Wall clock time and date at job start Tue Mar 31 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35686 * 116.99810 * 2 1 4 4 C 1.38601 * 120.16348 * 359.97438 * 3 2 1 5 5 C 1.38136 * 120.11214 * 180.02562 * 4 3 2 6 6 C 1.38562 * 120.43361 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.84341 * 179.97438 * 6 5 4 8 8 C 1.37763 * 120.32112 * 359.97438 * 6 5 4 9 9 C 1.39918 * 119.87981 * 0.29960 * 8 6 5 10 10 C 1.46944 * 120.21466 * 179.70112 * 9 8 6 11 11 C 1.35002 * 120.00010 * 44.83126 * 10 9 8 12 12 C 1.46239 * 119.99665 * 9.52028 * 11 10 9 13 13 O 1.21721 * 120.00448 * 7.07214 * 12 11 10 14 14 N 1.34783 * 119.99936 * 187.06667 * 12 11 10 15 15 C 1.46501 * 119.99450 * 0.02562 * 14 12 11 16 16 C 1.46495 * 120.00078 * 180.02562 * 14 12 11 17 17 C 1.50707 * 109.46946 * 89.99926 * 16 14 12 18 18 H 1.08001 * 120.00165 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99593 * 179.97438 * 17 16 14 20 20 N 1.31510 * 120.00548 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99599 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47308 * 89.99723 * 21 19 17 23 23 H 1.48505 * 109.47118 * 209.99716 * 21 19 17 24 24 H 1.48504 * 109.47424 * 330.00032 * 21 19 17 25 25 H 1.08997 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47245 * 300.00223 * 1 2 3 27 27 H 1.09007 * 109.47130 * 60.00142 * 1 2 3 28 28 H 1.08002 * 119.94478 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.77935 * 179.97438 * 5 4 3 30 30 H 1.09007 * 109.47030 * 269.98301 * 7 6 5 31 31 H 1.09001 * 109.46799 * 29.97625 * 7 6 5 32 32 H 1.08999 * 109.47584 * 149.97824 * 7 6 5 33 33 H 1.08002 * 120.05915 * 180.02562 * 8 6 5 34 34 H 1.08003 * 120.00090 * 224.82999 * 10 9 8 35 35 H 1.07997 * 120.00059 * 189.52507 * 11 10 9 36 36 H 1.08995 * 109.47305 * 90.00540 * 15 14 12 37 37 H 1.09007 * 109.46754 * 209.99627 * 15 14 12 38 38 H 1.08995 * 109.47375 * 329.99633 * 15 14 12 39 39 H 1.08998 * 109.47092 * 209.99923 * 16 14 12 40 40 H 1.08997 * 109.47129 * 330.00408 * 16 14 12 41 41 H 0.97001 * 120.00466 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2934 2.3735 -0.0005 5 6 1.9216 3.6038 -0.0011 6 6 3.3048 3.6856 -0.0005 7 6 3.9762 5.0347 -0.0017 8 6 4.0693 2.5395 0.0011 9 6 3.4468 1.2864 -0.0042 10 6 4.2551 0.0593 -0.0092 11 6 5.3187 -0.0518 0.8148 12 6 5.5462 0.9514 1.8542 13 8 4.7117 1.8129 2.0618 14 7 6.6800 0.9221 2.5826 15 6 7.6845 -0.1145 2.3324 16 6 6.9076 1.9267 3.6242 17 6 6.3523 1.4276 4.9333 18 1 5.8770 0.4592 4.9842 19 6 6.4512 2.2074 6.0661 20 7 7.0295 3.3869 6.0041 21 14 5.7635 1.5886 7.6889 22 1 6.8156 0.8349 8.4171 23 1 5.3222 2.7431 8.5120 24 1 4.6060 0.6956 7.4277 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2147 2.3190 -0.0014 29 1 1.3307 4.5078 -0.0019 30 1 4.1389 5.3587 -1.0297 31 1 3.3409 5.7572 0.5107 32 1 4.9345 4.9642 0.5129 33 1 5.1471 2.6082 0.0019 34 1 3.9983 -0.7539 -0.6720 35 1 6.0016 -0.8814 0.7063 36 1 8.3918 0.2385 1.5819 37 1 8.2168 -0.3354 3.2577 38 1 7.1926 -1.0178 1.9717 39 1 7.9777 2.1061 3.7282 40 1 6.4085 2.8556 3.3484 41 1 7.0994 3.9354 6.8011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491263217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:47 Heat of formation + Delta-G solvation = -16.921716 kcal Electronic energy + Delta-G solvation = -23111.907797 eV Core-core repulsion = 19765.329534 eV Total energy + Delta-G solvation = -3346.578263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09915 -38.85732 -37.32210 -34.89830 -33.57783 -32.54928 -31.42669 -29.71388 -27.79882 -27.66547 -25.80624 -25.64179 -24.07870 -22.51910 -21.03395 -20.23170 -18.11920 -17.54149 -16.70599 -16.43089 -15.92191 -15.60451 -15.26461 -14.59563 -14.39191 -14.06400 -13.93171 -13.60604 -13.56040 -13.22230 -12.82323 -12.37648 -12.19356 -12.10446 -12.02273 -11.89437 -11.67626 -11.62604 -11.15293 -11.13770 -10.88608 -10.72158 -10.57120 -10.48290 -10.12368 -9.59544 -9.53648 -8.89435 -8.39787 -7.92505 -7.55316 -7.44034 -6.00447 -4.04617 1.14798 1.82910 2.25178 3.32216 3.38675 3.40440 3.44084 4.04071 4.12667 4.21362 4.49258 4.92327 5.01206 5.11544 5.15173 5.20066 5.31005 5.36523 5.40365 5.47951 5.57006 5.70116 5.76525 5.86490 5.91777 5.96794 6.00053 6.21604 6.26003 6.38137 6.39820 6.44243 6.67893 6.77997 7.00975 7.10046 7.17608 7.49672 7.61141 7.62896 7.96770 8.28388 8.51512 8.95820 9.21492 9.60445 11.07398 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.004778 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.797764 B = 5859.285941 C = 5964.681581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.134 3.866 4 C -0.221 4.221 5 C -0.072 4.072 6 C -0.134 4.134 7 C -0.105 4.105 8 C 0.012 3.988 9 C -0.091 4.091 10 C -0.028 4.028 11 C -0.208 4.208 12 C 0.526 3.474 13 O -0.527 6.527 14 N -0.597 5.597 15 C 0.083 3.917 16 C 0.246 3.754 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.030 0.970 40 H 0.044 0.956 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 -4.663 -15.591 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.089 3.911 4 C -0.240 4.240 5 C -0.090 4.090 6 C -0.135 4.135 7 C -0.161 4.161 8 C -0.006 4.006 9 C -0.092 4.092 10 C -0.048 4.048 11 C -0.229 4.229 12 C 0.315 3.685 13 O -0.406 6.406 14 N -0.328 5.328 15 C -0.061 4.061 16 C 0.127 3.873 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.706 -4.226 -15.323 17.665 hybrid contribution -0.536 -0.379 1.261 1.421 sum -8.242 -4.605 -14.063 16.938 Atomic orbital electron populations 1.22992 0.78953 1.03448 1.01169 1.85976 1.20873 1.27329 1.88793 1.18993 0.91242 0.83891 0.96939 1.20915 0.99255 0.92330 1.11469 1.20756 0.93936 0.96569 0.97763 1.19590 0.93416 0.95473 1.04973 1.20657 1.00916 0.93388 1.01175 1.20774 0.99030 0.89933 0.90892 1.18111 0.89322 0.93871 1.07875 1.22035 0.91948 0.94791 0.95992 1.23289 0.99977 1.01666 0.97970 1.18247 0.82275 0.85342 0.82623 1.90841 1.43025 1.37743 1.69034 1.48153 1.17734 1.30613 1.36335 1.21666 0.92077 0.90932 1.01464 1.19259 0.96716 0.87215 0.84142 1.21443 1.37903 1.03541 0.93286 0.92567 1.24917 0.95298 0.94775 0.99071 1.69928 1.43889 1.10314 1.29367 0.86524 0.79333 0.78387 0.83354 1.20651 1.21102 1.19944 0.88621 0.92768 0.92972 0.86069 0.86473 0.92159 0.92032 0.91419 0.86206 0.85400 0.85404 0.93801 0.90969 0.92275 0.95166 0.93786 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.68 9.95 -18.76 -0.19 -4.87 16 3 C 0.13 2.21 6.70 -38.64 -0.26 1.96 16 4 C -0.22 -3.30 9.03 -39.48 -0.36 -3.66 16 5 C -0.07 -1.09 9.68 -39.50 -0.38 -1.47 16 6 C -0.13 -2.22 5.87 -104.68 -0.61 -2.84 16 7 C -0.10 -1.49 10.00 36.01 0.36 -1.13 16 8 C 0.01 0.22 6.21 -39.13 -0.24 -0.03 16 9 C -0.09 -1.60 4.55 -104.93 -0.48 -2.07 16 10 C -0.03 -0.44 9.36 -37.21 -0.35 -0.79 16 11 C -0.21 -3.45 9.16 -37.52 -0.34 -3.80 16 12 C 0.53 11.35 6.68 -13.04 -0.09 11.26 16 13 O -0.53 -13.19 11.65 5.17 0.06 -13.13 16 14 N -0.60 -13.07 2.86 -184.68 -0.53 -13.59 16 15 C 0.08 1.36 10.19 59.85 0.61 1.97 16 16 C 0.25 6.55 5.16 -5.19 -0.03 6.53 16 17 C -0.52 -15.20 9.39 -34.44 -0.32 -15.53 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 21 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.54 7.66 -51.92 -0.40 0.15 16 27 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.12 1.46 6.30 -52.49 -0.33 1.13 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.12 2.18 7.04 -52.49 -0.37 1.81 16 34 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 35 H 0.13 1.69 6.14 -52.49 -0.32 1.36 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 38 H 0.06 0.81 6.01 -51.93 -0.31 0.49 16 39 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 40 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -34.69 343.07 -7.22 -41.90 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.85 Total: 0.01 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.60 Total: -6.61 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.21 Total: -39.85 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.13 Total: -18.00 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.69 -7.22 -41.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491263217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.983 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds