Wall clock time and date at job start Tue Mar 31 2020 07:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35151 * 125.48651 * 2 1 4 4 C 1.40316 * 107.20623 * 179.74275 * 3 2 1 5 5 C 1.37947 * 106.52798 * 0.41077 * 4 3 2 6 6 C 1.41608 * 126.10140 * 179.84760 * 5 4 3 7 7 C 1.35620 * 120.00074 * 141.07530 * 6 5 4 8 8 C 1.41560 * 119.99773 * 4.95722 * 7 6 5 9 9 O 1.21776 * 120.00110 * 323.40526 * 8 7 6 10 10 N 1.34777 * 119.99921 * 143.40418 * 8 7 6 11 11 C 1.46933 * 120.62785 * 5.24763 * 10 8 7 12 12 C 1.53628 * 108.53964 * 126.37006 * 11 10 8 13 13 C 1.53043 * 109.24237 * 54.85776 * 12 11 10 14 14 C 1.50698 * 109.45090 * 178.49696 * 13 12 11 15 15 H 1.07999 * 120.00244 * 120.05532 * 14 13 12 16 16 C 1.37876 * 119.99936 * 300.05954 * 14 13 12 17 17 N 1.31519 * 119.99925 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00240 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47170 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47016 * 119.99624 * 18 16 14 21 21 H 1.48496 * 109.47488 * 239.99840 * 18 16 14 22 22 C 1.53045 * 109.53540 * 298.51064 * 13 12 11 23 23 C 1.46923 * 120.62957 * 185.52835 * 10 8 7 24 24 O 1.34024 * 125.47875 * 180.02562 * 2 1 3 25 25 H 1.09008 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46936 * 299.96910 * 1 2 3 27 27 H 1.08991 * 109.47382 * 59.97544 * 1 2 3 28 28 H 1.08002 * 126.39334 * 0.02929 * 3 2 1 29 29 H 1.07999 * 126.73543 * 180.28722 * 4 3 2 30 30 H 1.08005 * 120.00270 * 321.07146 * 6 5 4 31 31 H 1.08002 * 120.00329 * 185.23313 * 7 6 5 32 32 H 1.08998 * 109.58316 * 246.19737 * 11 10 8 33 33 H 1.08993 * 109.58875 * 6.63073 * 11 10 8 34 34 H 1.09001 * 109.63456 * 294.86663 * 12 11 10 35 35 H 1.08999 * 109.42997 * 174.71802 * 12 11 10 36 36 H 1.08993 * 109.46381 * 58.52544 * 13 12 11 37 37 H 0.96997 * 120.00322 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.49671 * 301.40928 * 22 13 12 39 39 H 1.09001 * 109.49823 * 181.32215 * 22 13 12 40 40 H 1.08995 * 109.58780 * 353.37278 * 23 10 8 41 41 H 1.09006 * 109.58705 * 113.65763 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.1005 0.0000 4 6 3.6239 0.6604 0.0060 5 6 3.5817 -0.7185 0.0000 6 6 4.6998 -1.5874 -0.0001 7 6 4.6722 -2.7281 0.7329 8 6 3.4892 -3.1034 1.4138 9 8 2.7816 -2.2512 1.9198 10 7 3.1461 -4.4038 1.5021 11 6 4.0451 -5.4510 0.9981 12 6 4.2903 -6.4675 2.1236 13 6 2.9450 -6.9874 2.6356 14 6 3.1810 -8.0125 3.7147 15 1 2.7895 -7.8507 4.7082 16 6 3.8968 -9.1569 3.4337 17 7 4.3740 -9.3537 2.2241 18 14 4.1899 -10.4273 4.7715 19 1 3.5547 -9.9721 6.0342 20 1 3.5974 -11.7253 4.3599 21 1 5.6501 -10.5948 4.9837 22 6 2.1307 -5.8242 3.2066 23 6 1.8635 -4.8007 2.0986 24 8 2.2848 -1.0914 -0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8903 27 1 -0.3633 0.5142 -0.8897 28 1 1.9556 2.1269 0.0004 29 1 4.5087 1.2796 0.0120 30 1 5.5747 -1.3418 -0.5839 31 1 5.5540 -3.3480 0.8007 32 1 3.5835 -5.9496 0.1458 33 1 4.9919 -5.0047 0.6943 34 1 4.8293 -5.9870 2.9401 35 1 4.8792 -7.3000 1.7383 36 1 2.3960 -7.4457 1.8131 37 1 4.8772 -10.1590 2.0263 38 1 2.6900 -5.3498 4.0130 39 1 1.1825 -6.1987 3.5923 40 1 1.3704 -3.9252 2.5210 41 1 1.2267 -5.2451 1.3336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492493767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:36 Heat of formation + Delta-G solvation = -5.308382 kcal Electronic energy + Delta-G solvation = -23084.980471 eV Core-core repulsion = 19738.905800 eV Total energy + Delta-G solvation = -3346.074671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35006 -39.74745 -36.89264 -34.17280 -33.49471 -33.02865 -31.56013 -30.81443 -29.99800 -27.09200 -25.92851 -23.70443 -22.54770 -21.86346 -21.67422 -20.35134 -19.31699 -18.26447 -17.34275 -16.30382 -16.11242 -15.88502 -15.12898 -14.92756 -14.56217 -14.12219 -13.67811 -13.22773 -13.16050 -13.10948 -12.90681 -12.83430 -12.73908 -12.61760 -12.21339 -12.06429 -11.79800 -11.52609 -11.28914 -10.96822 -10.61667 -10.37812 -10.18086 -10.10461 -9.71687 -9.62380 -9.32665 -9.15589 -8.90199 -8.38870 -7.95560 -7.74692 -6.04236 -4.10208 0.81136 2.16197 2.73747 3.14307 3.26409 3.34985 3.39237 3.43472 3.70153 4.40192 4.74309 4.91872 4.94094 5.07935 5.24338 5.27451 5.38789 5.40837 5.63447 5.68052 5.72809 5.81074 5.86592 5.95055 6.07321 6.09933 6.16759 6.18383 6.28647 6.36326 6.47906 6.64122 6.67549 6.92546 7.05277 7.16692 7.28204 7.32106 7.66057 7.91390 7.96770 8.03433 8.39586 8.62358 8.93509 9.54979 11.01255 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036490 B = 0.003497 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.144771 B = 8005.394292 C = 8447.399456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.002 3.998 3 C -0.223 4.223 4 C -0.187 4.187 5 C 0.013 3.987 6 C -0.028 4.028 7 C -0.177 4.177 8 C 0.537 3.463 9 O -0.544 6.544 10 N -0.594 5.594 11 C 0.102 3.898 12 C -0.124 4.124 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.123 4.123 23 C 0.114 3.886 24 O -0.137 6.137 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.104 0.896 36 H 0.027 0.973 37 H 0.260 0.740 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 16.277 -7.629 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.051 4.051 3 C -0.242 4.242 4 C -0.206 4.206 5 C -0.037 4.037 6 C -0.048 4.048 7 C -0.197 4.197 8 C 0.327 3.673 9 O -0.424 6.424 10 N -0.327 5.327 11 C -0.020 4.020 12 C -0.162 4.162 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.161 4.161 23 C -0.009 4.009 24 O -0.031 6.031 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.172 0.828 31 H 0.161 0.839 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.122 0.878 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.702 16.244 -7.448 17.951 hybrid contribution 0.524 -0.753 0.750 1.185 sum -1.178 15.491 -6.698 16.918 Atomic orbital electron populations 1.20293 0.85623 1.04066 1.03094 1.22533 0.94073 0.84405 1.04054 1.21304 0.92801 0.98995 1.11122 1.22004 0.98001 0.92864 1.07766 1.19709 0.82674 0.93377 1.07950 1.20503 0.94955 0.91764 0.97591 1.22474 0.99675 0.98213 0.99361 1.17105 0.86309 0.82762 0.81146 1.90814 1.54044 1.49569 1.48014 1.48208 1.20224 1.05440 1.58792 1.22167 0.92089 0.89166 0.98540 1.22107 1.01828 0.97055 0.95243 1.18639 0.91399 0.91037 0.95959 1.21254 1.33630 1.03231 0.96763 0.92658 1.24963 0.95664 0.97975 0.95412 1.69845 1.36986 1.26974 1.19321 0.86559 0.77864 0.81475 0.82244 1.19836 1.21057 1.21057 1.22002 1.00700 0.96723 0.96649 1.21648 0.84294 0.98710 0.96216 1.84224 1.15852 1.33974 1.69044 0.90599 0.89770 0.90000 0.83813 0.83512 0.82811 0.83882 0.91953 0.91408 0.94217 0.87760 0.95472 0.93047 0.92984 0.92243 0.90428 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.41 36.00 0.37 -0.38 16 2 C 0.00 0.02 7.30 -35.41 -0.26 -0.23 16 3 C -0.22 -2.85 10.76 -39.90 -0.43 -3.28 16 4 C -0.19 -2.45 10.90 -38.91 -0.42 -2.87 16 5 C 0.01 0.20 5.64 -38.40 -0.22 -0.02 16 6 C -0.03 -0.36 9.95 -39.23 -0.39 -0.75 16 7 C -0.18 -2.55 8.76 -39.25 -0.34 -2.89 16 8 C 0.54 9.85 6.63 -14.99 -0.10 9.76 16 9 O -0.54 -11.41 12.91 -18.98 -0.24 -11.65 16 10 N -0.59 -11.08 2.97 -175.93 -0.52 -11.60 16 11 C 0.10 1.85 6.33 -3.48 -0.02 1.82 16 12 C -0.12 -2.73 5.17 -26.38 -0.14 -2.87 16 13 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 14 C -0.51 -13.66 8.56 -34.44 -0.29 -13.95 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -24.37 11.30 55.43 0.63 -23.75 16 18 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.12 -2.57 5.30 -26.61 -0.14 -2.71 16 23 C 0.11 2.16 6.44 -3.71 -0.02 2.14 16 24 O -0.14 -2.30 7.75 -19.44 -0.15 -2.45 16 25 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.14 1.70 6.52 -52.49 -0.34 1.35 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.02 5.62 -51.93 -0.29 0.73 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 2.54 6.03 -51.93 -0.31 2.23 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 6.78 8.31 -40.82 -0.34 6.45 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.48 6.99 -51.93 -0.36 1.12 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -31.55 333.96 -8.89 -40.44 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.93 Total: 1.88 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -2.69 Total: -13.74 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.10 Total: -35.35 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.40 Total: -14.11 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.55 -8.89 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492493767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.134 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds