Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00095 * 2 1 4 4 C 1.53000 * 109.47062 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47269 * 63.56832 * 4 3 2 6 6 C 1.36714 * 119.99848 * 266.28190 * 5 4 3 7 7 H 1.07999 * 119.99715 * 142.07343 * 6 5 4 8 8 C 1.39128 * 119.99952 * 322.08108 * 6 5 4 9 9 N 1.31317 * 119.99843 * 161.21952 * 8 6 5 10 10 Si 1.86792 * 119.99870 * 341.21555 * 8 6 5 11 11 H 1.48508 * 109.47058 * 95.23023 * 10 8 6 12 12 H 1.48501 * 109.47274 * 215.22708 * 10 8 6 13 13 H 1.48501 * 109.47563 * 335.23226 * 10 8 6 14 14 C 1.34778 * 119.99857 * 86.27804 * 5 4 3 15 15 O 1.21759 * 120.00146 * 0.02562 * 14 5 4 16 16 C 1.46230 * 119.99776 * 180.02562 * 14 5 4 17 17 C 1.34971 * 120.00090 * 179.97438 * 16 14 5 18 18 C 1.47144 * 120.00122 * 179.97438 * 17 16 14 19 19 C 1.39898 * 120.17421 * 0.03113 * 18 17 16 20 20 C 1.37848 * 119.82367 * 179.97438 * 19 18 17 21 21 C 1.38434 * 120.17757 * 359.97438 * 20 19 18 22 22 C 1.38396 * 120.34877 * 359.72063 * 21 20 19 23 23 C 1.37900 * 120.17214 * 0.56228 * 22 21 20 24 24 C 1.50707 * 120.08582 * 179.72070 * 23 22 21 25 25 H 1.08998 * 109.46625 * 60.00431 * 1 2 3 26 26 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47337 * 300.00221 * 1 2 3 28 28 H 1.09000 * 109.47234 * 59.99809 * 3 2 1 29 29 H 1.09002 * 109.46724 * 299.99435 * 3 2 1 30 30 H 1.08994 * 109.47784 * 303.56694 * 4 3 2 31 31 H 1.09007 * 109.47192 * 183.56120 * 4 3 2 32 32 H 0.96993 * 120.00044 * 179.97438 * 9 8 6 33 33 H 1.08003 * 119.99920 * 0.02562 * 16 14 5 34 34 H 1.08003 * 119.99989 * 0.02562 * 17 16 14 35 35 H 1.08004 * 120.08421 * 359.94712 * 19 18 17 36 36 H 1.08003 * 119.91508 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.82408 * 180.02562 * 21 20 19 38 38 H 1.08005 * 119.91210 * 180.27786 * 22 21 20 39 39 H 1.08999 * 109.46545 * 269.72153 * 24 23 22 40 40 H 1.08994 * 109.47120 * 149.72687 * 24 23 22 41 41 H 1.08997 * 109.46877 * 29.72041 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9743 0.5329 -1.2359 6 6 4.1683 -0.8202 -1.2638 7 1 3.8911 -1.3874 -2.1401 8 6 4.7225 -1.4663 -0.1634 9 7 4.5779 -2.7638 -0.0223 10 14 5.6725 -0.4880 1.1132 11 1 4.7676 -0.1266 2.2339 12 1 6.7968 -1.3090 1.6300 13 1 6.2082 0.7493 0.4909 14 6 4.1866 1.2672 -2.3460 15 8 4.0142 2.4722 -2.3210 16 6 4.6240 0.6166 -3.5804 17 6 4.8362 1.3518 -4.6922 18 6 5.2769 0.6973 -5.9341 19 6 5.4765 -0.6870 -5.9668 20 6 5.8890 -1.2928 -7.1343 21 6 6.1051 -0.5353 -8.2727 22 6 5.9038 0.8338 -8.2502 23 6 5.4969 1.4555 -7.0885 24 6 5.2844 2.9473 -7.0646 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8901 30 1 3.8525 0.5896 0.8571 31 1 3.9787 2.1784 0.0645 32 1 4.9647 -3.2143 0.7446 33 1 4.7766 -0.4524 -3.6026 34 1 4.6833 2.4208 -4.6700 35 1 5.3083 -1.2794 -5.0795 36 1 6.0439 -2.3613 -7.1611 37 1 6.4278 -1.0159 -9.1845 38 1 6.0702 1.4174 -9.1437 39 1 6.2137 3.4421 -6.7826 40 1 4.5081 3.1921 -6.3397 41 1 4.9777 3.2865 -8.0540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493423912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = -26.290798 kcal Electronic energy + Delta-G solvation = -22726.809360 eV Core-core repulsion = 19379.824823 eV Total energy + Delta-G solvation = -3346.984537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.34835 -38.81233 -37.06899 -34.93040 -33.56929 -32.56230 -32.01369 -30.00803 -28.80145 -26.73023 -25.88470 -24.96383 -23.82230 -22.47018 -21.21841 -19.91659 -18.60907 -17.02886 -16.79889 -16.13671 -15.79272 -15.41779 -15.10163 -14.80933 -14.51659 -14.35922 -13.84017 -13.76771 -13.55188 -13.11982 -12.90981 -12.69493 -12.51868 -12.23244 -11.99626 -11.88988 -11.66181 -11.64868 -11.36030 -10.90563 -10.85053 -10.74975 -10.51176 -10.08257 -9.91608 -9.84183 -9.24522 -9.09816 -8.63486 -8.59322 -7.91446 -7.66325 -6.46202 -4.00747 1.00372 1.57195 2.51992 3.06482 3.21784 3.27088 3.96961 4.11405 4.25082 4.39347 4.45028 4.94802 4.99098 5.03668 5.16215 5.24654 5.39045 5.57281 5.61645 5.67210 5.70254 5.77631 5.80876 5.83591 5.85324 5.93545 5.99552 6.03851 6.14545 6.23276 6.27772 6.35224 6.43630 6.53135 6.66700 6.71468 7.08426 7.12261 7.22066 7.32079 7.77988 8.06270 8.23411 8.95175 9.33318 9.65880 10.64109 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.004561 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.469560 B = 6137.063937 C = 6694.477357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.055 3.945 4 C 0.099 3.901 5 N -0.438 5.438 6 C -0.327 4.327 7 H 0.105 0.895 8 C 0.071 3.929 9 N -0.852 5.852 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.493 3.507 15 O -0.609 6.609 16 C -0.135 4.135 17 C -0.095 4.095 18 C -0.046 4.046 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.078 4.078 24 C -0.118 4.118 25 H 0.033 0.967 26 H 0.081 0.919 27 H 0.030 0.970 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.275 0.725 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 4.907 -8.896 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.023 4.023 4 C -0.025 4.025 5 N -0.155 5.155 6 C -0.455 4.455 7 H 0.123 0.877 8 C -0.137 4.137 9 N -0.487 5.487 10 Si 0.703 3.297 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.286 3.714 15 O -0.498 6.498 16 C -0.155 4.155 17 C -0.116 4.116 18 C -0.047 4.047 19 C -0.125 4.125 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.079 4.079 24 C -0.174 4.174 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.525 5.106 -8.704 10.105 hybrid contribution 0.211 0.286 0.860 0.931 sum -0.314 5.392 -7.844 9.524 Atomic orbital electron populations 1.22663 0.82943 1.02125 0.98783 1.88205 1.17763 1.26632 1.95035 1.22849 0.94758 0.85247 0.99451 1.21780 0.92435 0.98700 0.89538 1.43535 1.56040 1.07840 1.08130 1.18982 1.41475 0.79927 1.05097 0.87741 1.25309 0.95761 0.95269 0.97340 1.69685 1.40559 1.08987 1.29483 0.86967 0.80026 0.80940 0.81729 1.20048 1.21419 1.18582 1.18227 0.81794 0.86021 0.85349 1.90648 1.58607 1.14478 1.86044 1.23261 0.98711 1.01055 0.92485 1.22155 0.98682 0.99914 0.90835 1.18990 0.99356 0.93069 0.93237 1.21568 0.98238 0.94101 0.98566 1.21056 1.00349 0.99839 0.93011 1.21146 1.00906 0.94034 0.98201 1.20882 1.01303 0.94737 0.97402 1.20049 0.99024 0.95924 0.92865 1.20840 1.02588 0.91481 1.02530 0.94866 0.90050 0.95146 0.93815 0.93114 0.90650 0.89717 0.91477 0.84811 0.85298 0.84969 0.86104 0.86499 0.86393 0.91127 0.90799 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.71 10.29 -35.23 -0.36 -8.07 16 3 C 0.05 1.10 6.27 37.16 0.23 1.33 16 4 C 0.10 2.21 4.41 -4.04 -0.02 2.19 16 5 N -0.44 -10.70 2.14 -116.46 -0.25 -10.95 16 6 C -0.33 -8.53 8.56 -15.04 -0.13 -8.66 16 7 H 0.11 2.84 6.93 -52.49 -0.36 2.48 16 8 C 0.07 1.88 5.34 -17.44 -0.09 1.79 16 9 N -0.85 -23.43 13.95 55.51 0.77 -22.65 16 10 Si 0.88 20.50 24.81 -169.99 -4.22 16.28 16 11 H -0.27 -6.18 6.71 56.52 0.38 -5.80 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.26 -6.18 7.10 56.52 0.40 -5.78 16 14 C 0.49 11.77 7.54 -13.05 -0.10 11.67 16 15 O -0.61 -15.27 15.87 5.14 0.08 -15.19 16 16 C -0.13 -2.81 8.67 -37.53 -0.33 -3.13 16 17 C -0.10 -1.75 8.89 -37.13 -0.33 -2.08 16 18 C -0.05 -0.75 5.87 -105.06 -0.62 -1.37 16 19 C -0.11 -1.66 9.41 -39.10 -0.37 -2.03 16 20 C -0.12 -1.66 10.03 -39.65 -0.40 -2.06 16 21 C -0.12 -1.51 10.04 -39.45 -0.40 -1.91 16 22 C -0.13 -1.55 9.69 -39.65 -0.38 -1.93 16 23 C -0.08 -1.10 5.92 -104.14 -0.62 -1.72 16 24 C -0.12 -1.40 9.52 36.01 0.34 -1.06 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.74 3.22 -51.93 -0.17 1.57 16 31 H 0.08 1.81 7.53 -51.93 -0.39 1.42 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 33 H 0.13 2.75 4.53 -52.48 -0.24 2.51 16 34 H 0.13 2.36 5.82 -52.48 -0.31 2.05 16 35 H 0.13 2.10 6.17 -52.48 -0.32 1.77 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.93 6.33 -51.93 -0.33 0.60 16 41 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -30.35 339.13 -6.45 -36.80 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.50 Total: 6.00 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.08 Total: -7.33 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.53 Total: -33.60 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.28 Total: -23.26 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.22 Total: 16.28 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.35 -6.45 -36.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493423912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.507 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds