Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35694 * 117.00223 * 2 1 4 4 C 1.38608 * 120.16076 * 0.30180 * 3 2 1 5 5 C 1.38125 * 120.11354 * 180.31573 * 4 3 2 6 6 C 1.38577 * 120.43251 * 359.68315 * 5 4 3 7 7 C 1.50693 * 119.83881 * 180.02562 * 6 5 4 8 8 C 1.37752 * 120.31810 * 359.97438 * 6 5 4 9 9 C 1.39933 * 119.88342 * 0.02929 * 8 6 5 10 10 C 1.46938 * 120.21444 * 179.97438 * 9 8 6 11 11 C 1.35010 * 119.99913 * 359.97438 * 10 9 8 12 12 C 1.46234 * 119.99842 * 180.27702 * 11 10 9 13 13 O 1.21723 * 120.00505 * 359.72112 * 12 11 10 14 14 N 1.34778 * 120.00315 * 179.72078 * 12 11 10 15 15 C 1.46493 * 120.00609 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.46868 * 35.00108 * 15 14 12 17 17 C 1.52997 * 109.47398 * 275.00474 * 15 14 12 18 18 C 1.50701 * 109.47256 * 155.00070 * 15 14 12 19 19 H 1.07998 * 120.00149 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99831 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00387 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99829 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47255 * 90.00012 * 22 20 18 24 24 H 1.48497 * 109.47216 * 210.00063 * 22 20 18 25 25 H 1.48500 * 109.47122 * 329.99984 * 22 20 18 26 26 H 1.08996 * 109.46783 * 299.99957 * 1 2 3 27 27 H 1.09000 * 109.46919 * 59.99592 * 1 2 3 28 28 H 1.08994 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.08005 * 119.94579 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.78606 * 179.69593 * 5 4 3 31 31 H 1.09000 * 109.47223 * 269.97189 * 7 6 5 32 32 H 1.08999 * 109.47598 * 29.97515 * 7 6 5 33 33 H 1.08999 * 109.46927 * 149.97399 * 7 6 5 34 34 H 1.07999 * 120.05641 * 179.97438 * 8 6 5 35 35 H 1.07992 * 120.00345 * 180.02562 * 10 9 8 36 36 H 1.08002 * 119.99744 * 359.97438 * 11 10 9 37 37 H 0.97000 * 119.99350 * 0.02562 * 14 12 11 38 38 H 1.08995 * 109.47096 * 299.99700 * 17 15 14 39 39 H 1.08997 * 109.47293 * 59.99772 * 17 15 14 40 40 H 1.09003 * 109.47189 * 179.97438 * 17 15 14 41 41 H 0.96996 * 120.00245 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2935 2.3736 0.0063 5 6 1.9216 3.6038 -0.0003 6 6 3.3049 3.6856 -0.0066 7 6 3.9762 5.0347 -0.0132 8 6 4.0693 2.5396 -0.0059 9 6 3.4468 1.2863 0.0007 10 6 4.2550 0.0592 0.0009 11 6 5.6028 0.1387 -0.0057 12 6 6.4071 -1.0826 -0.0115 13 8 5.8617 -2.1708 -0.0053 14 7 7.7525 -1.0034 -0.0239 15 6 8.5584 -2.2268 -0.0292 16 1 8.0499 -2.9942 -0.6128 17 6 8.7469 -2.7196 1.4069 18 6 9.9046 -1.9389 -0.6423 19 1 10.1369 -0.9441 -0.9926 20 6 10.8397 -2.9457 -0.7560 21 7 10.5572 -4.1571 -0.3291 22 14 12.5087 -2.5888 -1.5154 23 1 13.4563 -2.1676 -0.4524 24 1 13.0225 -3.8135 -2.1797 25 1 12.3741 -1.5014 -2.5177 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2148 2.3191 0.0108 30 1 1.3307 4.5078 -0.0003 31 1 4.1340 5.3570 -1.0424 32 1 3.3434 5.7580 0.5011 33 1 4.9369 4.9650 0.4970 34 1 5.1471 2.6083 -0.0113 35 1 3.7711 -0.9062 0.0056 36 1 6.0868 1.1041 -0.0116 37 1 8.1872 -0.1363 -0.0284 38 1 9.2553 -1.9523 1.9906 39 1 7.7732 -2.9279 1.8504 40 1 9.3461 -3.6302 1.4029 41 1 11.2149 -4.8654 -0.4094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491828969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -44.310193 kcal Electronic energy + Delta-G solvation = -21793.436399 eV Core-core repulsion = 18445.670483 eV Total energy + Delta-G solvation = -3347.765916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42865 -38.74430 -37.88905 -34.90740 -34.03760 -32.30622 -32.00635 -30.04133 -28.60170 -28.04092 -26.17324 -25.21750 -24.31816 -22.12342 -21.07442 -19.79770 -18.98789 -18.32223 -17.26502 -16.33887 -15.96101 -15.81380 -15.22394 -14.91280 -14.64750 -14.24579 -13.98212 -13.92766 -13.79746 -13.68277 -12.98980 -12.59153 -12.50477 -12.34621 -12.18079 -12.04840 -11.65421 -11.22006 -11.15143 -11.10725 -11.01048 -10.91684 -10.69047 -10.29831 -10.19556 -10.16908 -9.02633 -8.98211 -8.70576 -8.50825 -7.97827 -7.72207 -6.07979 -4.17079 0.61261 1.20184 2.17161 3.05047 3.27123 3.33731 3.36259 3.58795 4.14360 4.17236 4.40270 4.51859 4.60132 4.70414 4.82101 4.89814 5.03221 5.09474 5.22751 5.24253 5.32383 5.35772 5.40189 5.42068 5.69198 5.74280 5.89313 5.96062 6.05211 6.37137 6.52122 6.61784 6.73777 6.90012 7.03794 7.18791 7.21682 7.53785 7.63775 7.76113 7.98218 8.20359 8.75158 8.84242 9.22419 9.50692 10.98117 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022639 B = 0.003024 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.492991 B = 9255.849817 C =10212.105660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.140 3.860 4 C -0.208 4.208 5 C -0.077 4.077 6 C -0.126 4.126 7 C -0.110 4.110 8 C -0.069 4.069 9 C -0.088 4.088 10 C -0.036 4.036 11 C -0.195 4.195 12 C 0.530 3.470 13 O -0.559 6.559 14 N -0.703 5.703 15 C 0.263 3.737 16 H 0.049 0.951 17 C -0.147 4.147 18 C -0.533 4.533 19 H 0.061 0.939 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.902 3.098 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.389 0.611 38 H 0.026 0.974 39 H 0.015 0.985 40 H 0.090 0.910 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.274 17.010 1.303 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.094 3.906 4 C -0.227 4.227 5 C -0.095 4.095 6 C -0.126 4.126 7 C -0.166 4.166 8 C -0.087 4.087 9 C -0.088 4.088 10 C -0.056 4.056 11 C -0.216 4.216 12 C 0.317 3.683 13 O -0.441 6.441 14 N -0.350 5.350 15 C 0.161 3.839 16 H 0.067 0.933 17 C -0.205 4.205 18 C -0.572 4.572 19 H 0.079 0.921 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.729 3.271 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.221 0.779 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.108 0.892 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.443 15.814 1.317 24.330 hybrid contribution 0.847 0.740 -0.375 1.185 sum -17.596 16.554 0.943 24.177 Atomic orbital electron populations 1.23095 0.78310 1.04234 1.01191 1.86091 1.21335 1.26576 1.87977 1.19175 0.91490 0.84402 0.95517 1.21136 0.99968 0.92143 1.09432 1.20887 0.93938 0.96911 0.97760 1.19742 0.93547 0.95569 1.03717 1.20730 1.00506 0.93115 1.02286 1.21209 1.00164 0.90245 0.97078 1.18430 0.89718 0.93918 1.06762 1.22084 0.93260 0.96871 0.93354 1.23166 0.94762 0.98395 1.05289 1.18220 0.83221 0.88935 0.77918 1.90767 1.72219 1.29477 1.51593 1.46439 1.05272 1.11593 1.71670 1.18744 0.89272 0.81907 0.93967 0.93314 1.22073 0.98520 1.02572 0.97365 1.21236 0.98391 0.96595 1.40931 0.92066 1.24894 0.98764 0.94859 0.95247 1.69905 1.35134 1.01194 1.45902 0.86446 0.83517 0.77828 0.79288 1.20570 1.21088 1.19852 0.92639 0.92639 0.87997 0.85293 0.85827 0.91318 0.91747 0.91419 0.84655 0.84404 0.86033 0.77898 0.95495 0.96609 0.89172 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.79 9.68 -18.78 -0.18 -3.97 16 3 C 0.14 1.73 6.70 -38.64 -0.26 1.47 16 4 C -0.21 -2.03 9.03 -39.49 -0.36 -2.39 16 5 C -0.08 -0.69 9.68 -39.50 -0.38 -1.08 16 6 C -0.13 -1.22 5.87 -104.68 -0.61 -1.83 16 7 C -0.11 -0.78 10.00 36.00 0.36 -0.42 16 8 C -0.07 -0.79 9.05 -39.12 -0.35 -1.14 16 9 C -0.09 -1.18 5.88 -104.93 -0.62 -1.79 16 10 C -0.04 -0.57 9.21 -37.21 -0.34 -0.91 16 11 C -0.20 -3.21 9.41 -37.52 -0.35 -3.56 16 12 C 0.53 11.42 7.70 -13.05 -0.10 11.32 16 13 O -0.56 -14.33 15.89 5.17 0.08 -14.25 16 14 N -0.70 -15.44 5.06 -56.39 -0.29 -15.73 16 15 C 0.26 6.96 2.56 -69.09 -0.18 6.78 16 16 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 17 C -0.15 -3.79 9.26 37.16 0.34 -3.45 16 18 C -0.53 -14.49 8.73 -34.44 -0.30 -14.79 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 20 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 21 N -0.88 -25.41 11.32 55.43 0.63 -24.78 16 22 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 26 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 27 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.13 0.93 6.30 -52.48 -0.33 0.60 16 30 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.04 16 34 H 0.14 1.36 6.17 -52.49 -0.32 1.03 16 35 H 0.14 2.44 7.10 -52.49 -0.37 2.07 16 36 H 0.12 1.58 6.07 -52.49 -0.32 1.26 16 37 H 0.39 7.30 8.52 -40.82 -0.35 6.95 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -33.18 346.97 -7.50 -40.68 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.69 Total: 5.78 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.26 Total: -8.89 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.34 Total: -40.51 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.10 Total: -18.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.18 -7.50 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491828969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.631 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds