Wall clock time and date at job start Tue Mar 31 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35149 * 125.48742 * 2 1 4 4 C 1.40312 * 107.20562 * 179.77748 * 3 2 1 5 5 C 1.37943 * 106.52890 * 0.35440 * 4 3 2 6 6 C 1.41608 * 126.10428 * 179.90891 * 5 4 3 7 7 C 1.35628 * 120.00202 * 219.80733 * 6 5 4 8 8 C 1.41556 * 119.99969 * 8.83267 * 7 6 5 9 9 O 1.21781 * 119.99490 * 6.31246 * 8 7 6 10 10 N 1.34773 * 119.99905 * 186.30380 * 8 7 6 11 11 C 1.46499 * 119.99522 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47137 * 90.00752 * 11 10 8 13 13 H 1.08006 * 120.00026 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00259 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00262 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99937 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47041 * 90.00160 * 16 14 12 18 18 H 1.48500 * 109.47337 * 209.99861 * 16 14 12 19 19 H 1.48499 * 109.47188 * 329.99986 * 16 14 12 20 20 C 1.46495 * 120.00392 * 0.02562 * 10 8 7 21 21 C 1.53001 * 109.47214 * 89.99251 * 20 10 8 22 22 C 1.52999 * 117.50026 * 243.74906 * 21 20 10 23 23 C 1.52997 * 117.49713 * 175.08801 * 21 20 10 24 24 O 1.34017 * 125.47726 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47558 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47054 * 299.97944 * 1 2 3 27 27 H 1.09007 * 109.46932 * 59.97296 * 1 2 3 28 28 H 1.08000 * 126.39404 * 0.02562 * 3 2 1 29 29 H 1.08000 * 126.73352 * 180.22791 * 4 3 2 30 30 H 1.08001 * 120.00062 * 39.80504 * 6 5 4 31 31 H 1.07996 * 119.99796 * 189.11207 * 7 6 5 32 32 H 1.09003 * 109.47052 * 210.00522 * 11 10 8 33 33 H 1.08999 * 109.47722 * 330.00186 * 11 10 8 34 34 H 0.96995 * 120.00036 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.47273 * 209.99457 * 20 10 8 36 36 H 1.09004 * 109.47012 * 329.99917 * 20 10 8 37 37 H 1.09006 * 115.55119 * 29.42075 * 21 20 10 38 38 H 1.09000 * 117.50103 * 359.97438 * 22 21 20 39 39 H 1.09003 * 117.49533 * 145.02285 * 22 21 20 40 40 H 1.09002 * 117.49950 * 214.97715 * 23 21 20 41 41 H 1.08997 * 117.50463 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.1004 0.0000 4 6 3.6238 0.6603 0.0052 5 6 3.5817 -0.7185 0.0000 6 6 4.6997 -1.5875 0.0007 7 6 4.6841 -2.7133 -0.7554 8 6 3.6380 -2.9273 -1.6847 9 8 2.8163 -2.0519 -1.8887 10 7 3.5514 -4.0998 -2.3437 11 6 2.4690 -4.3210 -3.3058 12 6 2.9140 -3.8735 -4.6742 13 1 3.9041 -3.4649 -4.8133 14 6 2.0575 -3.9859 -5.7488 15 7 2.4457 -3.5949 -6.9430 16 14 0.3454 -4.6934 -5.5084 17 1 -0.6024 -3.5969 -5.1851 18 1 -0.0895 -5.3718 -6.7558 19 1 0.3670 -5.6739 -4.3934 20 6 4.5396 -5.1530 -2.0979 21 6 4.0550 -6.0510 -0.9578 22 6 4.8925 -6.0813 0.3223 23 6 4.8963 -7.2845 -0.6240 24 8 2.2848 -1.0914 0.0005 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8898 28 1 1.9557 2.1269 0.0004 29 1 4.5087 1.2795 0.0101 30 1 5.5650 -1.3538 0.6034 31 1 5.4674 -3.4486 -0.6453 32 1 2.2189 -5.3815 -3.3338 33 1 1.5918 -3.7487 -3.0039 34 1 1.8432 -3.6743 -7.6989 35 1 4.6671 -5.7495 -3.0012 36 1 5.4925 -4.7003 -1.8238 37 1 2.9733 -6.1362 -0.8537 38 1 5.7888 -5.4618 0.3521 39 1 4.3617 -6.1869 1.2685 40 1 4.3681 -8.1812 -0.2998 41 1 5.7946 -7.4567 -1.2167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491492759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:09 Heat of formation + Delta-G solvation = 14.973302 kcal Electronic energy + Delta-G solvation = -23289.578762 eV Core-core repulsion = 19944.383571 eV Total energy + Delta-G solvation = -3345.195191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.30130 -40.93047 -38.40044 -36.30709 -35.00884 -34.59800 -33.97160 -32.11033 -30.52702 -28.08981 -27.30604 -25.11490 -23.16164 -23.00113 -22.62112 -21.85823 -21.08441 -19.56633 -19.10507 -18.69465 -17.45078 -16.99591 -16.65897 -16.22659 -15.93868 -15.78193 -15.09941 -15.00662 -14.73754 -14.49460 -14.12863 -13.93846 -13.84252 -13.76559 -13.64312 -13.52941 -13.08149 -12.94549 -12.71341 -12.47746 -12.44374 -12.25904 -12.07091 -11.79608 -11.25097 -11.01546 -10.91119 -10.85838 -10.59353 -10.52749 -9.37712 -8.70046 -8.37100 -6.41478 -0.29269 1.21812 1.27512 1.31190 1.40285 1.79692 2.25400 2.27140 2.41337 2.60844 2.96780 2.99771 3.75949 3.89200 3.95526 4.02096 4.05058 4.15757 4.21921 4.30000 4.46061 4.56156 4.66158 4.68237 4.72946 4.79226 4.85301 4.85756 4.88363 4.90455 4.95427 5.08846 5.15355 5.20775 5.33421 5.34440 5.43642 5.46116 5.66482 5.77169 6.23180 6.39250 6.59013 6.75195 7.19583 7.49233 8.80005 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.006773 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.543247 B = 4133.230981 C = 5893.399031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.021 4.021 3 C -0.234 4.234 4 C -0.188 4.188 5 C -0.018 4.018 6 C 0.005 3.995 7 C -0.208 4.208 8 C 0.519 3.481 9 O -0.576 6.576 10 N -0.595 5.595 11 C 0.232 3.768 12 C -0.533 4.533 13 H 0.027 0.973 14 C 0.012 3.988 15 N -0.944 5.944 16 Si 0.946 3.054 17 H -0.276 1.276 18 H -0.271 1.271 19 H -0.243 1.243 20 C 0.141 3.859 21 C -0.192 4.192 22 C -0.163 4.163 23 C -0.162 4.162 24 O -0.160 6.160 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.168 0.832 29 H 0.174 0.826 30 H 0.205 0.795 31 H 0.170 0.830 32 H 0.042 0.958 33 H 0.013 0.987 34 H 0.269 0.731 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 -0.009 20.119 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 C -0.253 4.253 4 C -0.207 4.207 5 C -0.067 4.067 6 C -0.015 4.015 7 C -0.229 4.229 8 C 0.312 3.688 9 O -0.458 6.458 10 N -0.324 5.324 11 C 0.109 3.891 12 C -0.571 4.571 13 H 0.046 0.954 14 C -0.186 4.186 15 N -0.584 5.584 16 Si 0.769 3.231 17 H -0.202 1.202 18 H -0.196 1.196 19 H -0.166 1.166 20 C 0.018 3.982 21 C -0.211 4.211 22 C -0.200 4.200 23 C -0.199 4.199 24 O -0.055 6.055 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.186 0.814 29 H 0.192 0.808 30 H 0.221 0.779 31 H 0.187 0.813 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.728 0.102 19.801 20.150 hybrid contribution -0.826 -0.003 -1.021 1.314 sum 2.902 0.098 18.780 19.003 Atomic orbital electron populations 1.20428 0.83914 1.03816 1.04772 1.23301 0.95629 0.84697 1.03747 1.21684 0.92895 0.99842 1.10836 1.22493 0.99057 0.92883 1.06257 1.20234 0.83143 0.94548 1.08811 1.21232 0.94499 0.90127 0.95618 1.22527 1.00979 1.00891 0.98454 1.17872 0.86422 0.81933 0.82577 1.90807 1.43993 1.43384 1.67648 1.47869 1.29323 1.14841 1.40408 1.19177 0.87076 0.96085 0.86772 1.21540 1.00828 1.41770 0.92977 0.95425 1.25820 1.02918 0.95345 0.94481 1.70046 1.38487 1.49147 1.00759 0.85740 0.79008 0.79435 0.78928 1.20212 1.19574 1.16632 1.21267 0.91122 0.88195 0.97613 1.22645 0.97997 1.02149 0.98338 1.23164 1.01859 1.01529 0.93414 1.23039 1.01914 0.92079 1.02907 1.84215 1.16993 1.35136 1.69179 0.91806 0.86806 0.89341 0.81434 0.80823 0.77874 0.81294 0.94053 0.96924 0.92243 0.91036 0.88313 0.89907 0.86896 0.88395 0.88085 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.87 10.41 71.24 0.74 -1.13 16 2 C -0.02 -0.72 7.30 24.97 0.18 -0.54 16 3 C -0.23 -7.01 10.76 22.06 0.24 -6.77 16 4 C -0.19 -5.59 10.90 22.70 0.25 -5.35 16 5 C -0.02 -0.60 5.32 23.03 0.12 -0.48 16 6 C 0.00 0.12 9.95 22.50 0.22 0.35 16 7 C -0.21 -6.36 9.15 22.48 0.21 -6.15 16 8 C 0.52 22.62 7.25 85.06 0.62 23.23 16 9 O -0.58 -30.33 11.98 19.14 0.23 -30.10 16 10 N -0.59 -25.82 2.46 -836.83 -2.05 -27.88 16 11 C 0.23 12.00 4.23 85.63 0.36 12.37 16 12 C -0.53 -32.70 9.94 25.60 0.25 -32.45 16 13 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 14 C 0.01 0.75 5.47 84.65 0.46 1.22 16 15 N -0.94 -61.23 13.96 21.45 0.30 -60.93 16 16 Si 0.95 46.27 27.47 68.60 1.88 48.16 16 17 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.24 -10.87 6.54 99.48 0.65 -10.22 16 20 C 0.14 4.51 5.42 86.38 0.47 4.98 16 21 C -0.19 -5.02 6.01 -10.79 -0.06 -5.08 16 22 C -0.16 -3.00 10.06 30.62 0.31 -2.69 16 23 C -0.16 -3.08 10.25 30.62 0.31 -2.76 16 24 O -0.16 -6.36 7.81 17.61 0.14 -6.22 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 29 H 0.17 3.90 8.06 -2.91 -0.02 3.88 16 30 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.17 3.69 5.43 -2.91 -0.02 3.67 16 32 H 0.04 2.01 7.13 -2.39 -0.02 1.99 16 33 H 0.01 0.71 6.85 -2.39 -0.02 0.70 16 34 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 35 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 36 H 0.10 2.55 5.75 -2.38 -0.01 2.54 16 37 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 38 H 0.11 1.64 7.56 -2.39 -0.02 1.62 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -84.81 345.17 6.14 -78.67 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.96 Total: 19.57 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.68 Total: -21.26 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -1.76 Total: -88.80 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: 0.37 Total: -36.32 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.16 kcal Total: -84.81 6.14 -78.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.639 kcal (2) G-P(sol) polarization free energy of solvation -84.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds