Wall clock time and date at job start Tue Mar 31 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00071 * 2 1 4 4 C 1.53003 * 109.47296 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46846 * 65.00004 * 4 3 2 6 6 C 1.36714 * 119.99525 * 90.00288 * 5 4 3 7 7 H 1.08005 * 119.99333 * 220.93330 * 6 5 4 8 8 C 1.39119 * 120.00518 * 40.93384 * 6 5 4 9 9 N 1.31323 * 119.99718 * 15.74186 * 8 6 5 10 10 Si 1.86794 * 120.00176 * 195.73339 * 8 6 5 11 11 H 1.48504 * 109.47005 * 90.00566 * 10 8 6 12 12 H 1.48497 * 109.47101 * 209.99967 * 10 8 6 13 13 H 1.48501 * 109.47497 * 330.00589 * 10 8 6 14 14 C 1.34777 * 119.99979 * 270.00067 * 5 4 3 15 15 O 1.21754 * 119.99933 * 4.74638 * 14 5 4 16 16 C 1.46226 * 119.99795 * 184.74942 * 14 5 4 17 17 C 1.34981 * 119.99762 * 173.99488 * 16 14 5 18 18 C 1.47140 * 120.00012 * 350.02720 * 17 16 14 19 19 C 1.39900 * 120.16909 * 132.40556 * 18 17 16 20 20 C 1.37855 * 119.81886 * 179.97438 * 19 18 17 21 21 C 1.38432 * 120.17548 * 359.97438 * 20 19 18 22 22 C 1.38386 * 120.35372 * 359.97438 * 21 20 19 23 23 C 1.50706 * 119.91285 * 180.02562 * 22 21 20 24 24 C 1.37904 * 120.17354 * 359.77818 * 22 21 20 25 25 H 1.09006 * 109.46505 * 299.99790 * 1 2 3 26 26 H 1.08992 * 109.47260 * 59.99896 * 1 2 3 27 27 H 1.08994 * 109.46948 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46962 * 60.00301 * 3 2 1 29 29 H 1.09000 * 109.47074 * 300.00360 * 3 2 1 30 30 H 1.09003 * 109.46687 * 305.00271 * 4 3 2 31 31 H 1.08998 * 109.47028 * 184.99967 * 4 3 2 32 32 H 0.96999 * 119.99896 * 174.98612 * 9 8 6 33 33 H 1.08004 * 120.00110 * 353.99358 * 16 14 5 34 34 H 1.08002 * 119.99526 * 170.02830 * 17 16 14 35 35 H 1.07994 * 120.09057 * 359.94462 * 19 18 17 36 36 H 1.08002 * 119.91516 * 180.02562 * 20 19 18 37 37 H 1.08009 * 119.82375 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.47444 * 90.00013 * 23 22 21 39 39 H 1.09004 * 109.46505 * 209.99710 * 23 22 21 40 40 H 1.09000 * 109.46879 * 329.99318 * 23 22 21 41 41 H 1.07995 * 120.08790 * 180.23747 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2656 1.3449 -2.3372 7 1 3.9558 1.0345 -3.3242 8 6 4.9595 2.5389 -2.1694 9 7 5.6014 2.7733 -1.0479 10 14 4.9785 3.8087 -3.5392 11 1 3.8334 4.7387 -3.3680 12 1 6.2499 4.5743 -3.4870 13 1 4.8672 3.1228 -4.8516 14 6 4.0948 -0.7755 -1.3356 15 8 3.7547 -1.4759 -0.3996 16 6 4.6326 -1.3880 -2.5497 17 6 4.8655 -2.7170 -2.5888 18 6 4.7898 -3.5139 -1.3543 19 6 4.0723 -4.7147 -1.3355 20 6 4.0065 -5.4558 -0.1750 21 6 4.6485 -5.0150 0.9695 22 6 5.3611 -3.8288 0.9588 23 6 6.0567 -3.3585 2.2102 24 6 5.4407 -3.0785 -0.1956 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0889 32 1 6.1446 3.5718 -0.9578 33 1 4.8434 -0.7770 -3.4150 34 1 5.1075 -3.1953 -3.5264 35 1 3.5709 -5.0598 -2.2275 36 1 3.4533 -6.3833 -0.1588 37 1 4.5935 -5.6004 1.8756 38 1 7.0712 -3.7564 2.2335 39 1 6.0934 -2.2691 2.2179 40 1 5.5085 -3.7098 3.0844 41 1 6.0004 -2.1549 -0.2035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493684239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:59 Heat of formation + Delta-G solvation = -25.464804 kcal Electronic energy + Delta-G solvation = -23567.616380 eV Core-core repulsion = 20220.667661 eV Total energy + Delta-G solvation = -3346.948719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.12500 -38.12142 -36.82489 -34.82954 -33.23174 -31.77733 -31.54819 -29.69625 -28.45443 -26.37750 -25.74696 -24.86980 -23.46710 -21.85485 -20.79820 -19.90276 -18.60499 -16.65137 -16.27184 -15.73005 -15.55065 -15.26987 -14.72774 -14.48461 -14.35574 -14.16133 -13.74822 -13.40577 -13.02306 -12.89556 -12.60822 -12.44389 -11.95370 -11.76160 -11.73398 -11.47532 -11.41872 -11.28554 -11.07971 -10.94926 -10.53125 -10.49522 -10.44238 -10.26460 -10.17927 -9.20492 -9.01917 -8.92539 -8.40616 -7.96516 -7.40244 -7.22854 -6.39732 -4.10597 1.59956 2.12288 2.64207 3.09224 3.17435 3.18935 4.04896 4.46862 4.53731 4.60740 4.88987 5.09793 5.38678 5.41087 5.46723 5.67991 5.70134 5.76940 5.87218 5.91772 5.99438 6.03214 6.05488 6.10807 6.17455 6.26829 6.28912 6.36609 6.46630 6.67742 6.74271 6.84969 6.93685 7.05231 7.18205 7.20816 7.26467 7.39242 7.45889 7.70472 7.94142 7.99878 8.39714 9.08323 9.60042 10.07592 10.61730 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.005642 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.447904 B = 4961.839910 C = 5557.051140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.049 3.951 4 C 0.119 3.881 5 N -0.430 5.430 6 C -0.334 4.334 7 H 0.087 0.913 8 C 0.043 3.957 9 N -0.866 5.866 10 Si 0.916 3.084 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.493 3.507 15 O -0.564 6.564 16 C -0.140 4.140 17 C -0.102 4.102 18 C -0.028 4.028 19 C -0.120 4.120 20 C -0.135 4.135 21 C -0.126 4.126 22 C -0.100 4.100 23 C -0.107 4.107 24 C -0.031 4.031 25 H 0.028 0.972 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.271 0.729 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -6.718 0.729 7.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.148 5.148 6 C -0.463 4.463 7 H 0.104 0.896 8 C -0.163 4.163 9 N -0.503 5.503 10 Si 0.743 3.257 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.283 3.717 15 O -0.449 6.449 16 C -0.161 4.161 17 C -0.122 4.122 18 C -0.029 4.029 19 C -0.138 4.138 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.100 4.100 23 C -0.164 4.164 24 C -0.049 4.049 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.203 -6.981 1.330 7.440 hybrid contribution -0.362 1.278 -0.864 1.585 sum -2.565 -5.703 0.466 6.270 Atomic orbital electron populations 1.22607 0.83698 1.01540 0.98638 1.88214 1.17158 1.27655 1.95002 1.23108 0.96695 0.84494 0.98566 1.21473 0.89254 1.01780 0.88040 1.43185 1.56556 1.03914 1.11117 1.19412 1.35957 1.02651 0.88277 0.89584 1.25488 0.94461 0.99090 0.97272 1.69725 1.27105 1.27573 1.25860 0.86104 0.77757 0.80659 0.81202 1.20300 1.20870 1.19337 1.18339 0.82347 0.83202 0.87809 1.90768 1.53092 1.61200 1.39790 1.23385 0.98515 0.94428 0.99766 1.22100 1.00594 0.93583 0.95936 1.18796 0.96881 0.93547 0.93630 1.21029 1.00043 0.94889 0.97861 1.20741 1.01259 0.99857 0.93441 1.20842 0.99308 0.96561 0.97683 1.19619 0.99710 0.95315 0.95373 1.20694 0.99114 1.01724 0.94835 1.20933 0.96541 0.96266 0.91145 0.95302 0.95131 0.90668 0.94603 0.93699 0.91987 0.86543 0.91827 0.85368 0.86160 0.87124 0.87255 0.87413 0.92172 0.91599 0.92307 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.36 -8.01 9.29 -47.99 -0.45 -8.46 16 3 C 0.05 1.04 6.28 37.16 0.23 1.27 16 4 C 0.12 2.82 5.43 -4.04 -0.02 2.80 16 5 N -0.43 -10.71 2.47 -116.46 -0.29 -11.00 16 6 C -0.33 -8.29 8.27 -15.05 -0.12 -8.41 16 7 H 0.09 2.07 7.03 -52.48 -0.37 1.70 16 8 C 0.04 1.04 5.07 -17.44 -0.09 0.95 16 9 N -0.87 -22.09 11.35 55.50 0.63 -21.46 16 10 Si 0.92 18.90 29.59 -169.99 -5.03 13.87 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 13 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 14 C 0.49 12.05 6.47 -13.05 -0.08 11.96 16 15 O -0.56 -14.51 10.86 -7.62 -0.08 -14.59 16 16 C -0.14 -2.97 9.22 -37.53 -0.35 -3.31 16 17 C -0.10 -1.89 9.79 -37.13 -0.36 -2.26 16 18 C -0.03 -0.55 4.39 -105.06 -0.46 -1.02 16 19 C -0.12 -2.10 9.80 -39.10 -0.38 -2.48 16 20 C -0.13 -2.20 10.03 -39.65 -0.40 -2.59 16 21 C -0.13 -2.09 9.69 -39.46 -0.38 -2.48 16 22 C -0.10 -1.82 5.87 -104.69 -0.61 -2.43 16 23 C -0.11 -1.65 10.01 36.01 0.36 -1.29 16 24 C -0.03 -0.62 6.33 -39.10 -0.25 -0.87 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.55 7.49 -51.93 -0.39 1.16 16 31 H 0.12 2.88 5.54 -51.93 -0.29 2.59 16 32 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 33 H 0.13 2.58 6.64 -52.48 -0.35 2.23 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 40 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 41 H 0.11 2.45 7.37 -52.49 -0.39 2.06 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -29.20 342.16 -7.85 -37.05 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.98 Total: 7.92 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.81 Total: -8.49 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.34 Total: -32.46 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.53 Total: -23.05 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.20 -7.85 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493684239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.587 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds