Wall clock time and date at job start Tue Mar 31 2020 07:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99984 * 2 1 4 4 H 1.09000 * 115.54737 * 154.41353 * 3 2 1 5 5 C 1.53001 * 117.51659 * 8.71709 * 3 2 1 6 6 C 1.52992 * 117.49878 * 300.08401 * 3 2 1 7 7 C 1.53004 * 117.49820 * 214.99959 * 6 3 2 8 8 C 1.52993 * 117.50278 * 0.02667 * 6 3 2 9 9 S 1.65604 * 119.99831 * 180.02562 * 2 1 3 10 10 O 1.42103 * 104.27819 * 26.07184 * 9 2 1 11 11 O 1.42097 * 104.27815 * 153.92965 * 9 2 1 12 12 C 1.81406 * 104.44626 * 270.00124 * 9 2 1 13 13 C 1.52999 * 109.47061 * 180.02562 * 12 9 2 14 14 C 1.53004 * 109.46804 * 300.00052 * 13 12 9 15 15 C 1.53003 * 109.46958 * 59.99590 * 13 12 9 16 16 C 1.50692 * 109.47289 * 180.02562 * 13 12 9 17 17 H 1.07999 * 119.99967 * 0.83011 * 16 13 12 18 18 C 1.37879 * 120.00373 * 180.83572 * 16 13 12 19 19 N 1.31508 * 120.00176 * 194.57625 * 18 16 13 20 20 Si 1.86802 * 119.99570 * 14.57902 * 18 16 13 21 21 H 1.48497 * 109.47494 * 84.45224 * 20 18 16 22 22 H 1.48512 * 109.46923 * 204.45535 * 20 18 16 23 23 H 1.48506 * 109.47059 * 324.45151 * 20 18 16 24 24 H 1.09006 * 109.46727 * 90.00016 * 1 2 3 25 25 H 1.09000 * 109.47400 * 209.99433 * 1 2 3 26 26 H 1.09000 * 109.47002 * 330.00176 * 1 2 3 27 27 H 1.08992 * 117.50094 * 0.02562 * 5 3 2 28 28 H 1.09001 * 117.49310 * 145.03204 * 5 3 2 29 29 H 1.09001 * 109.46811 * 60.00714 * 7 6 3 30 30 H 1.09004 * 109.46743 * 180.02562 * 7 6 3 31 31 H 1.08997 * 109.47347 * 300.00547 * 7 6 3 32 32 H 1.08997 * 109.47438 * 59.99717 * 8 6 3 33 33 H 1.09001 * 109.47771 * 179.97438 * 8 6 3 34 34 H 1.08997 * 109.47033 * 299.99948 * 8 6 3 35 35 H 1.08999 * 109.46889 * 300.00168 * 12 9 2 36 36 H 1.08996 * 109.47095 * 59.99954 * 12 9 2 37 37 H 1.08999 * 109.47582 * 70.23771 * 14 13 12 38 38 H 1.09002 * 109.46871 * 190.22798 * 14 13 12 39 39 H 1.08999 * 109.47492 * 310.22879 * 14 13 12 40 40 H 1.08999 * 109.46693 * 60.00725 * 15 13 12 41 41 H 1.09000 * 109.46665 * 180.02562 * 15 13 12 42 42 H 1.08994 * 109.47627 * 300.00039 * 15 13 12 43 43 H 0.97002 * 119.99538 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2007 1.2323 0.4247 5 6 1.3894 2.5515 0.2057 6 6 1.9616 2.2206 -1.1743 7 6 3.1519 3.0487 -1.6625 8 6 0.9783 1.7751 -2.2584 9 16 2.2930 -1.4342 -0.0006 10 8 1.3969 -2.3559 -0.6063 11 8 3.5395 -1.1190 -0.6057 12 6 2.5192 -1.8269 1.7559 13 6 3.2818 -3.1466 1.8893 14 6 2.4860 -4.2659 1.2148 15 6 4.6493 -3.0158 1.2156 16 6 3.4692 -3.4732 3.3484 17 1 3.0714 -2.8131 4.1049 18 6 4.1487 -4.6147 3.7177 19 7 4.0713 -5.0550 4.9545 20 14 5.1793 -5.5358 2.4611 21 1 6.5270 -4.9179 2.3776 22 1 5.3106 -6.9563 2.8741 23 1 4.5194 -5.4656 1.1326 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5138 27 1 0.3126 2.4517 0.3414 28 1 1.8611 3.3591 0.7656 29 1 3.9495 2.3812 -1.9887 30 1 2.8396 3.6770 -2.4967 31 1 3.5144 3.6781 -0.8498 32 1 -0.0044 1.6162 -1.8146 33 1 0.9096 2.5461 -3.0258 34 1 1.3289 0.8456 -2.7071 35 1 3.0865 -1.0297 2.2363 36 1 1.5450 -1.9197 2.2358 37 1 2.5049 -4.1248 0.1341 38 1 2.9317 -5.2291 1.4631 39 1 1.4546 -4.2412 1.5665 40 1 5.2162 -2.2184 1.6962 41 1 5.1923 -3.9561 1.3103 42 1 4.5134 -2.7798 0.1602 43 1 4.5491 -5.8583 5.2141 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451473239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:49 Heat of formation + Delta-G solvation = -49.885933 kcal Electronic energy + Delta-G solvation = -22978.650929 eV Core-core repulsion = 19766.087182 eV Total energy + Delta-G solvation = -3212.563747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03508 -38.52216 -38.19583 -36.94762 -35.01533 -34.05916 -29.98687 -29.08295 -28.35878 -28.17809 -27.38280 -27.08014 -22.61335 -21.48865 -20.43374 -19.54270 -18.91941 -18.15883 -17.43548 -17.19170 -16.96603 -16.07800 -15.70235 -15.18125 -15.02253 -14.81648 -14.74944 -14.62403 -14.21322 -14.13466 -13.82336 -13.60123 -13.42173 -13.24733 -13.07556 -12.94222 -12.76884 -12.72991 -12.62890 -12.53606 -12.44878 -12.02558 -11.92711 -11.88457 -11.83450 -11.57213 -10.95270 -10.74778 -10.70433 -10.49494 -9.50249 -8.36609 -6.36103 -0.72593 1.28577 1.33682 1.41490 1.68523 2.27893 2.72799 2.90826 2.97772 3.15784 3.63733 3.74849 3.84324 3.91422 3.94054 4.08084 4.22060 4.25110 4.47250 4.55873 4.56905 4.63850 4.66415 4.73227 4.76601 4.83778 4.86293 4.91095 5.03405 5.08146 5.10076 5.11071 5.12728 5.28954 5.33277 5.35142 5.49078 5.49944 5.60852 5.67814 6.24653 6.66480 7.28250 8.79293 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030532 B = 0.004951 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.844075 B = 5654.570864 C = 5700.388919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.972 5.972 3 C 0.061 3.939 4 H 0.128 0.872 5 C -0.151 4.151 6 C -0.145 4.145 7 C -0.117 4.117 8 C -0.117 4.117 9 S 2.613 3.387 10 O -0.981 6.981 11 O -0.979 6.979 12 C -0.583 4.583 13 C 0.044 3.956 14 C -0.174 4.174 15 C -0.186 4.186 16 C -0.504 4.504 17 H 0.049 0.951 18 C 0.028 3.972 19 N -0.935 5.935 20 Si 0.916 3.084 21 H -0.275 1.275 22 H -0.304 1.304 23 H -0.223 1.223 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 16.766 -12.091 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.807 5.807 3 C -0.046 4.046 4 H 0.146 0.854 5 C -0.190 4.190 6 C -0.147 4.147 7 C -0.174 4.174 8 C -0.175 4.175 9 S 2.711 3.289 10 O -0.971 6.971 11 O -0.970 6.970 12 C -0.714 4.714 13 C 0.042 3.958 14 C -0.231 4.231 15 C -0.243 4.243 16 C -0.543 4.543 17 H 0.067 0.933 18 C -0.171 4.171 19 N -0.574 5.574 20 Si 0.745 3.255 21 H -0.202 1.202 22 H -0.232 1.232 23 H -0.148 1.148 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.765 16.155 -12.756 21.667 hybrid contribution 0.682 -0.820 0.778 1.320 sum -6.083 15.335 -11.978 20.387 Atomic orbital electron populations 1.21948 0.77345 1.04680 1.03208 1.56872 1.15465 1.19345 1.89057 1.21842 0.97013 0.80855 1.04863 0.85404 1.23761 1.01102 0.96440 0.97693 1.22148 1.00013 1.01723 0.90865 1.21394 0.95373 0.98630 1.01996 1.21435 0.98081 1.00467 0.97468 1.04874 0.73188 0.72709 0.78132 1.93522 1.65417 1.63052 1.75127 1.93502 1.44985 1.83300 1.75164 1.30438 1.10367 1.06969 1.23644 1.18221 0.91498 0.89918 0.96203 1.22684 1.01306 1.00500 0.98659 1.22839 0.99316 1.01783 1.00336 1.20907 1.35667 1.07532 0.90151 0.93266 1.25654 0.97340 0.97502 0.96626 1.70049 1.43119 1.24050 1.20141 0.86726 0.80251 0.76519 0.81989 1.20165 1.23225 1.14768 0.91645 0.90800 0.87794 0.86598 0.86191 0.93298 0.90874 0.91057 0.90962 0.90918 0.94528 0.84468 0.84535 0.93237 0.92452 0.91673 0.91114 0.93752 0.91894 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 8.53 127.77 1.09 2.49 16 2 N -0.97 -24.27 3.13 -516.52 -1.61 -25.89 16 3 C 0.06 1.33 5.72 44.99 0.26 1.59 16 4 H 0.13 2.87 7.97 -2.39 -0.02 2.85 16 5 C -0.15 -2.21 9.10 30.60 0.28 -1.94 16 6 C -0.14 -2.67 2.70 -52.18 -0.14 -2.81 16 7 C -0.12 -1.91 9.85 71.98 0.71 -1.20 16 8 C -0.12 -2.13 8.58 71.98 0.62 -1.51 16 9 S 2.61 88.10 4.42 -56.49 -0.25 87.85 16 10 O -0.98 -37.15 14.94 -127.65 -1.91 -39.06 16 11 O -0.98 -37.20 14.77 -127.65 -1.88 -39.08 16 12 C -0.58 -20.97 5.10 71.98 0.37 -20.61 16 13 C 0.04 1.99 0.52 -52.93 -0.03 1.97 16 14 C -0.17 -7.71 6.95 71.98 0.50 -7.21 16 15 C -0.19 -8.16 7.22 71.98 0.52 -7.64 16 16 C -0.50 -27.42 8.62 25.60 0.22 -27.20 16 17 H 0.05 2.89 7.99 -2.91 -0.02 2.86 16 18 C 0.03 1.57 5.31 84.66 0.45 2.02 16 19 N -0.93 -56.97 13.96 21.45 0.30 -56.67 16 20 Si 0.92 44.23 22.79 68.60 1.56 45.79 16 21 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 23 H -0.22 -9.89 4.67 99.48 0.46 -9.43 16 24 H 0.07 1.20 6.40 -2.38 -0.02 1.19 16 25 H 0.07 1.45 7.79 -2.39 -0.02 1.43 16 26 H 0.10 1.36 5.80 -2.39 -0.01 1.34 16 27 H 0.12 1.37 5.93 -2.39 -0.01 1.35 16 28 H 0.12 1.35 8.05 -2.39 -0.02 1.33 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.98 7.92 -2.39 -0.02 0.97 16 31 H 0.07 0.96 7.90 -2.39 -0.02 0.94 16 32 H 0.07 1.11 5.64 -2.39 -0.01 1.10 16 33 H 0.07 1.07 7.92 -2.39 -0.02 1.05 16 34 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 36 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 37 H 0.05 2.04 6.21 -2.39 -0.01 2.03 16 38 H 0.06 2.61 4.32 -2.39 -0.01 2.60 16 39 H 0.06 2.72 8.11 -2.39 -0.02 2.70 16 40 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.04 1.99 2.28 -2.39 -0.01 1.99 16 42 H 0.06 2.58 5.46 -2.39 -0.01 2.57 16 43 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -70.04 325.79 1.80 -68.24 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.75 Total: 20.86 kcal Atomic # 6 Polarization: -66.88 SS G_CDS: 4.84 Total: -62.04 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.31 Total: -82.56 kcal Atomic # 8 Polarization: -74.35 SS G_CDS: -3.79 Total: -78.14 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.56 Total: 45.79 kcal Atomic # 16 Polarization: 88.10 SS G_CDS: -0.25 Total: 87.85 kcal Total: -70.04 1.80 -68.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451473239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.351 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds