Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35694 * 117.00223 * 2 1 4 4 C 1.38608 * 120.16076 * 0.30180 * 3 2 1 5 5 C 1.38125 * 120.11354 * 180.31573 * 4 3 2 6 6 C 1.38577 * 120.43251 * 359.68315 * 5 4 3 7 7 C 1.50693 * 119.83881 * 180.02562 * 6 5 4 8 8 C 1.37752 * 120.31810 * 359.97438 * 6 5 4 9 9 C 1.39933 * 119.88342 * 0.02929 * 8 6 5 10 10 C 1.46938 * 120.21444 * 179.97438 * 9 8 6 11 11 C 1.35010 * 119.99913 * 359.97438 * 10 9 8 12 12 C 1.46234 * 119.99842 * 180.27702 * 11 10 9 13 13 O 1.21723 * 120.00505 * 359.72112 * 12 11 10 14 14 N 1.34778 * 120.00315 * 179.72078 * 12 11 10 15 15 C 1.46493 * 120.00609 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.46868 * 35.00108 * 15 14 12 17 17 C 1.52997 * 109.47398 * 275.00474 * 15 14 12 18 18 C 1.50701 * 109.47256 * 155.00070 * 15 14 12 19 19 H 1.07998 * 120.00149 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99831 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00387 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99829 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47255 * 90.00012 * 22 20 18 24 24 H 1.48497 * 109.47216 * 210.00063 * 22 20 18 25 25 H 1.48500 * 109.47122 * 329.99984 * 22 20 18 26 26 H 1.08996 * 109.46783 * 299.99957 * 1 2 3 27 27 H 1.09000 * 109.46919 * 59.99592 * 1 2 3 28 28 H 1.08994 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.08005 * 119.94579 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.78606 * 179.69593 * 5 4 3 31 31 H 1.09000 * 109.47223 * 269.97189 * 7 6 5 32 32 H 1.08999 * 109.47598 * 29.97515 * 7 6 5 33 33 H 1.08999 * 109.46927 * 149.97399 * 7 6 5 34 34 H 1.07999 * 120.05641 * 179.97438 * 8 6 5 35 35 H 1.07992 * 120.00345 * 180.02562 * 10 9 8 36 36 H 1.08002 * 119.99744 * 359.97438 * 11 10 9 37 37 H 0.97000 * 119.99350 * 0.02562 * 14 12 11 38 38 H 1.08995 * 109.47096 * 299.99700 * 17 15 14 39 39 H 1.08997 * 109.47293 * 59.99772 * 17 15 14 40 40 H 1.09003 * 109.47189 * 179.97438 * 17 15 14 41 41 H 0.96996 * 120.00245 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2935 2.3736 0.0063 5 6 1.9216 3.6038 -0.0003 6 6 3.3049 3.6856 -0.0066 7 6 3.9762 5.0347 -0.0132 8 6 4.0693 2.5396 -0.0059 9 6 3.4468 1.2863 0.0007 10 6 4.2550 0.0592 0.0009 11 6 5.6028 0.1387 -0.0057 12 6 6.4071 -1.0826 -0.0115 13 8 5.8617 -2.1708 -0.0053 14 7 7.7525 -1.0034 -0.0239 15 6 8.5584 -2.2268 -0.0292 16 1 8.0499 -2.9942 -0.6128 17 6 8.7469 -2.7196 1.4069 18 6 9.9046 -1.9389 -0.6423 19 1 10.1369 -0.9441 -0.9926 20 6 10.8397 -2.9457 -0.7560 21 7 10.5572 -4.1571 -0.3291 22 14 12.5087 -2.5888 -1.5154 23 1 13.4563 -2.1676 -0.4524 24 1 13.0225 -3.8135 -2.1797 25 1 12.3741 -1.5014 -2.5177 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2148 2.3191 0.0108 30 1 1.3307 4.5078 -0.0003 31 1 4.1340 5.3570 -1.0424 32 1 3.3434 5.7580 0.5011 33 1 4.9369 4.9650 0.4970 34 1 5.1471 2.6083 -0.0113 35 1 3.7711 -0.9062 0.0056 36 1 6.0868 1.1041 -0.0116 37 1 8.1872 -0.1363 -0.0284 38 1 9.2553 -1.9523 1.9906 39 1 7.7732 -2.9279 1.8504 40 1 9.3461 -3.6302 1.4029 41 1 11.2149 -4.8654 -0.4094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491828969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -65.627840 kcal Electronic energy + Delta-G solvation = -21794.360801 eV Core-core repulsion = 18445.670483 eV Total energy + Delta-G solvation = -3348.690319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27273 -40.48126 -38.70373 -36.80609 -35.25161 -34.31116 -32.75010 -31.46001 -30.20752 -28.70977 -27.35842 -26.84115 -25.54155 -23.42173 -22.24631 -21.39523 -20.49625 -19.22085 -18.75730 -17.76082 -17.27790 -16.96225 -16.71244 -16.08311 -15.87470 -15.66152 -15.40313 -14.99587 -14.70077 -14.51414 -14.41755 -14.37043 -13.72701 -13.36796 -13.25800 -13.02813 -12.91073 -12.86858 -12.71516 -12.70131 -12.29884 -12.18618 -12.12999 -11.87235 -11.81119 -11.24590 -11.11154 -10.84106 -10.59549 -9.82248 -9.53315 -8.80493 -8.17571 -6.35728 -0.42264 0.41888 1.02983 1.45067 1.46503 1.57259 2.32719 2.35833 2.42332 2.67340 2.85826 3.12684 3.66606 3.76007 3.93934 4.12265 4.18326 4.24577 4.38215 4.39302 4.41799 4.61929 4.69382 4.74053 4.74759 4.90687 4.93820 4.94864 5.05532 5.07902 5.21426 5.25813 5.37516 5.47246 5.53832 5.61017 5.65867 5.69438 5.84071 5.92498 6.08625 6.41483 6.71957 6.97793 7.31781 7.55684 8.89226 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022639 B = 0.003024 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.492991 B = 9255.849817 C =10212.105660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.128 3.872 4 C -0.208 4.208 5 C -0.066 4.066 6 C -0.130 4.130 7 C -0.109 4.109 8 C -0.071 4.071 9 C -0.125 4.125 10 C -0.012 4.012 11 C -0.212 4.212 12 C 0.526 3.474 13 O -0.612 6.612 14 N -0.698 5.698 15 C 0.268 3.732 16 H -0.004 1.004 17 C -0.133 4.133 18 C -0.548 4.548 19 H 0.075 0.925 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.977 3.023 23 H -0.269 1.269 24 H -0.286 1.286 25 H -0.263 1.263 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.109 0.891 36 H 0.161 0.839 37 H 0.407 0.593 38 H 0.042 0.958 39 H 0.009 0.991 40 H 0.068 0.932 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.841 20.873 1.049 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.082 3.918 4 C -0.227 4.227 5 C -0.083 4.083 6 C -0.131 4.131 7 C -0.165 4.165 8 C -0.088 4.088 9 C -0.125 4.125 10 C -0.033 4.033 11 C -0.232 4.232 12 C 0.316 3.684 13 O -0.497 6.497 14 N -0.346 5.346 15 C 0.165 3.835 16 H 0.014 0.986 17 C -0.192 4.192 18 C -0.586 4.586 19 H 0.093 0.907 20 C -0.188 4.188 21 N -0.557 5.557 22 Si 0.801 3.199 23 H -0.195 1.195 24 H -0.212 1.212 25 H -0.187 1.187 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.174 0.826 30 H 0.175 0.825 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.127 0.873 36 H 0.178 0.822 37 H 0.242 0.758 38 H 0.061 0.939 39 H 0.028 0.972 40 H 0.087 0.913 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.019 19.728 1.067 27.424 hybrid contribution 0.776 -0.416 -0.289 0.926 sum -18.243 19.313 0.778 26.578 Atomic orbital electron populations 1.23387 0.76067 1.05502 1.02712 1.86054 1.23855 1.27308 1.88030 1.19441 0.91456 0.85342 0.95584 1.21462 1.01287 0.91412 1.08519 1.21371 0.94052 0.97833 0.95090 1.20106 0.94068 0.96145 1.02752 1.20787 1.00809 0.91814 1.03117 1.21404 1.00959 0.89972 0.96512 1.18429 0.90307 0.93439 1.10356 1.22078 0.93352 0.97218 0.90605 1.22905 0.94272 0.97354 1.08684 1.19002 0.83124 0.89987 0.76266 1.90731 1.73010 1.31995 1.53980 1.46165 1.05424 1.11054 1.71908 1.18372 0.89354 0.82493 0.93313 0.98604 1.21898 0.97854 1.02026 0.97426 1.21556 0.98508 0.97378 1.41175 0.90662 1.25863 1.02895 0.94487 0.95526 1.70063 1.36547 1.02262 1.46875 0.85277 0.78328 0.77704 0.78611 1.19464 1.21204 1.18703 0.91003 0.91056 0.87093 0.82621 0.82478 0.90501 0.90036 0.91103 0.83668 0.87307 0.82157 0.75775 0.93884 0.97204 0.91330 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.39 9.68 -90.13 -0.87 -9.26 16 3 C 0.13 3.04 6.70 22.88 0.15 3.19 16 4 C -0.21 -3.46 9.03 22.33 0.20 -3.26 16 5 C -0.07 -0.93 9.68 22.32 0.22 -0.71 16 6 C -0.13 -2.11 5.87 -19.90 -0.12 -2.22 16 7 C -0.11 -1.13 10.00 71.23 0.71 -0.42 16 8 C -0.07 -1.47 9.05 22.57 0.20 -1.27 16 9 C -0.12 -3.30 5.88 -20.07 -0.12 -3.41 16 10 C -0.01 -0.40 9.21 23.81 0.22 -0.19 16 11 C -0.21 -7.06 9.41 23.61 0.22 -6.84 16 12 C 0.53 23.66 7.70 86.32 0.66 24.32 16 13 O -0.61 -33.54 15.89 -4.42 -0.07 -33.61 16 14 N -0.70 -31.40 5.06 -450.52 -2.28 -33.68 16 15 C 0.27 14.75 2.56 44.25 0.11 14.86 16 16 H 0.00 -0.26 7.58 -2.39 -0.02 -0.27 16 17 C -0.13 -7.14 9.26 71.98 0.67 -6.47 16 18 C -0.55 -30.05 8.73 25.60 0.22 -29.83 16 19 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 20 C 0.01 0.67 5.30 84.66 0.45 1.12 16 21 N -0.92 -54.25 11.32 21.45 0.24 -54.01 16 22 Si 0.98 42.79 29.54 68.60 2.03 44.82 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 27 H 0.07 0.74 7.68 -2.39 -0.02 0.72 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.16 1.66 6.30 -2.91 -0.02 1.64 16 30 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.58 8.08 -2.39 -0.02 0.57 16 33 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 34 H 0.15 2.59 6.17 -2.91 -0.02 2.57 16 35 H 0.11 4.17 7.10 -2.91 -0.02 4.15 16 36 H 0.16 3.96 6.07 -2.91 -0.02 3.94 16 37 H 0.41 15.12 8.52 -92.71 -0.79 14.33 16 38 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 41 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -76.00 346.97 4.22 -71.77 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.25 Total: 23.74 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 4.92 Total: -9.77 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.04 Total: -87.69 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -0.94 Total: -42.87 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -76.00 4.22 -71.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491828969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.145 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds