Wall clock time and date at job start Tue Mar 31 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00071 * 2 1 4 4 C 1.53003 * 109.47296 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46846 * 65.00004 * 4 3 2 6 6 C 1.36714 * 119.99525 * 90.00288 * 5 4 3 7 7 H 1.08005 * 119.99333 * 220.93330 * 6 5 4 8 8 C 1.39119 * 120.00518 * 40.93384 * 6 5 4 9 9 N 1.31323 * 119.99718 * 15.74186 * 8 6 5 10 10 Si 1.86794 * 120.00176 * 195.73339 * 8 6 5 11 11 H 1.48504 * 109.47005 * 90.00566 * 10 8 6 12 12 H 1.48497 * 109.47101 * 209.99967 * 10 8 6 13 13 H 1.48501 * 109.47497 * 330.00589 * 10 8 6 14 14 C 1.34777 * 119.99979 * 270.00067 * 5 4 3 15 15 O 1.21754 * 119.99933 * 4.74638 * 14 5 4 16 16 C 1.46226 * 119.99795 * 184.74942 * 14 5 4 17 17 C 1.34981 * 119.99762 * 173.99488 * 16 14 5 18 18 C 1.47140 * 120.00012 * 350.02720 * 17 16 14 19 19 C 1.39900 * 120.16909 * 132.40556 * 18 17 16 20 20 C 1.37855 * 119.81886 * 179.97438 * 19 18 17 21 21 C 1.38432 * 120.17548 * 359.97438 * 20 19 18 22 22 C 1.38386 * 120.35372 * 359.97438 * 21 20 19 23 23 C 1.50706 * 119.91285 * 180.02562 * 22 21 20 24 24 C 1.37904 * 120.17354 * 359.77818 * 22 21 20 25 25 H 1.09006 * 109.46505 * 299.99790 * 1 2 3 26 26 H 1.08992 * 109.47260 * 59.99896 * 1 2 3 27 27 H 1.08994 * 109.46948 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46962 * 60.00301 * 3 2 1 29 29 H 1.09000 * 109.47074 * 300.00360 * 3 2 1 30 30 H 1.09003 * 109.46687 * 305.00271 * 4 3 2 31 31 H 1.08998 * 109.47028 * 184.99967 * 4 3 2 32 32 H 0.96999 * 119.99896 * 174.98612 * 9 8 6 33 33 H 1.08004 * 120.00110 * 353.99358 * 16 14 5 34 34 H 1.08002 * 119.99526 * 170.02830 * 17 16 14 35 35 H 1.07994 * 120.09057 * 359.94462 * 19 18 17 36 36 H 1.08002 * 119.91516 * 180.02562 * 20 19 18 37 37 H 1.08009 * 119.82375 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.47444 * 90.00013 * 23 22 21 39 39 H 1.09004 * 109.46505 * 209.99710 * 23 22 21 40 40 H 1.09000 * 109.46879 * 329.99318 * 23 22 21 41 41 H 1.07995 * 120.08790 * 180.23747 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2656 1.3449 -2.3372 7 1 3.9558 1.0345 -3.3242 8 6 4.9595 2.5389 -2.1694 9 7 5.6014 2.7733 -1.0479 10 14 4.9785 3.8087 -3.5392 11 1 3.8334 4.7387 -3.3680 12 1 6.2499 4.5743 -3.4870 13 1 4.8672 3.1228 -4.8516 14 6 4.0948 -0.7755 -1.3356 15 8 3.7547 -1.4759 -0.3996 16 6 4.6326 -1.3880 -2.5497 17 6 4.8655 -2.7170 -2.5888 18 6 4.7898 -3.5139 -1.3543 19 6 4.0723 -4.7147 -1.3355 20 6 4.0065 -5.4558 -0.1750 21 6 4.6485 -5.0150 0.9695 22 6 5.3611 -3.8288 0.9588 23 6 6.0567 -3.3585 2.2102 24 6 5.4407 -3.0785 -0.1956 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0889 32 1 6.1446 3.5718 -0.9578 33 1 4.8434 -0.7770 -3.4150 34 1 5.1075 -3.1953 -3.5264 35 1 3.5709 -5.0598 -2.2275 36 1 3.4533 -6.3833 -0.1588 37 1 4.5935 -5.6004 1.8756 38 1 7.0712 -3.7564 2.2335 39 1 6.0934 -2.2691 2.2179 40 1 5.5085 -3.7098 3.0844 41 1 6.0004 -2.1549 -0.2035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493684239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:58 Heat of formation + Delta-G solvation = -40.265547 kcal Electronic energy + Delta-G solvation = -23568.258188 eV Core-core repulsion = 20220.667661 eV Total energy + Delta-G solvation = -3347.590527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.75145 -39.68600 -38.45382 -36.62495 -34.76735 -33.47500 -33.09761 -31.33228 -30.00435 -27.69695 -27.22444 -26.72762 -25.04628 -23.43701 -22.23351 -21.55614 -20.34729 -18.27748 -18.05925 -17.24255 -17.13965 -16.91048 -16.27861 -16.13923 -15.90087 -15.73175 -15.27950 -14.91712 -14.57389 -14.35417 -14.14638 -13.84940 -13.54431 -13.29700 -13.20568 -13.10155 -13.03022 -12.76254 -12.66179 -12.61837 -12.22688 -12.03536 -11.89640 -11.84840 -11.75835 -11.01258 -10.58834 -10.49646 -10.15246 -9.45440 -9.14671 -8.81181 -8.24905 -6.03313 0.10608 0.73446 1.16488 1.46413 1.48672 1.58705 2.31901 2.72100 3.02209 3.08562 3.14379 3.29976 3.98891 4.10102 4.18166 4.26378 4.34270 4.37485 4.41700 4.51722 4.55370 4.56490 4.65993 4.68989 4.76676 4.80820 4.82909 4.90109 4.99598 5.04219 5.28241 5.32373 5.35457 5.43453 5.50312 5.60799 5.75980 5.84565 5.98049 6.13179 6.34281 6.39746 6.52913 7.19973 7.74738 8.22664 8.76936 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.005642 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.447904 B = 4961.839910 C = 5557.051140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.060 3.940 4 C 0.121 3.879 5 N -0.445 5.445 6 C -0.348 4.348 7 H 0.090 0.910 8 C 0.003 3.997 9 N -0.899 5.899 10 Si 0.983 3.017 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.259 1.259 14 C 0.483 3.517 15 O -0.585 6.585 16 C -0.180 4.180 17 C -0.067 4.067 18 C -0.059 4.059 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.127 4.127 22 C -0.116 4.116 23 C -0.104 4.104 24 C -0.056 4.056 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.273 0.727 33 H 0.134 0.866 34 H 0.162 0.838 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 -8.363 -0.014 8.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.017 4.017 4 C -0.003 4.003 5 N -0.163 5.163 6 C -0.476 4.476 7 H 0.107 0.893 8 C -0.199 4.199 9 N -0.536 5.536 10 Si 0.807 3.193 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.183 1.183 14 C 0.275 3.725 15 O -0.471 6.471 16 C -0.201 4.201 17 C -0.087 4.087 18 C -0.059 4.059 19 C -0.142 4.142 20 C -0.150 4.150 21 C -0.145 4.145 22 C -0.116 4.116 23 C -0.161 4.161 24 C -0.074 4.074 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.179 0.821 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.299 -8.635 0.581 9.262 hybrid contribution -0.034 1.599 -0.534 1.686 sum -3.333 -7.037 0.048 7.786 Atomic orbital electron populations 1.22823 0.81023 1.02820 1.00222 1.88152 1.20180 1.27987 1.95296 1.22910 0.94690 0.84622 0.99513 1.21340 0.91432 1.00287 0.87235 1.43375 1.57296 1.04353 1.11316 1.19644 1.36351 1.03139 0.88463 0.89263 1.26273 0.93723 1.00480 0.99449 1.69846 1.27902 1.28161 1.27719 0.85074 0.77507 0.77979 0.78704 1.19923 1.20938 1.18317 1.18894 0.81852 0.83083 0.88657 1.90730 1.53986 1.61578 1.40783 1.23273 1.02172 0.95673 0.98957 1.22576 0.96230 0.92583 0.97311 1.19055 0.98221 0.94933 0.93678 1.21374 0.99349 0.93922 0.99530 1.21219 1.00424 1.00764 0.92627 1.21251 0.98080 0.95906 0.99251 1.19979 1.00191 0.96020 0.95431 1.20704 1.00502 1.00238 0.94614 1.20818 0.97954 0.95781 0.92863 0.93046 0.94099 0.89604 0.92096 0.94009 0.94540 0.87834 0.91753 0.84869 0.82072 0.84576 0.83584 0.84295 0.90085 0.94013 0.90328 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.40 -17.67 9.29 -136.78 -1.27 -18.94 16 3 C 0.06 2.58 6.28 71.98 0.45 3.03 16 4 C 0.12 6.07 5.43 86.38 0.47 6.53 16 5 N -0.44 -23.14 2.47 -640.56 -1.58 -24.72 16 6 C -0.35 -17.71 8.27 84.14 0.70 -17.01 16 7 H 0.09 4.37 7.03 -2.91 -0.02 4.35 16 8 C 0.00 0.17 5.07 84.98 0.43 0.60 16 9 N -0.90 -47.40 11.35 21.69 0.25 -47.15 16 10 Si 0.98 38.94 29.59 68.60 2.03 40.97 16 11 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 12 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 13 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 14 C 0.48 24.63 6.47 86.32 0.56 25.19 16 15 O -0.58 -31.33 10.86 7.68 0.08 -31.25 16 16 C -0.18 -7.80 9.22 23.60 0.22 -7.58 16 17 C -0.07 -2.45 9.79 23.86 0.23 -2.22 16 18 C -0.06 -2.26 4.39 -20.15 -0.09 -2.35 16 19 C -0.12 -4.02 9.80 22.58 0.22 -3.80 16 20 C -0.13 -3.88 10.03 22.23 0.22 -3.66 16 21 C -0.13 -3.91 9.69 22.35 0.22 -3.70 16 22 C -0.12 -4.20 5.87 -19.91 -0.12 -4.32 16 23 C -0.10 -3.20 10.01 71.24 0.71 -2.49 16 24 C -0.06 -2.32 6.33 22.58 0.14 -2.18 16 25 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.95 7.49 -2.39 -0.02 1.93 16 31 H 0.10 5.39 5.54 -2.39 -0.01 5.38 16 32 H 0.27 13.55 8.31 -92.71 -0.77 12.77 16 33 H 0.13 5.48 6.64 -2.91 -0.02 5.46 16 34 H 0.16 4.42 8.06 -2.91 -0.02 4.39 16 35 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 36 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.04 1.45 8.08 -2.38 -0.02 1.44 16 40 H 0.08 2.06 8.08 -2.39 -0.02 2.05 16 41 H 0.08 3.67 7.37 -2.91 -0.02 3.64 16 Total: -1.00 -65.72 342.16 6.13 -59.59 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 1.01 Total: 33.31 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 5.62 Total: -11.80 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.34 Total: -71.87 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -1.19 Total: -50.19 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -65.72 6.13 -59.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493684239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.321 kcal (2) G-P(sol) polarization free energy of solvation -65.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds