Wall clock time and date at job start Tue Mar 31 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99640 * 2 1 4 4 C 1.53000 * 109.46622 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46799 * 63.57219 * 4 3 2 6 6 C 1.36713 * 120.00224 * 266.27565 * 5 4 3 7 7 H 1.07999 * 119.99966 * 142.07978 * 6 5 4 8 8 C 1.39124 * 119.99870 * 322.08536 * 6 5 4 9 9 N 1.31324 * 119.99787 * 161.21202 * 8 6 5 10 10 Si 1.86799 * 120.00182 * 341.21561 * 8 6 5 11 11 H 1.48504 * 109.47053 * 95.22475 * 10 8 6 12 12 H 1.48497 * 109.47301 * 215.22465 * 10 8 6 13 13 H 1.48495 * 109.46969 * 335.22782 * 10 8 6 14 14 C 1.34776 * 120.00153 * 86.28409 * 5 4 3 15 15 O 1.21763 * 120.00153 * 359.97438 * 14 5 4 16 16 C 1.46230 * 119.99959 * 179.97438 * 14 5 4 17 17 C 1.34987 * 119.99867 * 179.97438 * 16 14 5 18 18 C 1.47144 * 119.99934 * 179.97438 * 17 16 14 19 19 C 1.39895 * 120.17365 * 0.02562 * 18 17 16 20 20 C 1.37856 * 119.82309 * 179.97438 * 19 18 17 21 21 C 1.38432 * 120.17424 * 359.97438 * 20 19 18 22 22 C 1.38397 * 120.35168 * 359.72479 * 21 20 19 23 23 C 1.50695 * 119.91419 * 180.28259 * 22 21 20 24 24 C 1.37901 * 120.17098 * 0.55474 * 22 21 20 25 25 H 1.09002 * 109.47226 * 299.99763 * 1 2 3 26 26 H 1.08997 * 109.46862 * 60.00133 * 1 2 3 27 27 H 1.08995 * 109.47196 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46953 * 60.00544 * 3 2 1 29 29 H 1.08992 * 109.47010 * 299.99995 * 3 2 1 30 30 H 1.08993 * 109.47787 * 303.57037 * 4 3 2 31 31 H 1.09005 * 109.47145 * 183.56629 * 4 3 2 32 32 H 0.97005 * 119.99865 * 179.97438 * 9 8 6 33 33 H 1.08001 * 120.00029 * 359.97438 * 16 14 5 34 34 H 1.08002 * 119.99584 * 359.97438 * 17 16 14 35 35 H 1.08012 * 120.08782 * 359.97438 * 19 18 17 36 36 H 1.08002 * 119.91101 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.82294 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46618 * 270.27990 * 23 22 21 39 39 H 1.08999 * 109.47223 * 30.27216 * 23 22 21 40 40 H 1.08992 * 109.47514 * 150.27477 * 23 22 21 41 41 H 1.07997 * 120.08734 * 179.71638 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9741 0.5331 -1.2359 6 6 4.1682 -0.8199 -1.2640 7 1 3.8911 -1.3871 -2.1403 8 6 4.7226 -1.4661 -0.1637 9 7 4.5780 -2.7637 -0.0227 10 14 5.6726 -0.4880 1.1131 11 1 4.7677 -0.1266 2.2338 12 1 6.7969 -1.3090 1.6298 13 1 6.2082 0.7493 0.4908 14 6 4.1865 1.2674 -2.3459 15 8 4.0134 2.4724 -2.3211 16 6 4.6249 0.6170 -3.5801 17 6 4.8372 1.3525 -4.6919 18 6 5.2789 0.6981 -5.9336 19 6 5.4795 -0.6860 -5.9661 20 6 5.8928 -1.2917 -7.1335 21 6 6.1089 -0.5340 -8.2717 22 6 5.9067 0.8349 -8.2494 23 6 6.1388 1.6493 -9.4960 24 6 5.4989 1.4564 -7.0879 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8525 0.5897 0.8570 31 1 3.9786 2.1785 0.0646 32 1 4.9648 -3.2143 0.7443 33 1 4.7789 -0.4517 -3.6020 34 1 4.6828 2.4212 -4.6700 35 1 5.3109 -1.2786 -5.0789 36 1 6.0477 -2.3602 -7.1603 37 1 6.4323 -1.0144 -9.1834 38 1 7.1764 1.9818 -9.5247 39 1 5.9287 1.0380 -10.3736 40 1 5.4792 2.5170 -9.4912 41 1 5.3459 2.5254 -7.0708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493684240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:01 Heat of formation + Delta-G solvation = -28.484228 kcal Electronic energy + Delta-G solvation = -22482.317822 eV Core-core repulsion = 19135.238171 eV Total energy + Delta-G solvation = -3347.079651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.29316 -38.82232 -37.07231 -34.95246 -33.94285 -32.07837 -31.95693 -30.16450 -28.93099 -26.72599 -25.89770 -24.98525 -23.71292 -22.19558 -21.84001 -19.75821 -18.47893 -17.04611 -16.72354 -16.20252 -15.81468 -15.50420 -15.00553 -14.80131 -14.54218 -14.41191 -13.81702 -13.78034 -13.61521 -13.07426 -12.96117 -12.75991 -12.52984 -12.23216 -12.13808 -11.89145 -11.67772 -11.63165 -11.33197 -10.97871 -10.89919 -10.77883 -10.59267 -10.09138 -9.91226 -9.78599 -9.24477 -9.09649 -8.63466 -8.59735 -7.92548 -7.68751 -6.46182 -4.00744 1.00616 1.56154 2.50409 3.06554 3.21859 3.27234 3.96424 4.11469 4.24924 4.39348 4.44986 4.88270 4.93355 5.03427 5.13496 5.29393 5.38521 5.53674 5.58358 5.61652 5.65069 5.71862 5.76982 5.79045 5.84689 5.91375 5.94125 6.03561 6.11654 6.17495 6.25553 6.34748 6.43160 6.55678 6.66888 6.69813 7.06789 7.11988 7.21342 7.32072 7.78084 8.06249 8.23432 8.95217 9.33300 9.65919 10.64094 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.004136 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.525286 B = 6768.606168 C = 7297.207873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.055 3.945 4 C 0.099 3.901 5 N -0.438 5.438 6 C -0.328 4.328 7 H 0.105 0.895 8 C 0.072 3.928 9 N -0.852 5.852 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.493 3.507 15 O -0.609 6.609 16 C -0.134 4.134 17 C -0.094 4.094 18 C -0.041 4.041 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.129 4.129 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.112 4.112 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.275 0.725 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.247 4.378 -9.763 10.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.023 4.023 4 C -0.025 4.025 5 N -0.156 5.156 6 C -0.455 4.455 7 H 0.123 0.877 8 C -0.136 4.136 9 N -0.487 5.487 10 Si 0.703 3.297 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.286 3.714 15 O -0.498 6.498 16 C -0.154 4.154 17 C -0.115 4.115 18 C -0.041 4.041 19 C -0.134 4.134 20 C -0.133 4.133 21 C -0.147 4.147 22 C -0.093 4.093 23 C -0.168 4.168 24 C -0.130 4.130 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.197 4.575 -9.576 10.614 hybrid contribution 0.180 0.340 0.929 1.005 sum -0.017 4.915 -8.647 9.946 Atomic orbital electron populations 1.22663 0.82945 1.02124 0.98785 1.88208 1.17760 1.26624 1.95037 1.22848 0.94752 0.85249 0.99456 1.21779 0.92446 0.98705 0.89532 1.43537 1.56036 1.07847 1.08136 1.18983 1.41475 0.79921 1.05107 0.87733 1.25307 0.95747 0.95262 0.97327 1.69692 1.40553 1.08984 1.29483 0.86969 0.80031 0.80947 0.81736 1.20047 1.21412 1.18579 1.18232 0.81814 0.86021 0.85359 1.90652 1.58585 1.14492 1.86034 1.23265 0.98621 1.01075 0.92451 1.22116 0.98738 0.99771 0.90873 1.19124 0.98261 0.93229 0.93459 1.21571 0.98976 0.94216 0.98597 1.21061 0.99515 0.99800 0.92885 1.21042 1.01892 0.93418 0.98371 1.19780 0.99932 0.94174 0.95391 1.20760 1.01954 0.99341 0.94762 1.21182 1.00489 0.99505 0.91864 0.95147 0.94864 0.90052 0.93810 0.93111 0.90639 0.89715 0.91479 0.84755 0.85556 0.85004 0.86027 0.86540 0.91416 0.91799 0.91672 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.72 10.29 -35.23 -0.36 -8.08 16 3 C 0.05 1.10 6.27 37.16 0.23 1.33 16 4 C 0.10 2.22 4.41 -4.04 -0.02 2.20 16 5 N -0.44 -10.73 2.14 -116.47 -0.25 -10.98 16 6 C -0.33 -8.53 8.55 -15.05 -0.13 -8.66 16 7 H 0.11 2.84 6.94 -52.49 -0.36 2.48 16 8 C 0.07 1.89 5.34 -17.44 -0.09 1.80 16 9 N -0.85 -23.42 13.95 55.50 0.77 -22.64 16 10 Si 0.88 20.51 24.81 -169.99 -4.22 16.29 16 11 H -0.27 -6.18 6.71 56.52 0.38 -5.81 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.26 -6.18 7.10 56.52 0.40 -5.78 16 14 C 0.49 11.80 7.54 -13.05 -0.10 11.70 16 15 O -0.61 -15.36 15.87 5.13 0.08 -15.28 16 16 C -0.13 -2.79 8.67 -37.53 -0.33 -3.11 16 17 C -0.09 -1.73 9.46 -37.12 -0.35 -2.08 16 18 C -0.04 -0.66 5.87 -105.06 -0.62 -1.27 16 19 C -0.12 -1.79 9.41 -39.10 -0.37 -2.16 16 20 C -0.11 -1.52 10.03 -39.65 -0.40 -1.92 16 21 C -0.13 -1.57 9.69 -39.45 -0.38 -1.96 16 22 C -0.09 -1.15 5.87 -104.69 -0.61 -1.76 16 23 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 24 C -0.11 -1.57 9.44 -39.10 -0.37 -1.94 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.75 3.22 -51.93 -0.17 1.58 16 31 H 0.08 1.81 7.54 -51.93 -0.39 1.42 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.13 2.75 4.53 -52.49 -0.24 2.52 16 34 H 0.13 2.32 7.52 -52.49 -0.39 1.93 16 35 H 0.13 2.08 6.17 -52.48 -0.32 1.76 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 41 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -30.41 343.00 -6.54 -36.96 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.68 Total: 5.44 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.06 Total: -6.87 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.53 Total: -33.62 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.28 Total: -23.36 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.22 Total: 16.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.41 -6.54 -36.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493684240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.471 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds