Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00095 * 2 1 4 4 C 1.53000 * 109.47062 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47269 * 63.56832 * 4 3 2 6 6 C 1.36714 * 119.99848 * 266.28190 * 5 4 3 7 7 H 1.07999 * 119.99715 * 142.07343 * 6 5 4 8 8 C 1.39128 * 119.99952 * 322.08108 * 6 5 4 9 9 N 1.31317 * 119.99843 * 161.21952 * 8 6 5 10 10 Si 1.86792 * 119.99870 * 341.21555 * 8 6 5 11 11 H 1.48508 * 109.47058 * 95.23023 * 10 8 6 12 12 H 1.48501 * 109.47274 * 215.22708 * 10 8 6 13 13 H 1.48501 * 109.47563 * 335.23226 * 10 8 6 14 14 C 1.34778 * 119.99857 * 86.27804 * 5 4 3 15 15 O 1.21759 * 120.00146 * 0.02562 * 14 5 4 16 16 C 1.46230 * 119.99776 * 180.02562 * 14 5 4 17 17 C 1.34971 * 120.00090 * 179.97438 * 16 14 5 18 18 C 1.47144 * 120.00122 * 179.97438 * 17 16 14 19 19 C 1.39898 * 120.17421 * 0.03113 * 18 17 16 20 20 C 1.37848 * 119.82367 * 179.97438 * 19 18 17 21 21 C 1.38434 * 120.17757 * 359.97438 * 20 19 18 22 22 C 1.38396 * 120.34877 * 359.72063 * 21 20 19 23 23 C 1.37900 * 120.17214 * 0.56228 * 22 21 20 24 24 C 1.50707 * 120.08582 * 179.72070 * 23 22 21 25 25 H 1.08998 * 109.46625 * 60.00431 * 1 2 3 26 26 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47337 * 300.00221 * 1 2 3 28 28 H 1.09000 * 109.47234 * 59.99809 * 3 2 1 29 29 H 1.09002 * 109.46724 * 299.99435 * 3 2 1 30 30 H 1.08994 * 109.47784 * 303.56694 * 4 3 2 31 31 H 1.09007 * 109.47192 * 183.56120 * 4 3 2 32 32 H 0.96993 * 120.00044 * 179.97438 * 9 8 6 33 33 H 1.08003 * 119.99920 * 0.02562 * 16 14 5 34 34 H 1.08003 * 119.99989 * 0.02562 * 17 16 14 35 35 H 1.08004 * 120.08421 * 359.94712 * 19 18 17 36 36 H 1.08003 * 119.91508 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.82408 * 180.02562 * 21 20 19 38 38 H 1.08005 * 119.91210 * 180.27786 * 22 21 20 39 39 H 1.08999 * 109.46545 * 269.72153 * 24 23 22 40 40 H 1.08994 * 109.47120 * 149.72687 * 24 23 22 41 41 H 1.08997 * 109.46877 * 29.72041 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9743 0.5329 -1.2359 6 6 4.1683 -0.8202 -1.2638 7 1 3.8911 -1.3874 -2.1401 8 6 4.7225 -1.4663 -0.1634 9 7 4.5779 -2.7638 -0.0223 10 14 5.6725 -0.4880 1.1132 11 1 4.7676 -0.1266 2.2339 12 1 6.7968 -1.3090 1.6300 13 1 6.2082 0.7493 0.4909 14 6 4.1866 1.2672 -2.3460 15 8 4.0142 2.4722 -2.3210 16 6 4.6240 0.6166 -3.5804 17 6 4.8362 1.3518 -4.6922 18 6 5.2769 0.6973 -5.9341 19 6 5.4765 -0.6870 -5.9668 20 6 5.8890 -1.2928 -7.1343 21 6 6.1051 -0.5353 -8.2727 22 6 5.9038 0.8338 -8.2502 23 6 5.4969 1.4555 -7.0885 24 6 5.2844 2.9473 -7.0646 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8901 30 1 3.8525 0.5896 0.8571 31 1 3.9787 2.1784 0.0645 32 1 4.9647 -3.2143 0.7446 33 1 4.7766 -0.4524 -3.6026 34 1 4.6833 2.4208 -4.6700 35 1 5.3083 -1.2794 -5.0795 36 1 6.0439 -2.3613 -7.1611 37 1 6.4278 -1.0159 -9.1845 38 1 6.0702 1.4174 -9.1437 39 1 6.2137 3.4421 -6.7826 40 1 4.5081 3.1921 -6.3397 41 1 4.9777 3.2865 -8.0540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493423912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = -44.028080 kcal Electronic energy + Delta-G solvation = -22727.578506 eV Core-core repulsion = 19379.824823 eV Total energy + Delta-G solvation = -3347.753683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91157 -40.19171 -38.64715 -36.77588 -34.96107 -33.98703 -33.64418 -31.55611 -30.18211 -27.79230 -27.29088 -26.83990 -25.29687 -23.93088 -22.45416 -21.33541 -20.38395 -18.66791 -18.48423 -17.66929 -17.33447 -16.85713 -16.54154 -16.27286 -16.14646 -15.66171 -15.46986 -15.31432 -14.72281 -14.57292 -14.41524 -14.21699 -13.92378 -13.64070 -13.39365 -13.22946 -13.14415 -12.99420 -12.83524 -12.57545 -12.40728 -11.98932 -11.88703 -11.72024 -11.68629 -11.20054 -11.13932 -10.67389 -10.45892 -9.79169 -9.65851 -9.04120 -8.47228 -6.05177 -0.32265 0.50004 1.09350 1.21755 1.33024 1.40110 2.18355 2.40650 2.58056 2.88510 2.98347 3.15303 3.81860 3.89321 4.00354 4.03886 4.12072 4.13944 4.32789 4.34919 4.41049 4.48972 4.51947 4.52538 4.56254 4.69507 4.73828 4.81301 4.81897 4.83031 4.95644 5.13703 5.19701 5.32621 5.38651 5.48912 5.61000 5.68107 5.82269 6.05690 6.12065 6.22807 6.36026 6.96775 7.39571 7.74510 8.66925 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.004561 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.469560 B = 6137.063937 C = 6694.477357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.060 3.940 4 C 0.089 3.911 5 N -0.451 5.451 6 C -0.323 4.323 7 H 0.078 0.922 8 C 0.033 3.967 9 N -0.893 5.893 10 Si 0.926 3.074 11 H -0.258 1.258 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.494 3.506 15 O -0.626 6.626 16 C -0.184 4.184 17 C -0.049 4.049 18 C -0.087 4.087 19 C -0.120 4.120 20 C -0.134 4.134 21 C -0.108 4.108 22 C -0.126 4.126 23 C -0.076 4.076 24 C -0.120 4.120 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.278 0.722 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 6.209 -10.898 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.017 4.017 4 C -0.033 4.033 5 N -0.169 5.169 6 C -0.451 4.451 7 H 0.095 0.905 8 C -0.171 4.171 9 N -0.529 5.529 10 Si 0.752 3.248 11 H -0.184 1.184 12 H -0.210 1.210 13 H -0.192 1.192 14 C 0.288 3.712 15 O -0.516 6.516 16 C -0.204 4.204 17 C -0.070 4.070 18 C -0.087 4.087 19 C -0.138 4.138 20 C -0.152 4.152 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.076 4.076 24 C -0.176 4.176 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.133 0.867 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.098 6.412 -10.705 12.479 hybrid contribution 0.076 -0.061 1.146 1.150 sum -0.022 6.352 -9.559 11.477 Atomic orbital electron populations 1.22874 0.80395 1.03207 1.00470 1.88138 1.20717 1.27567 1.95366 1.22794 0.93079 0.85122 1.00744 1.21937 0.94471 0.98544 0.88387 1.43564 1.57088 1.07236 1.09031 1.18734 1.41406 0.80628 1.04333 0.90479 1.25821 0.96334 0.95936 0.99047 1.69755 1.42260 1.10244 1.30682 0.86159 0.79105 0.79391 0.80138 1.18375 1.20954 1.19199 1.18656 0.80675 0.85912 0.85939 1.90606 1.59396 1.15058 1.86494 1.23015 1.03717 1.00998 0.92673 1.22363 0.94057 0.99671 0.90889 1.19010 1.02677 0.93677 0.93328 1.21613 0.98917 0.94073 0.99178 1.21339 1.00117 1.01131 0.92644 1.21635 0.98133 0.94071 0.98740 1.21320 1.00023 0.95224 0.97814 1.20380 0.97732 0.96974 0.92515 1.20912 1.02676 0.90116 1.03885 0.94094 0.89397 0.92398 0.90158 0.93922 0.91335 0.89019 0.91173 0.85540 0.85211 0.86744 0.84228 0.82849 0.82856 0.90241 0.92116 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.23 10.29 -148.98 -1.53 -18.76 16 3 C 0.06 2.38 6.27 71.98 0.45 2.84 16 4 C 0.09 4.03 4.41 86.38 0.38 4.41 16 5 N -0.45 -22.80 2.14 -640.55 -1.37 -24.17 16 6 C -0.32 -17.66 8.56 84.15 0.72 -16.94 16 7 H 0.08 4.53 6.93 -2.91 -0.02 4.51 16 8 C 0.03 1.80 5.34 84.98 0.45 2.25 16 9 N -0.89 -50.81 13.95 21.69 0.30 -50.51 16 10 Si 0.93 42.96 24.81 68.60 1.70 44.66 16 11 H -0.26 -11.21 6.71 99.48 0.67 -10.54 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.27 -12.53 7.10 99.48 0.71 -11.82 16 14 C 0.49 24.48 7.54 86.32 0.65 25.13 16 15 O -0.63 -31.98 15.87 -4.54 -0.07 -32.05 16 16 C -0.18 -8.09 8.67 23.60 0.20 -7.88 16 17 C -0.05 -1.86 8.89 23.86 0.21 -1.65 16 18 C -0.09 -2.80 5.87 -20.15 -0.12 -2.92 16 19 C -0.12 -3.78 9.41 22.58 0.21 -3.56 16 20 C -0.13 -3.34 10.03 22.22 0.22 -3.12 16 21 C -0.11 -2.18 10.04 22.35 0.22 -1.96 16 22 C -0.13 -2.60 9.69 22.23 0.22 -2.38 16 23 C -0.08 -1.95 5.92 -19.55 -0.12 -2.07 16 24 C -0.12 -2.52 9.52 71.24 0.68 -1.84 16 25 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 3.16 3.22 -2.39 -0.01 3.15 16 31 H 0.09 3.92 7.53 -2.38 -0.02 3.90 16 32 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.13 5.69 4.53 -2.91 -0.01 5.67 16 34 H 0.13 4.80 5.82 -2.91 -0.02 4.78 16 35 H 0.11 3.93 6.17 -2.91 -0.02 3.91 16 36 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 37 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.44 6.33 -2.39 -0.02 1.43 16 41 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 Total: -1.00 -67.86 339.13 5.67 -62.19 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 1.00 Total: 26.25 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.64 Total: -7.61 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -1.07 Total: -74.68 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -1.61 Total: -50.81 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.70 Total: 44.66 kcal Total: -67.86 5.67 -62.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493423912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.161 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds