Wall clock time and date at job start Tue Mar 31 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35149 * 125.48742 * 2 1 4 4 C 1.40312 * 107.20562 * 179.77748 * 3 2 1 5 5 C 1.37943 * 106.52890 * 0.35440 * 4 3 2 6 6 C 1.41608 * 126.10428 * 179.90891 * 5 4 3 7 7 C 1.35628 * 120.00202 * 219.80733 * 6 5 4 8 8 C 1.41556 * 119.99969 * 8.83267 * 7 6 5 9 9 O 1.21781 * 119.99490 * 6.31246 * 8 7 6 10 10 N 1.34773 * 119.99905 * 186.30380 * 8 7 6 11 11 C 1.46499 * 119.99522 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47137 * 90.00752 * 11 10 8 13 13 H 1.08006 * 120.00026 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00259 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00262 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99937 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47041 * 90.00160 * 16 14 12 18 18 H 1.48500 * 109.47337 * 209.99861 * 16 14 12 19 19 H 1.48499 * 109.47188 * 329.99986 * 16 14 12 20 20 C 1.46495 * 120.00392 * 0.02562 * 10 8 7 21 21 C 1.53001 * 109.47214 * 89.99251 * 20 10 8 22 22 C 1.52999 * 117.50026 * 243.74906 * 21 20 10 23 23 C 1.52997 * 117.49713 * 175.08801 * 21 20 10 24 24 O 1.34017 * 125.47726 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47558 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47054 * 299.97944 * 1 2 3 27 27 H 1.09007 * 109.46932 * 59.97296 * 1 2 3 28 28 H 1.08000 * 126.39404 * 0.02562 * 3 2 1 29 29 H 1.08000 * 126.73352 * 180.22791 * 4 3 2 30 30 H 1.08001 * 120.00062 * 39.80504 * 6 5 4 31 31 H 1.07996 * 119.99796 * 189.11207 * 7 6 5 32 32 H 1.09003 * 109.47052 * 210.00522 * 11 10 8 33 33 H 1.08999 * 109.47722 * 330.00186 * 11 10 8 34 34 H 0.96995 * 120.00036 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.47273 * 209.99457 * 20 10 8 36 36 H 1.09004 * 109.47012 * 329.99917 * 20 10 8 37 37 H 1.09006 * 115.55119 * 29.42075 * 21 20 10 38 38 H 1.09000 * 117.50103 * 359.97438 * 22 21 20 39 39 H 1.09003 * 117.49533 * 145.02285 * 22 21 20 40 40 H 1.09002 * 117.49950 * 214.97715 * 23 21 20 41 41 H 1.08997 * 117.50463 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.1004 0.0000 4 6 3.6238 0.6603 0.0052 5 6 3.5817 -0.7185 0.0000 6 6 4.6997 -1.5875 0.0007 7 6 4.6841 -2.7133 -0.7554 8 6 3.6380 -2.9273 -1.6847 9 8 2.8163 -2.0519 -1.8887 10 7 3.5514 -4.0998 -2.3437 11 6 2.4690 -4.3210 -3.3058 12 6 2.9140 -3.8735 -4.6742 13 1 3.9041 -3.4649 -4.8133 14 6 2.0575 -3.9859 -5.7488 15 7 2.4457 -3.5949 -6.9430 16 14 0.3454 -4.6934 -5.5084 17 1 -0.6024 -3.5969 -5.1851 18 1 -0.0895 -5.3718 -6.7558 19 1 0.3670 -5.6739 -4.3934 20 6 4.5396 -5.1530 -2.0979 21 6 4.0550 -6.0510 -0.9578 22 6 4.8925 -6.0813 0.3223 23 6 4.8963 -7.2845 -0.6240 24 8 2.2848 -1.0914 0.0005 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8898 28 1 1.9557 2.1269 0.0004 29 1 4.5087 1.2795 0.0101 30 1 5.5650 -1.3538 0.6034 31 1 5.4674 -3.4486 -0.6453 32 1 2.2189 -5.3815 -3.3338 33 1 1.5918 -3.7487 -3.0039 34 1 1.8432 -3.6743 -7.6989 35 1 4.6671 -5.7495 -3.0012 36 1 5.4925 -4.7003 -1.8238 37 1 2.9733 -6.1362 -0.8537 38 1 5.7888 -5.4618 0.3521 39 1 4.3617 -6.1869 1.2685 40 1 4.3681 -8.1812 -0.2998 41 1 5.7946 -7.4567 -1.2167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491492759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:09 Heat of formation + Delta-G solvation = 36.353940 kcal Electronic energy + Delta-G solvation = -23288.651628 eV Core-core repulsion = 19944.383571 eV Total energy + Delta-G solvation = -3344.268057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.06011 -39.40776 -37.26765 -34.73608 -33.66662 -32.74636 -32.44669 -30.89394 -28.65333 -26.82662 -25.86360 -23.43152 -22.32558 -21.42224 -21.37611 -20.72559 -19.77813 -18.16127 -17.33069 -16.86388 -15.92720 -15.73021 -15.22980 -14.77860 -14.65376 -14.13769 -13.81598 -13.76358 -13.24716 -12.93185 -12.81631 -12.69304 -12.54659 -12.46958 -12.24832 -11.91241 -11.62195 -11.48042 -11.46312 -11.36568 -10.88578 -10.55289 -10.32727 -10.11602 -9.89320 -9.70070 -9.48776 -9.37972 -8.98201 -8.55930 -7.69707 -7.43298 -6.05808 -4.03835 0.94145 2.45388 3.01042 3.30420 3.36368 3.38150 3.44666 3.77743 4.03550 4.06456 4.41931 4.83779 4.97329 4.99999 5.01529 5.14844 5.24772 5.27306 5.33493 5.42013 5.53957 5.60073 5.63266 5.67233 5.82073 5.88477 5.94724 5.98797 6.03934 6.08153 6.14491 6.25826 6.33908 6.42763 6.58515 6.78332 6.90077 7.02238 7.42175 7.61136 7.65167 8.31937 8.50925 8.97189 9.07375 9.54950 11.07743 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.006773 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.543247 B = 4133.230981 C = 5893.399031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.006 3.994 3 C -0.226 4.226 4 C -0.189 4.189 5 C 0.021 3.979 6 C -0.022 4.022 7 C -0.185 4.185 8 C 0.531 3.469 9 O -0.522 6.522 10 N -0.585 5.585 11 C 0.218 3.782 12 C -0.525 4.525 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.875 3.125 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.141 3.859 21 C -0.166 4.166 22 C -0.182 4.182 23 C -0.177 4.177 24 O -0.128 6.128 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.133 0.867 32 H 0.028 0.972 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 0.469 17.591 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.047 4.047 3 C -0.245 4.245 4 C -0.208 4.208 5 C -0.029 4.029 6 C -0.042 4.042 7 C -0.205 4.205 8 C 0.321 3.679 9 O -0.401 6.401 10 N -0.315 5.315 11 C 0.097 3.903 12 C -0.564 4.564 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.191 1.191 20 C 0.017 3.983 21 C -0.185 4.185 22 C -0.219 4.219 23 C -0.215 4.215 24 O -0.022 6.022 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.151 0.849 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.921 0.615 17.246 17.502 hybrid contribution -0.637 -0.291 -0.242 0.741 sum 2.284 0.324 17.004 17.160 Atomic orbital electron populations 1.20281 0.85876 1.03940 1.02951 1.22485 0.93990 0.84596 1.03627 1.21249 0.92871 0.98865 1.11522 1.22010 0.97868 0.93102 1.07823 1.19466 0.82926 0.93035 1.07515 1.20505 0.94286 0.92189 0.97251 1.22590 1.01292 0.98631 0.98006 1.16972 0.85880 0.82878 0.82203 1.90843 1.41703 1.41798 1.65741 1.47794 1.29298 1.13236 1.41204 1.19614 0.86344 0.96282 0.88063 1.21337 1.02598 1.42004 0.90439 0.90822 1.24850 0.98137 0.94999 0.95021 1.69900 1.36542 1.47620 0.99662 0.86861 0.85317 0.79825 0.77759 1.19995 1.21097 1.19074 1.21068 0.91054 0.89066 0.97105 1.22940 0.98701 0.99855 0.97048 1.23031 1.02316 1.02015 0.94531 1.22923 1.02512 0.92448 1.03567 1.84240 1.15752 1.33666 1.68495 0.90724 0.90240 0.89718 0.84064 0.83794 0.83329 0.84929 0.95377 0.94643 0.92633 0.89328 0.91027 0.87627 0.88901 0.89193 0.89044 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.41 36.00 0.37 -0.58 16 2 C 0.01 0.10 7.30 -35.41 -0.26 -0.16 16 3 C -0.23 -3.51 10.76 -39.90 -0.43 -3.94 16 4 C -0.19 -2.96 10.90 -38.91 -0.42 -3.39 16 5 C 0.02 0.37 5.32 -38.40 -0.20 0.16 16 6 C -0.02 -0.32 9.95 -39.23 -0.39 -0.71 16 7 C -0.18 -2.96 9.15 -39.25 -0.36 -3.31 16 8 C 0.53 11.32 7.25 -15.00 -0.11 11.21 16 9 O -0.52 -13.17 11.98 -19.72 -0.24 -13.41 16 10 N -0.58 -12.37 2.46 -178.50 -0.44 -12.80 16 11 C 0.22 5.45 4.23 -5.20 -0.02 5.43 16 12 C -0.53 -15.39 9.94 -34.44 -0.34 -15.73 16 13 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 14 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 16 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 17 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 20 C 0.14 2.29 5.42 -4.04 -0.02 2.27 16 21 C -0.17 -2.27 6.01 -90.62 -0.54 -2.82 16 22 C -0.18 -1.97 10.06 -26.69 -0.27 -2.24 16 23 C -0.18 -1.93 10.25 -26.69 -0.27 -2.20 16 24 O -0.13 -2.49 7.81 -20.15 -0.16 -2.64 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.13 1.66 5.43 -52.49 -0.29 1.38 16 32 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 33 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.09 1.51 8.07 -51.93 -0.42 1.09 16 36 H 0.07 0.99 5.75 -51.93 -0.30 0.69 16 37 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.09 0.89 7.56 -51.93 -0.39 0.50 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -35.99 345.17 -8.83 -44.83 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.94 Total: 2.86 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -3.37 Total: -13.97 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.34 Total: -40.18 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.39 Total: -16.05 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.99 -8.83 -44.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.181 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds