Wall clock time and date at job start Tue Mar 31 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38447 * 119.83031 * 2 1 4 4 C 1.37850 * 120.17730 * 179.97438 * 3 2 1 5 5 C 1.39913 * 119.82158 * 0.24716 * 4 3 2 6 6 C 1.47395 * 120.17150 * 179.75118 * 5 4 3 7 7 O 1.21358 * 119.99954 * 353.12801 * 6 5 4 8 8 C 1.49300 * 119.99843 * 173.12969 * 6 5 4 9 9 O 1.21362 * 119.99763 * 5.36723 * 8 6 5 10 10 N 1.34772 * 119.99803 * 185.37373 * 8 6 5 11 11 C 1.46500 * 119.99854 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46963 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47137 * 299.99850 * 12 11 10 14 14 C 1.52993 * 109.47338 * 60.00211 * 12 11 10 15 15 C 1.50702 * 109.47096 * 180.02562 * 12 11 10 16 16 H 1.08006 * 119.99872 * 0.49416 * 15 12 11 17 17 C 1.37879 * 120.00339 * 180.49143 * 15 12 11 18 18 N 1.31510 * 120.00241 * 193.06540 * 17 15 12 19 19 Si 1.86799 * 119.99725 * 13.06267 * 17 15 12 20 20 H 1.48505 * 109.46802 * 84.67990 * 19 17 15 21 21 H 1.48497 * 109.47230 * 204.67907 * 19 17 15 22 22 H 1.48497 * 109.47374 * 324.68555 * 19 17 15 23 23 C 1.39916 * 119.65451 * 359.49699 * 5 4 3 24 24 C 1.37856 * 119.81760 * 0.50727 * 23 5 4 25 25 H 1.09000 * 109.47062 * 90.00099 * 1 2 3 26 26 H 1.08999 * 109.47288 * 210.00711 * 1 2 3 27 27 H 1.09003 * 109.46431 * 330.00169 * 1 2 3 28 28 H 1.08002 * 119.90800 * 359.94892 * 3 2 1 29 29 H 1.08002 * 120.09020 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00222 * 359.97438 * 10 8 6 31 31 H 1.08999 * 109.47055 * 299.99832 * 11 10 8 32 32 H 1.09005 * 109.46865 * 60.00029 * 11 10 8 33 33 H 1.08994 * 109.46983 * 68.61630 * 13 12 11 34 34 H 1.09000 * 109.47357 * 188.61289 * 13 12 11 35 35 H 1.08994 * 109.47360 * 308.61601 * 13 12 11 36 36 H 1.08999 * 109.47292 * 59.99713 * 14 12 11 37 37 H 1.09002 * 109.47265 * 179.97438 * 14 12 11 38 38 H 1.09001 * 109.47117 * 299.99407 * 14 12 11 39 39 H 0.96999 * 120.00070 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.08878 * 180.23221 * 23 5 4 41 41 H 1.08002 * 119.90555 * 179.72525 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2010 0.0000 4 6 3.5742 1.2094 0.0005 5 6 4.2773 -0.0002 -0.0042 6 6 5.7512 -0.0003 -0.0092 7 8 6.3576 1.0434 -0.1350 8 6 6.4982 -1.2843 0.1405 9 8 5.8953 -2.3373 0.1684 10 7 7.8418 -1.2740 0.2448 11 6 8.5747 -2.5339 0.3923 12 6 10.0738 -2.2437 0.4880 13 6 10.5373 -1.5298 -0.7834 14 6 10.3441 -1.3515 1.7012 15 6 10.8278 -3.5397 0.6391 16 1 10.2920 -4.4773 0.6562 17 6 12.2017 -3.5286 0.7553 18 7 12.8813 -4.6474 0.6292 19 14 13.0975 -1.9244 1.0919 20 1 13.1072 -1.6601 2.5532 21 1 14.4942 -2.0243 0.5976 22 1 12.4032 -0.8135 0.3927 23 6 3.5740 -1.2098 0.0013 24 6 2.1955 -1.2012 0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3632 0.8901 0.5138 28 1 1.6514 2.1339 -0.0008 29 1 4.1100 2.1471 0.0001 30 1 8.3236 -0.4325 0.2223 31 1 8.2442 -3.0427 1.2978 32 1 8.3825 -3.1694 -0.4723 33 1 10.1085 -0.5283 -0.8146 34 1 11.6251 -1.4594 -0.7847 35 1 10.2087 -2.0931 -1.6567 36 1 10.0139 -1.8601 2.6070 37 1 11.4122 -1.1451 1.7696 38 1 9.7989 -0.4141 1.5915 39 1 13.8479 -4.6395 0.7106 40 1 4.1097 -2.1475 0.0015 41 1 1.6512 -2.1340 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457985261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:17 Heat of formation + Delta-G solvation = -48.341758 kcal Electronic energy + Delta-G solvation = -22410.975498 eV Core-core repulsion = 19063.034760 eV Total energy + Delta-G solvation = -3347.940738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.89498 -40.17613 -39.38404 -38.48693 -35.18987 -33.83745 -33.42289 -31.98083 -29.23962 -28.10315 -27.96650 -27.06725 -25.30612 -23.62282 -22.59576 -21.30545 -20.89051 -18.96995 -18.20227 -18.01020 -17.22819 -16.96215 -16.69015 -16.16469 -16.09127 -15.53194 -15.30803 -14.93184 -14.87452 -14.63417 -14.52901 -14.38418 -14.36423 -14.02955 -13.82114 -13.05006 -13.01974 -12.86735 -12.72455 -12.57750 -12.40788 -12.22861 -11.96324 -11.84386 -11.79052 -11.09977 -10.65224 -10.50385 -10.36324 -10.22270 -9.96573 -9.73963 -8.31298 -6.33292 -0.75748 0.43120 0.58171 1.35595 1.37340 1.49020 1.66277 1.93951 2.33391 2.79290 3.04426 3.10574 3.61299 3.89803 3.99314 3.99998 4.07631 4.27572 4.35141 4.36032 4.43094 4.68387 4.75621 4.77470 4.80459 4.83416 4.86576 4.89267 5.01927 5.04676 5.13714 5.23001 5.24020 5.32161 5.39933 5.46015 5.59726 5.66943 5.73489 5.81160 5.95750 6.25815 6.36472 6.70753 6.89744 7.31975 8.85420 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.041265 B = 0.003162 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.376011 B = 8852.158031 C = 9306.676119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.044 4.044 3 C -0.143 4.143 4 C -0.056 4.056 5 C -0.197 4.197 6 C 0.401 3.599 7 O -0.438 6.438 8 C 0.477 3.523 9 O -0.534 6.534 10 N -0.686 5.686 11 C 0.151 3.849 12 C 0.026 3.974 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.514 4.514 16 H 0.035 0.965 17 C 0.020 3.980 18 N -0.944 5.944 19 Si 0.936 3.064 20 H -0.281 1.281 21 H -0.314 1.314 22 H -0.205 1.205 23 C -0.074 4.074 24 C -0.149 4.149 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.158 0.842 29 H 0.140 0.860 30 H 0.414 0.586 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.036 0.964 38 H 0.066 0.934 39 H 0.265 0.735 40 H 0.155 0.845 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.396 14.802 -1.278 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.044 4.044 3 C -0.160 4.160 4 C -0.075 4.075 5 C -0.199 4.199 6 C 0.276 3.724 7 O -0.312 6.312 8 C 0.260 3.740 9 O -0.413 6.413 10 N -0.338 5.338 11 C 0.028 3.972 12 C 0.025 3.975 13 C -0.205 4.205 14 C -0.206 4.206 15 C -0.553 4.553 16 H 0.053 0.947 17 C -0.178 4.178 18 N -0.583 5.583 19 Si 0.766 3.234 20 H -0.209 1.209 21 H -0.244 1.244 22 H -0.129 1.129 23 C -0.092 4.092 24 C -0.167 4.167 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.175 0.825 29 H 0.158 0.842 30 H 0.252 0.748 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.172 0.828 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.318 14.525 -1.330 27.504 hybrid contribution 1.482 0.025 0.276 1.508 sum -21.836 14.550 -1.053 26.260 Atomic orbital electron populations 1.20982 0.88411 1.04393 1.03796 1.20739 0.98170 0.92716 0.92800 1.21329 0.93086 0.99229 1.02372 1.21558 0.95140 0.96873 0.93882 1.20050 0.91668 0.96015 1.12119 1.22542 0.90309 0.87318 0.72192 1.90545 1.71542 1.34213 1.34918 1.21030 0.83459 0.90973 0.78531 1.90525 1.67456 1.33348 1.49994 1.46164 1.06033 1.11882 1.69750 1.21312 0.91184 0.83917 1.00810 1.18677 0.91093 0.94316 0.93410 1.22321 1.01255 0.98915 0.97995 1.22289 0.99792 0.99277 0.99230 1.20975 0.91784 0.92140 1.50370 0.94679 1.25791 0.98330 0.99541 0.94126 1.70087 1.07708 1.29781 1.50749 0.86484 0.75778 0.82459 0.78696 1.20868 1.24367 1.12890 1.22598 0.95520 0.99065 0.92001 1.21420 0.93502 0.99256 1.02511 0.89422 0.90277 0.89714 0.82451 0.84213 0.74768 0.92252 0.92497 0.92261 0.93141 0.93607 0.92938 0.94604 0.91495 0.92631 0.82818 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.00 71.24 0.71 -0.22 16 2 C -0.04 -0.65 5.89 -19.76 -0.12 -0.77 16 3 C -0.14 -2.14 9.68 22.23 0.22 -1.93 16 4 C -0.06 -1.12 9.60 22.58 0.22 -0.91 16 5 C -0.20 -4.91 5.88 -20.05 -0.12 -5.02 16 6 C 0.40 11.29 7.17 27.66 0.20 11.49 16 7 O -0.44 -12.74 16.51 -3.27 -0.05 -12.80 16 8 C 0.48 15.24 7.84 87.22 0.68 15.93 16 9 O -0.53 -19.04 13.43 -3.29 -0.04 -19.08 16 10 N -0.69 -22.18 4.99 -464.57 -2.32 -24.50 16 11 C 0.15 5.84 4.49 86.38 0.39 6.23 16 12 C 0.03 1.11 0.50 -52.93 -0.03 1.08 16 13 C -0.15 -5.73 7.52 71.98 0.54 -5.19 16 14 C -0.15 -5.69 7.59 71.98 0.55 -5.14 16 15 C -0.51 -27.93 8.62 25.60 0.22 -27.71 16 16 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 17 C 0.02 1.12 5.34 84.66 0.45 1.57 16 18 N -0.94 -58.14 13.96 21.45 0.30 -57.84 16 19 Si 0.94 42.73 22.77 68.60 1.56 44.29 16 20 H -0.28 -12.60 7.08 99.48 0.70 -11.90 16 21 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 22 H -0.21 -8.04 4.60 99.48 0.46 -7.58 16 23 C -0.07 -1.79 9.30 22.59 0.21 -1.58 16 24 C -0.15 -2.73 9.68 22.23 0.22 -2.52 16 25 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 27 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 28 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 29 H 0.14 2.52 7.67 -2.91 -0.02 2.50 16 30 H 0.41 12.08 5.73 -92.71 -0.53 11.55 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.06 1.88 7.11 -2.39 -0.02 1.86 16 34 H 0.05 2.06 4.05 -2.39 -0.01 2.05 16 35 H 0.04 1.78 8.13 -2.39 -0.02 1.76 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.04 1.42 2.41 -2.39 -0.01 1.42 16 38 H 0.07 2.07 6.86 -2.39 -0.02 2.05 16 39 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.15 4.29 4.86 -3.30 -0.02 4.28 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -66.46 327.50 4.06 -62.41 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.27 Total: 22.19 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 4.34 Total: -14.68 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -2.02 Total: -82.33 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.10 Total: -31.88 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.56 Total: 44.29 kcal Total: -66.46 4.06 -62.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457985261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.066 kcal (2) G-P(sol) polarization free energy of solvation -66.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds