Wall clock time and date at job start Tue Mar 31 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00324 * 2 1 4 4 H 1.48493 * 109.47363 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46695 * 300.00100 * 3 2 1 6 6 H 1.48499 * 109.46865 * 59.99486 * 3 2 1 7 7 C 1.37875 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99933 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47049 * 179.97438 * 9 7 2 11 11 C 1.46492 * 119.99628 * 269.99369 * 10 9 7 12 12 C 1.50699 * 109.47474 * 270.00294 * 11 10 9 13 13 C 1.34509 * 125.78874 * 90.00304 * 12 11 10 14 14 C 1.41389 * 106.83886 * 180.02562 * 13 12 11 15 15 C 1.34510 * 106.84095 * 359.97438 * 14 13 12 16 16 O 1.34304 * 125.78648 * 269.69610 * 12 11 10 17 17 C 1.34776 * 120.00000 * 89.99794 * 10 9 7 18 18 O 1.21618 * 120.00006 * 359.97438 * 17 10 9 19 19 C 1.47097 * 119.99841 * 179.97438 * 17 10 9 20 20 C 1.32994 * 120.00099 * 180.02562 * 19 17 10 21 21 C 1.50697 * 120.00204 * 179.97438 * 20 19 17 22 22 C 1.53786 * 113.61519 * 140.86192 * 21 20 19 23 23 C 1.54049 * 86.98426 * 140.01979 * 22 21 20 24 24 C 1.53781 * 113.61630 * 238.47141 * 21 20 19 25 25 H 0.97002 * 120.00334 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47595 * 59.99314 * 9 7 2 27 27 H 1.09002 * 109.46645 * 299.99717 * 9 7 2 28 28 H 1.09006 * 109.47441 * 30.00609 * 11 10 9 29 29 H 1.09005 * 109.47065 * 149.99890 * 11 10 9 30 30 H 1.07998 * 126.58306 * 0.03503 * 13 12 11 31 31 H 1.08000 * 126.57656 * 179.97438 * 14 13 12 32 32 H 1.08003 * 125.79142 * 180.02562 * 15 14 13 33 33 H 1.08000 * 120.00009 * 359.97438 * 19 17 10 34 34 H 1.08008 * 119.99898 * 0.02562 * 20 19 17 35 35 H 1.09002 * 112.84782 * 9.66782 * 21 20 19 36 36 H 1.08992 * 113.61675 * 254.61723 * 22 21 20 37 37 H 1.09000 * 113.60973 * 25.52011 * 22 21 20 38 38 H 1.09005 * 113.62125 * 220.02158 * 23 22 21 39 39 H 1.08996 * 113.68970 * 89.12734 * 23 22 21 40 40 H 1.08999 * 113.61567 * 334.48200 * 24 21 20 41 41 H 1.08998 * 113.61196 * 105.38554 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6787 -4.1695 -1.2682 12 6 1.7620 -5.2836 -1.7032 13 6 0.6694 -5.1470 -2.4758 14 6 0.1140 -6.4378 -2.6317 15 6 0.9007 -7.2861 -1.9456 16 8 1.9006 -6.5823 -1.3899 17 6 2.6409 -4.1249 1.1677 18 8 2.2461 -3.6624 2.2210 19 6 3.5963 -5.2433 1.1677 20 6 4.0281 -5.7491 2.3194 21 6 5.0065 -6.8953 2.3194 22 6 6.0830 -6.7864 3.4123 23 6 5.9177 -8.3049 3.6123 24 6 4.4930 -8.1436 3.0563 25 1 -0.4851 0.8400 0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8904 28 1 2.6865 -3.3878 -2.0279 29 1 3.6883 -4.5595 -1.1379 30 1 0.2895 -4.2277 -2.8964 31 1 -0.7720 -6.6936 -3.1939 32 1 0.7556 -8.3529 -1.8599 33 1 3.9465 -5.6543 0.2324 34 1 3.6769 -5.3389 3.2548 35 1 5.4095 -7.1077 1.3292 36 1 7.0632 -6.4987 3.0325 37 1 5.7719 -6.1961 4.2742 38 1 5.9461 -8.6134 4.6574 39 1 6.5693 -8.9039 2.9763 40 1 3.7481 -7.9237 3.8210 41 1 4.1907 -8.9508 2.3892 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492097375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:29 Heat of formation + Delta-G solvation = -3.330191 kcal Electronic energy + Delta-G solvation = -22663.413535 eV Core-core repulsion = 19317.424645 eV Total energy + Delta-G solvation = -3345.988890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.43102 -40.77172 -39.62344 -36.96079 -34.94141 -33.93736 -33.76506 -31.54257 -29.60934 -27.15236 -26.70184 -26.43914 -24.89352 -22.62488 -22.15252 -21.51651 -20.44011 -19.68653 -18.81663 -18.33843 -17.90373 -17.38396 -16.71502 -16.46821 -16.13245 -15.96094 -15.65121 -15.12453 -14.58692 -14.34328 -14.02914 -13.83742 -13.73062 -13.56537 -13.44342 -13.30355 -13.30190 -12.99808 -12.80095 -12.63372 -12.40122 -12.24613 -11.74144 -11.62784 -11.41476 -11.29086 -10.81975 -10.67150 -10.66081 -10.25448 -9.66567 -9.37835 -8.23625 -6.38592 0.42031 0.76995 1.36749 1.39253 1.51445 1.70021 2.07860 2.29147 2.47005 2.50424 3.06500 3.59341 3.74809 3.79136 3.86432 3.94515 4.06969 4.11263 4.16449 4.17516 4.35844 4.45999 4.60067 4.84536 4.88050 4.89690 4.90216 4.95002 5.05005 5.12305 5.13491 5.17096 5.18665 5.21866 5.43276 5.47942 5.54406 5.62916 5.67282 5.79490 6.03201 6.23843 6.63233 6.71503 7.24655 7.39818 8.84359 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.005151 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.827877 B = 5434.718304 C = 7420.738917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.265 3.735 10 N -0.594 5.594 11 C 0.190 3.810 12 C -0.045 4.045 13 C -0.212 4.212 14 C -0.230 4.230 15 C -0.034 4.034 16 O -0.180 6.180 17 C 0.527 3.473 18 O -0.600 6.600 19 C -0.216 4.216 20 C -0.047 4.047 21 C -0.091 4.091 22 C -0.135 4.135 23 C -0.130 4.130 24 C -0.131 4.131 25 H 0.267 0.733 26 H 0.025 0.975 27 H -0.007 1.007 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.167 0.833 32 H 0.244 0.756 33 H 0.151 0.849 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.292 -19.580 -2.712 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.209 1.209 7 C -0.581 4.581 8 H 0.075 0.925 9 C 0.144 3.856 10 N -0.323 5.323 11 C 0.067 3.933 12 C -0.096 4.096 13 C -0.232 4.232 14 C -0.249 4.249 15 C -0.101 4.101 16 O -0.076 6.076 17 C 0.320 3.680 18 O -0.483 6.483 19 C -0.237 4.237 20 C -0.067 4.067 21 C -0.109 4.109 22 C -0.172 4.172 23 C -0.168 4.168 24 C -0.168 4.168 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.011 0.989 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.185 0.815 32 H 0.260 0.740 33 H 0.168 0.832 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.163 -19.310 -2.027 21.915 hybrid contribution -0.735 1.495 -0.088 1.668 sum 9.428 -17.815 -2.115 20.267 Atomic orbital electron populations 1.70068 1.07657 1.28140 1.50942 1.25870 0.95776 1.03088 0.94296 0.85334 0.78841 0.78475 0.77952 1.18923 1.19287 1.20878 1.21722 0.93410 0.91626 1.51353 0.92483 1.18747 0.87774 0.83507 0.95618 1.48157 1.45035 1.33554 1.05539 1.20073 0.95804 0.91014 0.86371 1.22991 1.01240 0.83422 1.01928 1.21907 0.97455 0.99888 1.03980 1.22132 1.04067 0.92232 1.06468 1.24846 0.88062 0.99420 0.97795 1.83997 1.45230 1.18034 1.60307 1.19418 0.81868 0.83684 0.83070 1.90701 1.60908 1.64008 1.32728 1.22705 1.01471 0.98427 1.01066 1.23824 0.92451 0.93427 0.97047 1.21933 0.95251 0.92800 1.00962 1.23002 0.98546 0.97772 0.97908 1.22865 0.96157 0.95620 1.02114 1.22904 0.97806 0.96348 0.99744 0.92384 0.95734 0.98879 0.86708 0.86458 0.84287 0.81519 0.74029 0.83155 0.88015 0.86805 0.90189 0.90617 0.90644 0.88494 0.90747 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 8 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.26 14.84 5.16 85.63 0.44 15.28 16 10 N -0.59 -26.98 2.44 -834.78 -2.04 -29.02 16 11 C 0.19 6.46 5.65 85.63 0.48 6.95 16 12 C -0.04 -1.45 6.90 24.83 0.17 -1.27 16 13 C -0.21 -6.83 10.81 22.19 0.24 -6.59 16 14 C -0.23 -5.91 10.91 22.19 0.24 -5.67 16 15 C -0.03 -0.76 12.09 66.97 0.81 0.05 16 16 O -0.18 -5.11 10.65 -2.55 -0.03 -5.14 16 17 C 0.53 24.21 7.62 86.57 0.66 24.87 16 18 O -0.60 -33.62 15.80 -4.09 -0.06 -33.68 16 19 C -0.22 -7.13 8.84 23.43 0.21 -6.93 16 20 C -0.05 -1.37 8.79 24.52 0.22 -1.16 16 21 C -0.09 -1.78 4.01 -11.01 -0.04 -1.82 16 22 C -0.13 -2.27 7.65 31.21 0.24 -2.03 16 23 C -0.13 -1.73 8.09 31.21 0.25 -1.47 16 24 C -0.13 -2.17 7.63 31.12 0.24 -1.94 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 27 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 28 H 0.11 3.83 8.07 -2.38 -0.02 3.81 16 29 H 0.12 3.17 6.10 -2.38 -0.01 3.16 16 30 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 31 H 0.17 3.37 8.06 -2.91 -0.02 3.34 16 32 H 0.24 2.93 8.06 -2.91 -0.02 2.90 16 33 H 0.15 3.99 6.15 -2.91 -0.02 3.97 16 34 H 0.10 3.41 7.49 -2.91 -0.02 3.39 16 35 H 0.11 1.87 8.03 -2.39 -0.02 1.85 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 38 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -77.66 352.42 6.05 -71.61 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 1.01 Total: 17.90 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 4.86 Total: -12.36 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.75 Total: -85.72 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.09 Total: -38.82 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -77.66 6.05 -71.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492097375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.275 kcal (2) G-P(sol) polarization free energy of solvation -77.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds