Wall clock time and date at job start Tue Mar 31 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38447 * 119.83031 * 2 1 4 4 C 1.37850 * 120.17730 * 179.97438 * 3 2 1 5 5 C 1.39913 * 119.82158 * 0.24716 * 4 3 2 6 6 C 1.47395 * 120.17150 * 179.75118 * 5 4 3 7 7 O 1.21358 * 119.99954 * 353.12801 * 6 5 4 8 8 C 1.49300 * 119.99843 * 173.12969 * 6 5 4 9 9 O 1.21362 * 119.99763 * 5.36723 * 8 6 5 10 10 N 1.34772 * 119.99803 * 185.37373 * 8 6 5 11 11 C 1.46500 * 119.99854 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46963 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47137 * 299.99850 * 12 11 10 14 14 C 1.52993 * 109.47338 * 60.00211 * 12 11 10 15 15 C 1.50702 * 109.47096 * 180.02562 * 12 11 10 16 16 H 1.08006 * 119.99872 * 0.49416 * 15 12 11 17 17 C 1.37879 * 120.00339 * 180.49143 * 15 12 11 18 18 N 1.31510 * 120.00241 * 193.06540 * 17 15 12 19 19 Si 1.86799 * 119.99725 * 13.06267 * 17 15 12 20 20 H 1.48505 * 109.46802 * 84.67990 * 19 17 15 21 21 H 1.48497 * 109.47230 * 204.67907 * 19 17 15 22 22 H 1.48497 * 109.47374 * 324.68555 * 19 17 15 23 23 C 1.39916 * 119.65451 * 359.49699 * 5 4 3 24 24 C 1.37856 * 119.81760 * 0.50727 * 23 5 4 25 25 H 1.09000 * 109.47062 * 90.00099 * 1 2 3 26 26 H 1.08999 * 109.47288 * 210.00711 * 1 2 3 27 27 H 1.09003 * 109.46431 * 330.00169 * 1 2 3 28 28 H 1.08002 * 119.90800 * 359.94892 * 3 2 1 29 29 H 1.08002 * 120.09020 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00222 * 359.97438 * 10 8 6 31 31 H 1.08999 * 109.47055 * 299.99832 * 11 10 8 32 32 H 1.09005 * 109.46865 * 60.00029 * 11 10 8 33 33 H 1.08994 * 109.46983 * 68.61630 * 13 12 11 34 34 H 1.09000 * 109.47357 * 188.61289 * 13 12 11 35 35 H 1.08994 * 109.47360 * 308.61601 * 13 12 11 36 36 H 1.08999 * 109.47292 * 59.99713 * 14 12 11 37 37 H 1.09002 * 109.47265 * 179.97438 * 14 12 11 38 38 H 1.09001 * 109.47117 * 299.99407 * 14 12 11 39 39 H 0.96999 * 120.00070 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.08878 * 180.23221 * 23 5 4 41 41 H 1.08002 * 119.90555 * 179.72525 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2010 0.0000 4 6 3.5742 1.2094 0.0005 5 6 4.2773 -0.0002 -0.0042 6 6 5.7512 -0.0003 -0.0092 7 8 6.3576 1.0434 -0.1350 8 6 6.4982 -1.2843 0.1405 9 8 5.8953 -2.3373 0.1684 10 7 7.8418 -1.2740 0.2448 11 6 8.5747 -2.5339 0.3923 12 6 10.0738 -2.2437 0.4880 13 6 10.5373 -1.5298 -0.7834 14 6 10.3441 -1.3515 1.7012 15 6 10.8278 -3.5397 0.6391 16 1 10.2920 -4.4773 0.6562 17 6 12.2017 -3.5286 0.7553 18 7 12.8813 -4.6474 0.6292 19 14 13.0975 -1.9244 1.0919 20 1 13.1072 -1.6601 2.5532 21 1 14.4942 -2.0243 0.5976 22 1 12.4032 -0.8135 0.3927 23 6 3.5740 -1.2098 0.0013 24 6 2.1955 -1.2012 0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3632 0.8901 0.5138 28 1 1.6514 2.1339 -0.0008 29 1 4.1100 2.1471 0.0001 30 1 8.3236 -0.4325 0.2223 31 1 8.2442 -3.0427 1.2978 32 1 8.3825 -3.1694 -0.4723 33 1 10.1085 -0.5283 -0.8146 34 1 11.6251 -1.4594 -0.7847 35 1 10.2087 -2.0931 -1.6567 36 1 10.0139 -1.8601 2.6070 37 1 11.4122 -1.1451 1.7696 38 1 9.7989 -0.4141 1.5915 39 1 13.8479 -4.6395 0.7106 40 1 4.1097 -2.1475 0.0015 41 1 1.6512 -2.1340 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457985261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:23 Heat of formation + Delta-G solvation = -29.594718 kcal Electronic energy + Delta-G solvation = -22410.162565 eV Core-core repulsion = 19063.034760 eV Total energy + Delta-G solvation = -3347.127805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -40.73350 -39.11845 -38.28271 -36.87255 -33.65088 -32.93171 -31.53785 -31.18539 -28.33334 -26.71144 -26.40193 -25.14636 -24.07985 -22.80851 -21.60732 -20.05041 -19.25684 -17.69485 -17.05546 -16.19332 -15.81575 -15.67029 -15.41208 -15.03352 -14.96551 -14.24773 -14.09860 -14.01794 -13.90540 -13.57738 -13.08436 -12.95006 -12.67828 -12.54254 -12.25841 -12.15748 -12.10232 -11.84592 -11.67486 -11.42189 -10.96793 -10.50894 -10.36080 -10.19720 -10.07462 -9.30436 -9.16627 -9.10473 -8.95536 -8.78325 -8.72361 -8.50130 -6.18048 -4.16435 0.24217 1.22640 1.60123 2.92777 3.09077 3.22491 3.30281 3.37212 3.67075 4.31987 4.33013 4.50617 4.61064 4.77970 4.82607 5.01215 5.12797 5.20863 5.24425 5.42513 5.52243 5.66297 5.74490 5.87464 5.95987 6.00109 6.11314 6.16586 6.29831 6.31299 6.37391 6.46369 6.54754 6.59664 6.64632 6.75993 6.86856 6.94197 7.14838 7.36487 7.64019 7.67038 8.18801 8.40599 8.85945 9.45369 10.94815 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.041265 B = 0.003162 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.376011 B = 8852.158031 C = 9306.676119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.051 4.051 3 C -0.145 4.145 4 C -0.053 4.053 5 C -0.174 4.174 6 C 0.392 3.608 7 O -0.428 6.428 8 C 0.477 3.523 9 O -0.518 6.518 10 N -0.689 5.689 11 C 0.136 3.864 12 C 0.028 3.972 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.514 4.514 16 H 0.078 0.922 17 C 0.077 3.923 18 N -0.890 5.890 19 Si 0.881 3.119 20 H -0.285 1.285 21 H -0.304 1.304 22 H -0.245 1.245 23 C -0.059 4.059 24 C -0.143 4.143 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.407 0.593 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.030 0.970 39 H 0.265 0.735 40 H 0.174 0.826 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.871 11.431 -1.254 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.052 4.052 3 C -0.163 4.163 4 C -0.071 4.071 5 C -0.175 4.175 6 C 0.266 3.734 7 O -0.300 6.300 8 C 0.260 3.740 9 O -0.397 6.397 10 N -0.341 5.341 11 C 0.014 3.986 12 C 0.027 3.973 13 C -0.206 4.206 14 C -0.206 4.206 15 C -0.552 4.552 16 H 0.096 0.904 17 C -0.126 4.126 18 N -0.527 5.527 19 Si 0.713 3.287 20 H -0.213 1.213 21 H -0.233 1.233 22 H -0.171 1.171 23 C -0.076 4.076 24 C -0.161 4.161 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.244 0.756 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.191 0.809 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.752 11.127 -1.302 23.583 hybrid contribution 0.907 1.182 0.286 1.518 sum -19.845 12.309 -1.016 23.374 Atomic orbital electron populations 1.20894 0.90968 1.03131 1.02677 1.20323 0.96338 0.93385 0.95111 1.20947 0.93757 0.97779 1.03812 1.21384 0.94160 0.97456 0.94111 1.20101 0.92807 0.94911 1.09722 1.22707 0.89634 0.88589 0.72504 1.90557 1.71252 1.34417 1.33823 1.20581 0.83805 0.90217 0.79439 1.90507 1.67111 1.32355 1.49708 1.46368 1.05772 1.12762 1.69186 1.21742 0.92021 0.82906 1.01893 1.18740 0.90566 0.96238 0.91781 1.22390 1.01908 0.97186 0.99091 1.22347 0.99834 0.98050 1.00379 1.20681 0.91513 0.91260 1.51734 0.90428 1.24958 0.97354 0.96118 0.94198 1.69934 1.07458 1.27024 1.48278 0.87391 0.77535 0.85340 0.78439 1.21265 1.23252 1.17115 1.22731 0.94362 0.99943 0.90584 1.21179 0.94353 0.97673 1.02916 0.90683 0.91120 0.91284 0.85483 0.84934 0.75633 0.91157 0.91057 0.95770 0.92092 0.93255 0.92643 0.93900 0.95110 0.92486 0.80925 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.00 36.01 0.36 -0.35 16 2 C -0.05 -0.46 5.89 -104.47 -0.62 -1.07 16 3 C -0.14 -1.33 9.68 -39.65 -0.38 -1.71 16 4 C -0.05 -0.58 9.60 -39.10 -0.38 -0.96 16 5 C -0.17 -2.25 5.88 -104.91 -0.62 -2.87 16 6 C 0.39 5.69 7.17 -31.25 -0.22 5.46 16 7 O -0.43 -6.56 16.51 5.49 0.09 -6.47 16 8 C 0.48 7.72 7.84 -11.66 -0.09 7.63 16 9 O -0.52 -9.09 13.43 5.49 0.07 -9.01 16 10 N -0.69 -11.53 4.99 -60.78 -0.30 -11.84 16 11 C 0.14 2.63 4.49 -4.04 -0.02 2.61 16 12 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 13 C -0.15 -3.03 7.52 37.16 0.28 -2.75 16 14 C -0.15 -3.02 7.59 37.15 0.28 -2.74 16 15 C -0.51 -13.56 8.62 -34.44 -0.30 -13.85 16 16 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 17 C 0.08 2.11 5.34 -17.82 -0.10 2.01 16 18 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 19 Si 0.88 20.90 22.77 -169.99 -3.87 17.03 16 20 H -0.28 -6.75 7.08 56.52 0.40 -6.35 16 21 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.25 -5.32 4.60 56.52 0.26 -5.06 16 23 C -0.06 -0.73 9.30 -39.09 -0.36 -1.09 16 24 C -0.14 -1.44 9.68 -39.64 -0.38 -1.83 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 28 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.13 1.35 7.67 -52.49 -0.40 0.94 16 30 H 0.41 6.44 5.73 -40.82 -0.23 6.21 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.02 0.42 7.11 -51.93 -0.37 0.05 16 34 H 0.06 1.32 4.05 -51.93 -0.21 1.11 16 35 H 0.05 0.99 8.13 -51.93 -0.42 0.56 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.92 2.41 -51.93 -0.13 0.79 16 38 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.17 2.35 4.86 -52.51 -0.25 2.10 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -29.62 327.50 -6.37 -35.99 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.45 Total: 5.96 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.62 Total: -11.00 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.47 Total: -37.43 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.16 Total: -15.49 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -3.87 Total: 17.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.62 -6.37 -35.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457985261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.393 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds