8.58 37.15 0.32 -0.86 16 9 S 2.59 45.53 4.42 -107.50 -0.47 45.06 16 10 O -0.96 -18.83 14.94 -57.54 -0.86 -19.69 16 11 O -0.96 -18.74 14.77 -57.54 -0.85 -19.59 16 12 C -0.57 -10.65 5.10 37.16 0.19 -10.46 16 13 C 0.05 1.24 0.52 -155.66 -0.08 1.16 16 14 C -0.17 -3.86 6.95 37.16 0.26 -3.60 16 15 C -0.18 -4.09 7.22 37.16 0.27 -3.82 16 16 C -0.51 -13.69 8.62 -34.44 -0.30 -13.99 16 17 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.08 2.18 5.31 -17.82 -0.09 2.09 16 19 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 20 Si 0.87 21.59 22.79 -169.99 -3.87 17.71 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.25 -5.72 4.67 56.52 0.26 -5.45 16 24 H 0.06 0.62 6.40 -51.93 -0.33 0.29 16 25 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 26 H 0.07 0.62 5.80 -51.93 -0.30 0.32 16 27 H 0.10 0.84 5.93 -51.93 -0.31 0.53 16 28 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 31 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 32 H 0.06 0.57 5.64 -51.93 -0.29 0.27 16 33 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.12 2.10 8.14 -51.92 -0.42 1.67 16 36 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 37 H 0.04 0.79 6.21 -51.93 -0.32 0.47 16 38 H 0.07 1.57 4.32 -51.93 -0.22 1.35 16 39 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.05 1.21 2.28 -51.93 -0.12 1.09 16 42 H 0.05 1.05 5.46 -51.93 -0.28 0.77 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -32.50 325.79 -7.22 -39.72 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.88 Total: 2.93 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 0.39 Total: -31.74 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.42 Total: -39.31 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.71 Total: -39.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -3.87 Total: 17.71 kcal Atomic # 16 Polarization: 45.53 SS G_CDS: -0.47 Total: 45.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.50 -7.22 -39.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451473239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.319 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds