Wall clock time and date at job start Tue Mar 31 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00324 * 2 1 4 4 H 1.48493 * 109.47363 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46695 * 300.00100 * 3 2 1 6 6 H 1.48499 * 109.46865 * 59.99486 * 3 2 1 7 7 C 1.37875 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99933 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47049 * 179.97438 * 9 7 2 11 11 C 1.46492 * 119.99628 * 269.99369 * 10 9 7 12 12 C 1.50699 * 109.47474 * 270.00294 * 11 10 9 13 13 C 1.34509 * 125.78874 * 90.00304 * 12 11 10 14 14 C 1.41389 * 106.83886 * 180.02562 * 13 12 11 15 15 C 1.34510 * 106.84095 * 359.97438 * 14 13 12 16 16 O 1.34304 * 125.78648 * 269.69610 * 12 11 10 17 17 C 1.34776 * 120.00000 * 89.99794 * 10 9 7 18 18 O 1.21618 * 120.00006 * 359.97438 * 17 10 9 19 19 C 1.47097 * 119.99841 * 179.97438 * 17 10 9 20 20 C 1.32994 * 120.00099 * 180.02562 * 19 17 10 21 21 C 1.50697 * 120.00204 * 179.97438 * 20 19 17 22 22 C 1.53786 * 113.61519 * 140.86192 * 21 20 19 23 23 C 1.54049 * 86.98426 * 140.01979 * 22 21 20 24 24 C 1.53781 * 113.61630 * 238.47141 * 21 20 19 25 25 H 0.97002 * 120.00334 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47595 * 59.99314 * 9 7 2 27 27 H 1.09002 * 109.46645 * 299.99717 * 9 7 2 28 28 H 1.09006 * 109.47441 * 30.00609 * 11 10 9 29 29 H 1.09005 * 109.47065 * 149.99890 * 11 10 9 30 30 H 1.07998 * 126.58306 * 0.03503 * 13 12 11 31 31 H 1.08000 * 126.57656 * 179.97438 * 14 13 12 32 32 H 1.08003 * 125.79142 * 180.02562 * 15 14 13 33 33 H 1.08000 * 120.00009 * 359.97438 * 19 17 10 34 34 H 1.08008 * 119.99898 * 0.02562 * 20 19 17 35 35 H 1.09002 * 112.84782 * 9.66782 * 21 20 19 36 36 H 1.08992 * 113.61675 * 254.61723 * 22 21 20 37 37 H 1.09000 * 113.60973 * 25.52011 * 22 21 20 38 38 H 1.09005 * 113.62125 * 220.02158 * 23 22 21 39 39 H 1.08996 * 113.68970 * 89.12734 * 23 22 21 40 40 H 1.08999 * 113.61567 * 334.48200 * 24 21 20 41 41 H 1.08998 * 113.61196 * 105.38554 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6787 -4.1695 -1.2682 12 6 1.7620 -5.2836 -1.7032 13 6 0.6694 -5.1470 -2.4758 14 6 0.1140 -6.4378 -2.6317 15 6 0.9007 -7.2861 -1.9456 16 8 1.9006 -6.5823 -1.3899 17 6 2.6409 -4.1249 1.1677 18 8 2.2461 -3.6624 2.2210 19 6 3.5963 -5.2433 1.1677 20 6 4.0281 -5.7491 2.3194 21 6 5.0065 -6.8953 2.3194 22 6 6.0830 -6.7864 3.4123 23 6 5.9177 -8.3049 3.6123 24 6 4.4930 -8.1436 3.0563 25 1 -0.4851 0.8400 0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8904 28 1 2.6865 -3.3878 -2.0279 29 1 3.6883 -4.5595 -1.1379 30 1 0.2895 -4.2277 -2.8964 31 1 -0.7720 -6.6936 -3.1939 32 1 0.7556 -8.3529 -1.8599 33 1 3.9465 -5.6543 0.2324 34 1 3.6769 -5.3389 3.2548 35 1 5.4095 -7.1077 1.3292 36 1 7.0632 -6.4987 3.0325 37 1 5.7719 -6.1961 4.2742 38 1 5.9461 -8.6134 4.6574 39 1 6.5693 -8.9039 2.9763 40 1 3.7481 -7.9237 3.8210 41 1 4.1907 -8.9508 2.3892 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492097375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:30 Heat of formation + Delta-G solvation = 16.003889 kcal Electronic energy + Delta-G solvation = -22662.575147 eV Core-core repulsion = 19317.424645 eV Total energy + Delta-G solvation = -3345.150501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.28394 -39.26536 -38.58383 -35.21036 -32.98740 -32.71835 -32.35334 -30.10769 -27.76846 -25.93356 -25.69230 -25.23851 -23.13490 -21.45465 -20.77333 -20.31607 -19.55695 -18.24292 -17.20976 -16.75669 -16.27707 -15.93214 -15.54640 -15.11457 -14.66329 -14.57447 -14.29465 -13.67466 -13.00655 -12.78371 -12.70573 -12.58454 -12.55716 -12.52370 -12.41842 -12.14758 -11.69122 -11.36130 -11.16797 -10.90416 -10.73288 -10.63693 -10.61077 -10.47020 -10.18302 -9.70246 -9.62879 -9.00456 -8.96078 -8.44234 -8.27770 -7.75863 -6.04337 -4.09265 1.77478 1.94682 2.85664 3.22551 3.30193 3.37965 3.42015 3.96370 4.07298 4.44982 4.52330 4.60673 4.63421 4.86972 4.96069 5.09226 5.21890 5.27570 5.28974 5.31104 5.47286 5.56114 5.64440 5.65548 5.73198 5.78951 5.84458 5.92161 6.00704 6.03832 6.21069 6.32327 6.33141 6.59240 6.73946 6.75366 7.10313 7.35546 7.46101 7.53090 7.92159 8.22362 8.35949 8.90066 9.07960 9.55973 11.03837 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.005151 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.827877 B = 5434.718304 C = 7420.738917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.246 3.754 10 N -0.590 5.590 11 C 0.191 3.809 12 C -0.024 4.024 13 C -0.196 4.196 14 C -0.214 4.214 15 C -0.051 4.051 16 O -0.175 6.175 17 C 0.538 3.462 18 O -0.539 6.539 19 C -0.200 4.200 20 C -0.075 4.075 21 C -0.088 4.088 22 C -0.132 4.132 23 C -0.143 4.143 24 C -0.130 4.130 25 H 0.263 0.737 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.197 0.803 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 -17.424 -1.890 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.078 0.922 9 C 0.127 3.873 10 N -0.320 5.320 11 C 0.066 3.934 12 C -0.076 4.076 13 C -0.216 4.216 14 C -0.233 4.233 15 C -0.119 4.119 16 O -0.070 6.070 17 C 0.328 3.672 18 O -0.418 6.418 19 C -0.221 4.221 20 C -0.095 4.095 21 C -0.106 4.106 22 C -0.170 4.170 23 C -0.181 4.181 24 C -0.167 4.167 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.214 0.786 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.025 -17.122 -1.160 18.944 hybrid contribution -0.011 0.932 -0.379 1.006 sum 8.013 -16.189 -1.539 18.129 Atomic orbital electron populations 1.69947 1.06002 1.26907 1.50405 1.24930 0.94863 0.99206 0.95039 0.86443 0.80034 0.83377 0.77583 1.19749 1.20962 1.20898 1.21475 0.93450 0.90531 1.51098 0.92248 1.19329 0.87431 0.81900 0.98638 1.48200 1.45953 1.34488 1.03360 1.19910 0.94145 0.90568 0.88745 1.23311 1.00782 0.82816 1.00688 1.21700 0.97140 0.98877 1.03851 1.21817 1.02806 0.93273 1.05399 1.23918 0.89952 0.97804 1.00236 1.84011 1.44325 1.18645 1.60061 1.18484 0.81749 0.82950 0.84056 1.90748 1.58517 1.61773 1.30773 1.22911 1.01051 0.99063 0.99084 1.23534 0.93626 0.93654 0.98646 1.21742 0.95659 0.93987 0.99259 1.22969 0.98677 0.96480 0.98826 1.22892 0.97220 0.96713 1.01232 1.22884 0.96943 0.96998 0.99892 0.92766 0.94836 0.93780 0.86689 0.89631 0.83268 0.83821 0.78633 0.86106 0.85789 0.88674 0.91292 0.89693 0.91456 0.90255 0.89769 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.25 6.48 5.16 -5.19 -0.03 6.46 16 10 N -0.59 -12.85 2.44 -177.83 -0.43 -13.28 16 11 C 0.19 3.23 5.65 -5.20 -0.03 3.20 16 12 C -0.02 -0.40 6.90 -35.63 -0.25 -0.65 16 13 C -0.20 -3.13 10.81 -39.70 -0.43 -3.56 16 14 C -0.21 -2.92 10.91 -39.70 -0.43 -3.36 16 15 C -0.05 -0.65 12.09 29.41 0.36 -0.30 16 16 O -0.17 -2.66 10.65 5.69 0.06 -2.60 16 17 C 0.54 11.87 7.62 -12.67 -0.10 11.77 16 18 O -0.54 -14.17 15.80 5.26 0.08 -14.09 16 19 C -0.20 -3.35 8.84 -37.81 -0.33 -3.68 16 20 C -0.07 -1.10 8.79 -36.13 -0.32 -1.42 16 21 C -0.09 -0.97 4.01 -90.96 -0.36 -1.34 16 22 C -0.13 -1.28 7.65 -25.77 -0.20 -1.47 16 23 C -0.14 -1.19 8.09 -25.78 -0.21 -1.40 16 24 C -0.13 -1.26 7.63 -25.92 -0.20 -1.45 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 27 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 28 H 0.12 1.87 8.07 -51.93 -0.42 1.45 16 29 H 0.09 1.21 6.10 -51.93 -0.32 0.90 16 30 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 31 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.20 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.12 1.74 6.15 -52.49 -0.32 1.41 16 34 H 0.12 2.01 7.49 -52.48 -0.39 1.62 16 35 H 0.10 0.97 8.03 -51.93 -0.42 0.56 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -33.64 352.42 -8.23 -41.87 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.02 Total: 2.55 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.95 Total: -10.74 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.30 Total: -39.10 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.14 Total: -16.69 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.64 -8.23 -41.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492097375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.871 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds