Wall clock time and date at job start Tue Mar 31 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35693 * 116.99983 * 2 1 4 4 C 1.38604 * 120.15856 * 0.02562 * 3 2 1 5 5 C 1.38125 * 120.10917 * 180.02562 * 4 3 2 6 6 C 1.38575 * 120.43593 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.84383 * 180.02562 * 6 5 4 8 8 C 1.37759 * 120.31650 * 359.97438 * 6 5 4 9 9 C 1.39922 * 119.88404 * 0.27372 * 8 6 5 10 10 C 1.46940 * 120.21730 * 179.73039 * 9 8 6 11 11 C 1.34998 * 119.99956 * 44.82062 * 10 9 8 12 12 C 1.46244 * 120.00054 * 9.52656 * 11 10 9 13 13 O 1.21724 * 119.99597 * 7.07788 * 12 11 10 14 14 N 1.34773 * 119.99987 * 187.07663 * 12 11 10 15 15 C 1.46504 * 119.99672 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46711 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.46642 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00387 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99373 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00396 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99621 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46889 * 60.00193 * 21 19 17 23 23 H 1.48503 * 109.46900 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47232 * 299.99902 * 21 19 17 25 25 H 1.09003 * 109.46967 * 60.00045 * 1 2 3 26 26 H 1.09006 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47567 * 299.99949 * 1 2 3 28 28 H 1.07999 * 119.94859 * 359.97391 * 4 3 2 29 29 H 1.07999 * 119.78694 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47236 * 269.98391 * 7 6 5 31 31 H 1.08996 * 109.46985 * 29.98041 * 7 6 5 32 32 H 1.08993 * 109.47163 * 149.97780 * 7 6 5 33 33 H 1.07998 * 120.05451 * 179.97438 * 8 6 5 34 34 H 1.07998 * 119.99898 * 224.82655 * 10 9 8 35 35 H 1.07999 * 120.00307 * 189.51651 * 11 10 9 36 36 H 0.96998 * 120.00383 * 0.02562 * 14 12 11 37 37 H 1.08996 * 109.47502 * 300.00373 * 15 14 12 38 38 H 1.08995 * 109.47036 * 60.00619 * 15 14 12 39 39 H 1.09003 * 109.47124 * 300.00055 * 16 15 14 40 40 H 1.08995 * 109.46955 * 60.00459 * 16 15 14 41 41 H 0.97000 * 119.99827 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2934 2.3735 0.0005 5 6 1.9215 3.6037 0.0000 6 6 3.3048 3.6856 -0.0005 7 6 3.9762 5.0347 -0.0005 8 6 4.0692 2.5395 0.0000 9 6 3.4468 1.2864 -0.0047 10 6 4.2551 0.0592 -0.0102 11 6 5.3194 -0.0517 0.8129 12 6 5.5478 0.9516 1.8521 13 8 4.7133 1.8130 2.0603 14 7 6.6822 0.9225 2.5792 15 6 6.9112 1.9279 3.6198 16 6 8.2630 1.6707 4.2887 17 6 8.4983 2.7046 5.3597 18 1 7.7580 3.4689 5.5444 19 6 9.6593 2.6753 6.1029 20 7 10.5611 1.7449 5.8776 21 14 9.9513 3.9573 7.4299 22 1 8.8722 3.8719 8.4465 23 1 11.2633 3.7076 8.0792 24 1 9.9502 5.3109 6.8193 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2147 2.3190 0.0005 29 1 1.3307 4.5078 0.0000 30 1 4.1379 5.3601 -1.0282 31 1 3.3414 5.7564 0.5134 32 1 4.9348 4.9635 0.5132 33 1 5.1470 2.6083 -0.0009 34 1 3.9977 -0.7539 -0.6727 35 1 6.0021 -0.8814 0.7040 36 1 7.3473 0.2363 2.4130 37 1 6.9111 2.9214 3.1715 38 1 6.1188 1.8658 4.3656 39 1 8.2634 0.6771 4.7370 40 1 9.0552 1.7331 3.5427 41 1 11.3776 1.7242 6.4007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492499768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:52 Heat of formation + Delta-G solvation = -36.824016 kcal Electronic energy + Delta-G solvation = -22262.162827 eV Core-core repulsion = 18914.721536 eV Total energy + Delta-G solvation = -3347.441291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33359 -39.11846 -37.52287 -35.00183 -33.78523 -32.81125 -31.64661 -30.28815 -29.15349 -27.88117 -25.92006 -25.18898 -23.58794 -21.72210 -21.07688 -20.67568 -19.03179 -18.12212 -16.90102 -16.34958 -16.09140 -15.81268 -15.23955 -14.86410 -14.58158 -14.30208 -14.26972 -13.96812 -13.81373 -13.45619 -13.10430 -12.88933 -12.50638 -12.27102 -12.20323 -12.10103 -11.88217 -11.37825 -11.19544 -11.02333 -10.95229 -10.76032 -10.64267 -10.29406 -9.92776 -9.64486 -9.42663 -9.19658 -8.50844 -8.33333 -8.05743 -7.76928 -6.08033 -4.10848 0.88599 1.60419 1.99277 3.20921 3.31833 3.35579 3.38690 3.71686 3.87368 3.91349 4.43462 4.71085 4.81642 4.93325 4.98045 5.01639 5.20599 5.24958 5.28837 5.31238 5.42248 5.49375 5.61976 5.73316 5.75457 6.01635 6.13100 6.16204 6.20593 6.38402 6.40165 6.45911 6.59972 6.77346 6.79827 6.88679 7.00179 7.40676 7.54359 7.64173 7.90452 8.11670 8.30497 8.77061 8.95220 9.53805 11.03554 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.003236 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.757437 B = 8651.779109 C = 9277.961212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.136 3.864 4 C -0.220 4.220 5 C -0.071 4.071 6 C -0.135 4.135 7 C -0.106 4.106 8 C 0.009 3.991 9 C -0.096 4.096 10 C -0.017 4.017 11 C -0.212 4.212 12 C 0.528 3.472 13 O -0.538 6.538 14 N -0.717 5.717 15 C 0.123 3.877 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.397 0.603 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.044 -2.397 -15.882 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.091 3.909 4 C -0.239 4.239 5 C -0.089 4.089 6 C -0.135 4.135 7 C -0.163 4.163 8 C -0.009 4.009 9 C -0.097 4.097 10 C -0.037 4.037 11 C -0.233 4.233 12 C 0.316 3.684 13 O -0.419 6.419 14 N -0.366 5.366 15 C 0.001 3.999 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.230 0.770 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.348 -2.023 -15.625 23.435 hybrid contribution 0.350 0.300 0.890 1.002 sum -16.998 -1.723 -14.735 22.562 Atomic orbital electron populations 1.23014 0.78740 1.03624 1.01233 1.85983 1.21041 1.27217 1.88695 1.19006 0.91210 0.83987 0.96691 1.20952 0.99405 0.92297 1.11261 1.20793 0.93933 0.96661 0.97487 1.19616 0.93430 0.95499 1.04943 1.20669 1.00796 0.93308 1.01489 1.20796 0.99095 0.89936 0.91116 1.18122 0.89386 0.93838 1.08310 1.22086 0.91533 0.94726 0.95378 1.23083 1.00443 1.01581 0.98196 1.18440 0.82179 0.85142 0.82660 1.90852 1.44047 1.37864 1.69105 1.46334 1.19921 1.33020 1.37288 1.21681 1.00264 0.89878 0.88121 1.19317 0.89768 0.97864 0.95521 1.21022 1.03891 1.13202 1.17938 0.92344 1.24997 0.95944 0.95911 0.97418 1.69946 1.09023 1.33517 1.40858 0.86579 0.77370 0.81826 0.81802 1.20117 1.21239 1.20104 0.92856 0.88469 0.92744 0.85908 0.86332 0.91944 0.91970 0.91457 0.86119 0.85046 0.85160 0.76966 0.92653 0.92678 0.96004 0.95977 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.95 9.95 -18.78 -0.19 -4.13 16 3 C 0.14 1.90 6.70 -38.64 -0.26 1.65 16 4 C -0.22 -2.76 9.03 -39.49 -0.36 -3.12 16 5 C -0.07 -0.90 9.68 -39.50 -0.38 -1.28 16 6 C -0.13 -1.89 5.87 -104.67 -0.61 -2.50 16 7 C -0.11 -1.26 10.00 36.00 0.36 -0.90 16 8 C 0.01 0.14 6.20 -39.13 -0.24 -0.11 16 9 C -0.10 -1.43 4.55 -104.93 -0.48 -1.90 16 10 C -0.02 -0.23 9.36 -37.21 -0.35 -0.58 16 11 C -0.21 -2.87 9.93 -37.52 -0.37 -3.24 16 12 C 0.53 9.19 6.81 -13.05 -0.09 9.10 16 13 O -0.54 -10.92 12.07 5.17 0.06 -10.85 16 14 N -0.72 -12.78 5.55 -61.76 -0.34 -13.13 16 15 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 21 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 28 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.12 1.88 7.05 -52.49 -0.37 1.51 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.40 6.16 8.45 -40.82 -0.34 5.81 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -32.88 347.31 -7.91 -40.79 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.03 Total: 3.38 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.37 Total: -12.20 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.39 Total: -38.71 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.12 Total: -14.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.88 -7.91 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492499768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.965 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds