Wall clock time and date at job start Tue Mar 31 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35693 * 116.99983 * 2 1 4 4 C 1.38604 * 120.15856 * 0.02562 * 3 2 1 5 5 C 1.38125 * 120.10917 * 180.02562 * 4 3 2 6 6 C 1.38575 * 120.43593 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.84383 * 180.02562 * 6 5 4 8 8 C 1.37759 * 120.31650 * 359.97438 * 6 5 4 9 9 C 1.39922 * 119.88404 * 0.27372 * 8 6 5 10 10 C 1.46940 * 120.21730 * 179.73039 * 9 8 6 11 11 C 1.34998 * 119.99956 * 44.82062 * 10 9 8 12 12 C 1.46244 * 120.00054 * 9.52656 * 11 10 9 13 13 O 1.21724 * 119.99597 * 7.07788 * 12 11 10 14 14 N 1.34773 * 119.99987 * 187.07663 * 12 11 10 15 15 C 1.46504 * 119.99672 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46711 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.46642 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00387 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99373 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00396 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99621 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46889 * 60.00193 * 21 19 17 23 23 H 1.48503 * 109.46900 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47232 * 299.99902 * 21 19 17 25 25 H 1.09003 * 109.46967 * 60.00045 * 1 2 3 26 26 H 1.09006 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47567 * 299.99949 * 1 2 3 28 28 H 1.07999 * 119.94859 * 359.97391 * 4 3 2 29 29 H 1.07999 * 119.78694 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47236 * 269.98391 * 7 6 5 31 31 H 1.08996 * 109.46985 * 29.98041 * 7 6 5 32 32 H 1.08993 * 109.47163 * 149.97780 * 7 6 5 33 33 H 1.07998 * 120.05451 * 179.97438 * 8 6 5 34 34 H 1.07998 * 119.99898 * 224.82655 * 10 9 8 35 35 H 1.07999 * 120.00307 * 189.51651 * 11 10 9 36 36 H 0.96998 * 120.00383 * 0.02562 * 14 12 11 37 37 H 1.08996 * 109.47502 * 300.00373 * 15 14 12 38 38 H 1.08995 * 109.47036 * 60.00619 * 15 14 12 39 39 H 1.09003 * 109.47124 * 300.00055 * 16 15 14 40 40 H 1.08995 * 109.46955 * 60.00459 * 16 15 14 41 41 H 0.97000 * 119.99827 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2934 2.3735 0.0005 5 6 1.9215 3.6037 0.0000 6 6 3.3048 3.6856 -0.0005 7 6 3.9762 5.0347 -0.0005 8 6 4.0692 2.5395 0.0000 9 6 3.4468 1.2864 -0.0047 10 6 4.2551 0.0592 -0.0102 11 6 5.3194 -0.0517 0.8129 12 6 5.5478 0.9516 1.8521 13 8 4.7133 1.8130 2.0603 14 7 6.6822 0.9225 2.5792 15 6 6.9112 1.9279 3.6198 16 6 8.2630 1.6707 4.2887 17 6 8.4983 2.7046 5.3597 18 1 7.7580 3.4689 5.5444 19 6 9.6593 2.6753 6.1029 20 7 10.5611 1.7449 5.8776 21 14 9.9513 3.9573 7.4299 22 1 8.8722 3.8719 8.4465 23 1 11.2633 3.7076 8.0792 24 1 9.9502 5.3109 6.8193 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2147 2.3190 0.0005 29 1 1.3307 4.5078 0.0000 30 1 4.1379 5.3601 -1.0282 31 1 3.3414 5.7564 0.5134 32 1 4.9348 4.9635 0.5132 33 1 5.1470 2.6083 -0.0009 34 1 3.9977 -0.7539 -0.6727 35 1 6.0021 -0.8814 0.7040 36 1 7.3473 0.2363 2.4130 37 1 6.9111 2.9214 3.1715 38 1 6.1188 1.8658 4.3656 39 1 8.2634 0.6771 4.7370 40 1 9.0552 1.7331 3.5427 41 1 11.3776 1.7242 6.4007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492499768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:51 Heat of formation + Delta-G solvation = -57.238767 kcal Electronic energy + Delta-G solvation = -22263.048077 eV Core-core repulsion = 18914.721536 eV Total energy + Delta-G solvation = -3348.326541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38067 -40.39076 -38.50063 -36.64852 -35.00200 -34.73703 -32.62206 -31.85700 -30.53141 -28.66377 -27.10997 -26.71674 -24.92229 -23.16310 -22.42507 -21.99003 -20.29932 -19.10495 -18.56229 -17.85369 -17.19293 -16.71376 -16.59389 -16.46251 -16.34888 -15.56390 -15.29491 -15.16159 -14.81853 -14.49898 -14.45801 -14.35231 -14.13830 -13.59922 -13.23009 -13.11202 -12.94464 -12.92515 -12.72943 -12.54267 -12.37072 -12.22640 -11.88471 -11.67358 -11.61984 -11.46681 -10.94572 -10.64099 -10.60428 -9.91925 -9.19392 -8.78281 -8.24671 -6.35506 -0.18096 0.57749 0.93338 1.40729 1.43283 1.51314 2.33496 2.38103 2.42151 2.53658 2.88275 3.09729 3.75655 3.90446 3.99681 4.05778 4.24559 4.39376 4.41556 4.46193 4.49500 4.50468 4.54421 4.63692 4.74959 4.76007 4.83670 4.85388 5.07845 5.10467 5.19575 5.23857 5.32150 5.44561 5.51928 5.57505 5.57969 5.77071 5.79470 5.90622 6.15903 6.49634 6.73606 6.77964 7.33769 7.39010 8.87024 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.003236 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.757437 B = 8651.779109 C = 9277.961212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.127 3.873 4 C -0.222 4.222 5 C -0.075 4.075 6 C -0.153 4.153 7 C -0.103 4.103 8 C -0.011 4.011 9 C -0.123 4.123 10 C -0.005 4.005 11 C -0.221 4.221 12 C 0.525 3.475 13 O -0.570 6.570 14 N -0.715 5.715 15 C 0.145 3.855 16 C 0.024 3.976 17 C -0.549 4.549 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.965 3.035 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.268 1.268 25 H 0.069 0.931 26 H 0.120 0.880 27 H 0.056 0.944 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.104 0.896 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.409 0.591 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.006 0.994 40 H 0.008 0.992 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.635 -2.424 -16.422 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.082 3.918 4 C -0.241 4.241 5 C -0.092 4.092 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.030 4.030 9 C -0.124 4.124 10 C -0.025 4.025 11 C -0.241 4.241 12 C 0.315 3.685 13 O -0.452 6.452 14 N -0.365 5.365 15 C 0.021 3.979 16 C -0.014 4.014 17 C -0.587 4.587 18 H 0.076 0.924 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.192 1.192 25 H 0.088 0.912 26 H 0.138 0.862 27 H 0.075 0.925 28 H 0.169 0.831 29 H 0.163 0.837 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.180 0.820 35 H 0.183 0.817 36 H 0.244 0.756 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.025 0.975 40 H 0.027 0.973 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.949 -2.073 -16.186 25.007 hybrid contribution 0.722 0.290 0.992 1.261 sum -18.226 -1.783 -15.194 23.796 Atomic orbital electron populations 1.23335 0.76522 1.05536 1.02111 1.85956 1.23340 1.26576 1.88472 1.19170 0.91179 0.85050 0.96435 1.21326 1.00880 0.91788 1.10090 1.21140 0.93566 0.97968 0.96571 1.19938 0.94411 0.95867 1.05141 1.20669 0.99847 0.92880 1.02557 1.20795 0.98526 0.91032 0.92620 1.18424 0.90509 0.94310 1.09166 1.22447 0.90404 0.94714 0.94892 1.23093 1.01821 1.01610 0.97571 1.19087 0.81161 0.85357 0.82890 1.90841 1.44964 1.39308 1.70048 1.46152 1.20898 1.32709 1.36751 1.21132 0.97757 0.90473 0.88515 1.19119 0.91086 0.96409 0.94745 1.21443 1.04296 1.13946 1.19010 0.92418 1.25883 0.95578 0.98005 0.99693 1.70054 1.09496 1.35100 1.41962 0.85503 0.77534 0.79209 0.78841 1.19383 1.20472 1.19245 0.91238 0.86198 0.92503 0.83126 0.83691 0.90122 0.90744 0.93428 0.87774 0.81993 0.81737 0.75558 0.93690 0.94101 0.97532 0.97342 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.60 9.95 -90.12 -0.90 -8.50 16 3 C 0.13 3.40 6.70 22.88 0.15 3.55 16 4 C -0.22 -5.17 9.03 22.33 0.20 -4.97 16 5 C -0.07 -1.79 9.68 22.32 0.22 -1.57 16 6 C -0.15 -4.29 5.87 -19.90 -0.12 -4.41 16 7 C -0.10 -2.45 10.00 71.24 0.71 -1.74 16 8 C -0.01 -0.35 6.20 22.56 0.14 -0.21 16 9 C -0.12 -3.63 4.55 -20.07 -0.09 -3.72 16 10 C -0.01 -0.13 9.36 23.81 0.22 0.10 16 11 C -0.22 -5.72 9.93 23.61 0.23 -5.49 16 12 C 0.52 18.45 6.81 86.32 0.59 19.04 16 13 O -0.57 -23.68 12.07 -4.42 -0.05 -23.73 16 14 N -0.71 -25.93 5.55 -467.51 -2.60 -28.53 16 15 C 0.15 6.47 5.61 86.38 0.48 6.95 16 16 C 0.02 1.23 5.09 29.85 0.15 1.38 16 17 C -0.55 -31.25 9.11 25.60 0.23 -31.01 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 19 C 0.01 0.41 5.46 84.66 0.46 0.87 16 20 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 21 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 26 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 28 H 0.15 2.51 6.30 -2.91 -0.02 2.50 16 29 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 32 H 0.05 1.29 8.08 -2.39 -0.02 1.27 16 33 H 0.10 3.45 7.05 -2.91 -0.02 3.43 16 34 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 35 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 36 H 0.41 12.74 8.45 -92.71 -0.78 11.96 16 37 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 41 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -71.71 347.31 3.71 -68.00 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.24 Total: 21.23 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 4.71 Total: -19.86 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.31 Total: -83.26 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.95 Total: -32.23 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -71.71 3.71 -68.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492499768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.761 kcal (2) G-P(sol) polarization free energy of solvation -71.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds