Wall clock time and date at job start Tue Mar 31 2020 07:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35148 * 125.48813 * 2 1 4 4 C 1.40308 * 107.20883 * 179.72566 * 3 2 1 5 5 C 1.37954 * 106.52944 * 0.41357 * 4 3 2 6 6 C 1.41604 * 126.10801 * 179.85308 * 5 4 3 7 7 C 1.35619 * 120.00226 * 179.44126 * 6 5 4 8 8 C 1.41548 * 120.00389 * 180.27117 * 7 6 5 9 9 O 1.21780 * 119.99744 * 355.02542 * 8 7 6 10 10 N 1.34782 * 120.00222 * 175.01807 * 8 7 6 11 11 C 1.46920 * 120.63024 * 4.99318 * 10 8 7 12 12 C 1.53619 * 108.54323 * 126.36851 * 11 10 8 13 13 C 1.53042 * 109.24443 * 54.85566 * 12 11 10 14 14 C 1.50697 * 109.45131 * 178.49697 * 13 12 11 15 15 H 1.08002 * 119.99932 * 120.06213 * 14 13 12 16 16 C 1.37875 * 120.00223 * 300.06097 * 14 13 12 17 17 N 1.31518 * 119.99817 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99904 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47057 * 60.00491 * 18 16 14 20 20 H 1.48507 * 109.46640 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47253 * 299.99867 * 18 16 14 22 22 C 1.53039 * 109.53674 * 298.51173 * 13 12 11 23 23 C 1.46920 * 120.62851 * 185.27172 * 10 8 7 24 24 O 1.34026 * 125.48034 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46172 * 299.99520 * 1 2 3 27 27 H 1.08999 * 109.47345 * 59.99075 * 1 2 3 28 28 H 1.08004 * 126.39521 * 0.02562 * 3 2 1 29 29 H 1.08005 * 126.74272 * 180.27796 * 4 3 2 30 30 H 1.08001 * 119.99998 * 359.70695 * 6 5 4 31 31 H 1.08001 * 120.00249 * 0.27185 * 7 6 5 32 32 H 1.08999 * 109.58790 * 246.20233 * 11 10 8 33 33 H 1.09002 * 109.58834 * 6.62620 * 11 10 8 34 34 H 1.09004 * 109.63907 * 294.86337 * 12 11 10 35 35 H 1.08998 * 109.43459 * 174.72455 * 12 11 10 36 36 H 1.09000 * 109.45647 * 58.52871 * 13 12 11 37 37 H 0.97000 * 119.99701 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.49939 * 301.41374 * 22 13 12 39 39 H 1.09002 * 109.49622 * 181.31206 * 22 13 12 40 40 H 1.09003 * 109.59240 * 353.37566 * 23 10 8 41 41 H 1.09008 * 109.58552 * 113.65649 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.1004 0.0000 4 6 3.6239 0.6604 0.0064 5 6 3.5818 -0.7185 0.0005 6 6 4.6998 -1.5875 0.0010 7 6 4.5145 -2.9310 0.0062 8 6 5.6321 -3.7997 0.0124 9 8 6.7578 -3.3441 -0.0784 10 7 5.4503 -5.1309 0.1189 11 6 4.0975 -5.7040 0.1196 12 6 4.0246 -6.7856 -0.9689 13 6 5.1401 -7.8080 -0.7396 14 6 5.0501 -8.8913 -1.7833 15 1 5.8797 -9.0668 -2.4523 16 6 3.9090 -9.6584 -1.8842 17 7 2.8987 -9.4444 -1.0699 18 14 3.7973 -11.0008 -3.1784 19 1 4.8786 -11.9940 -2.9560 20 1 2.4776 -11.6747 -3.0799 21 1 3.9465 -10.4005 -4.5284 22 6 6.4999 -7.1134 -0.8417 23 6 6.6010 -6.0359 0.2427 24 8 2.2849 -1.0914 0.0005 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.9558 2.1269 0.0004 29 1 4.5088 1.2795 0.0123 30 1 5.7002 -1.1805 0.0015 31 1 3.5142 -3.3382 0.0056 32 1 3.8888 -6.1471 1.0933 33 1 3.3689 -4.9213 -0.0917 34 1 4.1477 -6.3268 -1.9500 35 1 3.0572 -7.2854 -0.9194 36 1 5.0307 -8.2485 0.2514 37 1 2.0959 -9.9843 -1.1406 38 1 6.5997 -6.6514 -1.8238 39 1 7.2943 -7.8464 -0.7014 40 1 7.5250 -5.4723 0.1128 41 1 6.5938 -6.5037 1.2273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492493768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:38 Heat of formation + Delta-G solvation = -27.553739 kcal Electronic energy + Delta-G solvation = -22350.495743 eV Core-core repulsion = 19003.456441 eV Total energy + Delta-G solvation = -3347.039302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.57766 -41.27270 -38.53154 -35.41987 -35.34909 -34.25125 -33.20262 -32.15488 -31.56468 -28.62189 -27.51190 -25.11939 -24.19465 -23.33483 -22.86954 -21.57845 -20.77426 -19.46141 -18.91706 -18.25355 -17.29172 -17.21720 -16.89788 -16.48822 -16.16331 -15.52987 -15.16484 -14.88906 -14.64331 -14.44957 -14.04395 -13.99090 -13.88982 -13.79657 -13.61723 -13.42252 -13.16685 -12.90810 -12.79942 -12.68170 -12.48459 -12.15214 -11.97879 -11.66564 -11.50572 -11.09853 -11.01431 -10.76731 -10.70974 -10.39984 -9.59543 -8.83377 -8.08240 -6.21793 -0.61360 1.08381 1.42540 1.42937 1.50566 1.67672 1.89069 2.13571 2.39869 2.44392 3.17928 3.56224 3.82758 3.87436 3.97166 4.11422 4.21228 4.27754 4.37708 4.46050 4.49857 4.56676 4.64492 4.73385 4.74492 4.80111 4.84872 4.88364 4.96222 5.07012 5.13890 5.18252 5.22944 5.28672 5.41378 5.56220 5.57313 5.64281 5.97300 6.10581 6.11027 6.38122 6.48216 6.87180 7.13446 7.45763 8.95079 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.003453 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.689227 B = 8108.107293 C = 9244.498372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.004 3.996 3 C -0.226 4.226 4 C -0.146 4.146 5 C -0.049 4.049 6 C 0.030 3.970 7 C -0.232 4.232 8 C 0.546 3.454 9 O -0.595 6.595 10 N -0.601 5.601 11 C 0.112 3.888 12 C -0.114 4.114 13 C 0.046 3.954 14 C -0.537 4.537 15 H 0.047 0.953 16 C 0.017 3.983 17 N -0.912 5.912 18 Si 0.950 3.050 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.276 1.276 22 C -0.113 4.113 23 C 0.116 3.884 24 O -0.185 6.185 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.182 0.818 29 H 0.179 0.821 30 H 0.165 0.835 31 H 0.138 0.862 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.025 0.975 35 H 0.081 0.919 36 H 0.005 0.995 37 H 0.262 0.738 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 20.663 4.109 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 C -0.245 4.245 4 C -0.165 4.165 5 C -0.097 4.097 6 C 0.010 3.990 7 C -0.252 4.252 8 C 0.340 3.660 9 O -0.480 6.480 10 N -0.331 5.331 11 C -0.010 4.010 12 C -0.153 4.153 13 C 0.027 3.973 14 C -0.575 4.575 15 H 0.066 0.934 16 C -0.182 4.182 17 N -0.551 5.551 18 Si 0.776 3.224 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.152 4.152 23 C -0.006 4.006 24 O -0.082 6.082 25 H 0.095 0.905 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.199 0.801 29 H 0.197 0.803 30 H 0.182 0.818 31 H 0.155 0.845 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.099 0.901 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.957 20.464 4.110 21.453 hybrid contribution 0.004 -1.155 -0.759 1.382 sum -4.953 19.309 3.351 20.214 Atomic orbital electron populations 1.20623 0.82376 1.04973 1.05667 1.23635 0.95853 0.83763 1.01499 1.21900 0.92032 1.00788 1.09753 1.22770 0.99969 0.92442 1.01316 1.19903 0.81939 0.94291 1.13594 1.20742 0.96116 0.91672 0.90464 1.22092 0.99158 0.94489 1.09503 1.17304 0.89587 0.82533 0.76550 1.90736 1.26734 1.76665 1.53868 1.48190 1.08543 1.05859 1.70521 1.22069 0.82070 0.96830 1.00009 1.21875 1.03101 0.95044 0.95283 1.18602 0.90782 0.92435 0.95433 1.21519 1.00876 1.17292 1.17821 0.93450 1.25652 0.95537 0.99227 0.97748 1.69943 1.05667 1.40805 1.38689 0.85737 0.77269 0.79598 0.79773 1.19890 1.20702 1.20117 1.21855 0.99432 0.96677 0.97190 1.21615 0.88955 0.90902 0.99149 1.84073 1.16751 1.36195 1.71207 0.90549 0.87240 0.87411 0.80098 0.80349 0.81809 0.84464 0.91270 0.88770 0.95620 0.90088 0.97654 0.92877 0.94179 0.91539 0.89915 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.41 71.24 0.74 -0.04 16 2 C 0.00 0.07 7.30 24.97 0.18 0.26 16 3 C -0.23 -3.55 10.76 22.06 0.24 -3.31 16 4 C -0.15 -2.68 10.90 22.71 0.25 -2.44 16 5 C -0.05 -1.18 6.84 23.03 0.16 -1.02 16 6 C 0.03 0.79 9.39 22.49 0.21 1.00 16 7 C -0.23 -7.13 8.79 22.48 0.20 -6.94 16 8 C 0.55 20.16 7.45 85.06 0.63 20.79 16 9 O -0.59 -24.56 15.54 -4.60 -0.07 -24.63 16 10 N -0.60 -22.68 2.97 -828.71 -2.46 -25.13 16 11 C 0.11 4.17 6.33 86.51 0.55 4.72 16 12 C -0.11 -5.27 5.17 30.82 0.16 -5.11 16 13 C 0.05 2.27 2.06 -11.51 -0.02 2.25 16 14 C -0.54 -29.52 8.56 25.60 0.22 -29.30 16 15 H 0.05 2.60 7.74 -2.91 -0.02 2.57 16 16 C 0.02 0.95 5.30 84.65 0.45 1.40 16 17 N -0.91 -50.92 11.30 21.45 0.24 -50.68 16 18 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 22 C -0.11 -4.84 5.30 30.67 0.16 -4.68 16 23 C 0.12 4.40 6.44 86.36 0.56 4.95 16 24 O -0.19 -4.58 10.18 -6.18 -0.06 -4.64 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.16 4.03 7.47 -2.91 -0.02 4.01 16 31 H 0.14 4.02 5.45 -2.91 -0.02 4.01 16 32 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.09 3.05 5.36 -2.39 -0.01 3.04 16 34 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.08 4.13 6.03 -2.39 -0.01 4.12 16 36 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 37 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 38 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.08 3.09 6.99 -2.39 -0.02 3.08 16 41 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -66.68 338.59 5.38 -61.30 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.02 Total: 15.92 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 4.68 Total: -17.47 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -2.22 Total: -75.81 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.13 Total: -29.27 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.68 5.38 -61.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492493768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.746 kcal (2) G-P(sol) polarization free energy of solvation -66.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds