Wall clock time and date at job start Tue Mar 31 2020 07:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35148 * 125.48813 * 2 1 4 4 C 1.40308 * 107.20883 * 179.72566 * 3 2 1 5 5 C 1.37954 * 106.52944 * 0.41357 * 4 3 2 6 6 C 1.41604 * 126.10801 * 179.85308 * 5 4 3 7 7 C 1.35619 * 120.00226 * 179.44126 * 6 5 4 8 8 C 1.41548 * 120.00389 * 180.27117 * 7 6 5 9 9 O 1.21780 * 119.99744 * 355.02542 * 8 7 6 10 10 N 1.34782 * 120.00222 * 175.01807 * 8 7 6 11 11 C 1.46920 * 120.63024 * 4.99318 * 10 8 7 12 12 C 1.53619 * 108.54323 * 126.36851 * 11 10 8 13 13 C 1.53042 * 109.24443 * 54.85566 * 12 11 10 14 14 C 1.50697 * 109.45131 * 178.49697 * 13 12 11 15 15 H 1.08002 * 119.99932 * 120.06213 * 14 13 12 16 16 C 1.37875 * 120.00223 * 300.06097 * 14 13 12 17 17 N 1.31518 * 119.99817 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99904 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47057 * 60.00491 * 18 16 14 20 20 H 1.48507 * 109.46640 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47253 * 299.99867 * 18 16 14 22 22 C 1.53039 * 109.53674 * 298.51173 * 13 12 11 23 23 C 1.46920 * 120.62851 * 185.27172 * 10 8 7 24 24 O 1.34026 * 125.48034 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46172 * 299.99520 * 1 2 3 27 27 H 1.08999 * 109.47345 * 59.99075 * 1 2 3 28 28 H 1.08004 * 126.39521 * 0.02562 * 3 2 1 29 29 H 1.08005 * 126.74272 * 180.27796 * 4 3 2 30 30 H 1.08001 * 119.99998 * 359.70695 * 6 5 4 31 31 H 1.08001 * 120.00249 * 0.27185 * 7 6 5 32 32 H 1.08999 * 109.58790 * 246.20233 * 11 10 8 33 33 H 1.09002 * 109.58834 * 6.62620 * 11 10 8 34 34 H 1.09004 * 109.63907 * 294.86337 * 12 11 10 35 35 H 1.08998 * 109.43459 * 174.72455 * 12 11 10 36 36 H 1.09000 * 109.45647 * 58.52871 * 13 12 11 37 37 H 0.97000 * 119.99701 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.49939 * 301.41374 * 22 13 12 39 39 H 1.09002 * 109.49622 * 181.31206 * 22 13 12 40 40 H 1.09003 * 109.59240 * 353.37566 * 23 10 8 41 41 H 1.09008 * 109.58552 * 113.65649 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.1004 0.0000 4 6 3.6239 0.6604 0.0064 5 6 3.5818 -0.7185 0.0005 6 6 4.6998 -1.5875 0.0010 7 6 4.5145 -2.9310 0.0062 8 6 5.6321 -3.7997 0.0124 9 8 6.7578 -3.3441 -0.0784 10 7 5.4503 -5.1309 0.1189 11 6 4.0975 -5.7040 0.1196 12 6 4.0246 -6.7856 -0.9689 13 6 5.1401 -7.8080 -0.7396 14 6 5.0501 -8.8913 -1.7833 15 1 5.8797 -9.0668 -2.4523 16 6 3.9090 -9.6584 -1.8842 17 7 2.8987 -9.4444 -1.0699 18 14 3.7973 -11.0008 -3.1784 19 1 4.8786 -11.9940 -2.9560 20 1 2.4776 -11.6747 -3.0799 21 1 3.9465 -10.4005 -4.5284 22 6 6.4999 -7.1134 -0.8417 23 6 6.6010 -6.0359 0.2427 24 8 2.2849 -1.0914 0.0005 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.9558 2.1269 0.0004 29 1 4.5088 1.2795 0.0123 30 1 5.7002 -1.1805 0.0015 31 1 3.5142 -3.3382 0.0056 32 1 3.8888 -6.1471 1.0933 33 1 3.3689 -4.9213 -0.0917 34 1 4.1477 -6.3268 -1.9500 35 1 3.0572 -7.2854 -0.9194 36 1 5.0307 -8.2485 0.2514 37 1 2.0959 -9.9843 -1.1406 38 1 6.5997 -6.6514 -1.8238 39 1 7.2943 -7.8464 -0.7014 40 1 7.5250 -5.4723 0.1128 41 1 6.5938 -6.5037 1.2273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492493768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:38 Heat of formation + Delta-G solvation = -11.383348 kcal Electronic energy + Delta-G solvation = -22349.794542 eV Core-core repulsion = 19003.456441 eV Total energy + Delta-G solvation = -3346.338101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.72961 -39.82125 -36.91217 -34.35316 -33.51864 -33.43646 -31.70342 -30.96157 -30.01416 -27.37590 -25.99029 -23.70282 -22.60008 -22.05416 -21.90990 -20.41720 -19.36602 -18.04510 -17.56253 -16.43966 -16.42788 -16.01285 -15.52214 -14.78302 -14.63250 -14.45986 -13.80477 -13.42991 -13.35115 -13.17279 -13.11923 -12.87748 -12.80805 -12.64521 -12.33018 -12.11395 -11.97766 -11.46555 -11.25640 -10.92672 -10.68972 -10.62222 -10.38240 -10.11760 -9.95086 -9.71276 -9.44390 -9.16448 -8.91765 -8.37978 -8.12478 -7.81189 -6.03152 -4.09297 0.42632 1.95694 2.61234 2.68132 3.29969 3.34489 3.37727 3.55531 3.68628 4.40918 4.46975 4.65670 4.76087 4.98452 5.08276 5.13987 5.23274 5.26634 5.41355 5.47430 5.63012 5.66812 5.80355 5.92725 5.94727 6.02555 6.11681 6.16603 6.23254 6.29312 6.36980 6.47222 6.66972 6.91463 6.95053 7.05316 7.15922 7.28759 7.66172 7.91966 7.93282 8.03806 8.40228 8.55394 8.93845 9.55719 11.02311 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.003453 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.689227 B = 8108.107293 C = 9244.498372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.002 3.998 3 C -0.218 4.218 4 C -0.169 4.169 5 C -0.001 4.001 6 C -0.009 4.009 7 C -0.191 4.191 8 C 0.542 3.458 9 O -0.566 6.566 10 N -0.593 5.593 11 C 0.099 3.901 12 C -0.124 4.124 13 C 0.049 3.951 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.123 4.123 23 C 0.111 3.889 24 O -0.162 6.162 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.135 0.865 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 18.403 4.051 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 C -0.237 4.237 4 C -0.188 4.188 5 C -0.050 4.050 6 C -0.029 4.029 7 C -0.212 4.212 8 C 0.334 3.666 9 O -0.449 6.449 10 N -0.324 5.324 11 C -0.023 4.023 12 C -0.162 4.162 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.161 4.161 23 C -0.011 4.011 24 O -0.058 6.058 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.941 18.201 4.048 19.058 hybrid contribution -0.203 -0.678 -0.740 1.024 sum -4.144 17.523 3.308 18.308 Atomic orbital electron populations 1.20387 0.84922 1.04491 1.03670 1.22721 0.94252 0.84074 1.03932 1.21467 0.92727 0.99452 1.10029 1.22290 0.98390 0.93147 1.04968 1.19875 0.81992 0.93520 1.09638 1.20616 0.95319 0.92191 0.94746 1.22388 1.00243 0.94220 1.04302 1.16951 0.89185 0.82694 0.77765 1.90767 1.25517 1.76378 1.52209 1.48182 1.08805 1.05476 1.69902 1.22244 0.81317 0.97315 1.01376 1.22108 1.05066 0.94467 0.94565 1.18634 0.88534 0.92339 0.97483 1.21174 1.00810 1.15985 1.17079 0.92742 1.24960 0.95808 0.97260 0.95934 1.69827 1.05435 1.40177 1.37685 0.86668 0.77139 0.82099 0.82157 1.20307 1.21306 1.20340 1.22006 1.00993 0.96153 0.96977 1.21709 0.88515 0.91442 0.99466 1.84078 1.16380 1.34740 1.70650 0.90207 0.89460 0.89432 0.83136 0.82725 0.82364 0.84762 0.91795 0.91203 0.94176 0.87727 0.95438 0.92930 0.92915 0.92119 0.90230 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.41 36.01 0.37 -0.13 16 2 C 0.00 0.02 7.30 -35.41 -0.26 -0.24 16 3 C -0.22 -2.09 10.76 -39.90 -0.43 -2.52 16 4 C -0.17 -1.80 10.90 -38.91 -0.42 -2.22 16 5 C 0.00 -0.01 6.84 -38.40 -0.26 -0.28 16 6 C -0.01 -0.12 9.39 -39.24 -0.37 -0.49 16 7 C -0.19 -2.94 8.79 -39.26 -0.35 -3.29 16 8 C 0.54 9.96 7.45 -15.00 -0.11 9.85 16 9 O -0.57 -11.63 15.54 5.12 0.08 -11.56 16 10 N -0.59 -11.11 2.97 -175.93 -0.52 -11.63 16 11 C 0.10 1.83 6.33 -3.49 -0.02 1.81 16 12 C -0.12 -2.77 5.17 -26.39 -0.14 -2.90 16 13 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 14 C -0.51 -13.75 8.56 -34.44 -0.29 -14.04 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -24.50 11.30 55.43 0.63 -23.87 16 18 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.12 -2.57 5.30 -26.61 -0.14 -2.71 16 23 C 0.11 2.08 6.44 -3.71 -0.02 2.06 16 24 O -0.16 -2.11 10.18 4.68 0.05 -2.06 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.15 1.04 8.06 -52.48 -0.42 0.61 16 29 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.16 2.02 7.47 -52.49 -0.39 1.63 16 31 H 0.13 1.96 5.45 -52.49 -0.29 1.67 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.13 5.36 -51.93 -0.28 0.85 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 2.58 6.03 -51.93 -0.31 2.27 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.48 6.99 -51.93 -0.36 1.12 16 41 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -30.53 338.59 -8.24 -38.76 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.82 Total: 1.90 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.73 Total: -12.56 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.10 Total: -35.51 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.13 Total: -13.62 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.53 -8.24 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492493768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.380 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds